Michael Riffle

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 25

Top Venues

Journal of proteome research

bioRxiv : the preprint server for biology

Analytical chemistry

The Journal of cell biology

University of Washington

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Washington

United States

Senior Computing Specialist :: Biochemistry & Genome Sciences

University of Washington

United States

Research Consultant :: Biochemistry

Publications

Juan Camilo Rojas Echeverri, Frank Hause, Claudio Iacobucci, Christian H Ihling, Dirk Tänzler, Nicholas Shulman, Michael Riffle, Brendan X MacLean, Andrea Sinz
A Workflow for Improved Analysis of Cross-Linking Mass Spectrometry Data Integrating Parallel Accumulation-Serial Fragmentation with MeroX and Skyline. Analytical chemistry 96 (19) (2024)
Juan Camilo Rojas Echeverri, Frank Hause, Claudio Iacobucci, Christian H Ihling, Dirk Tänzler, Nicholas Shulman, Michael Riffle, Brendan X MacLean, Andrea Sinz
A Workflow for Improved Analysis of Cross-Linking Mass Spectrometry Data Integrating Parallel Accumulation-Serial Fragmentation with MeroX and Skyline. Analytical chemistry 96 (19) (2024)
Juan Camilo Rojas Echeverri, Frank Hause, Claudio Iacobucci, Christian H Ihling, Dirk Tänzler, Nicholas Shulman, Michael Riffle, Brendan X MacLean, Andrea Sinz
A Workflow for Improved Analysis of Cross-Linking Mass Spectrometry Data Integrating Parallel Accumulation-Serial Fragmentation with MeroX and Skyline. Analytical chemistry 96 (19) (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Christine C Wu, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Jesse D Canterbury, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Christine C Wu, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A Framework for Quality Control in Quantitative Proteomics. Journal of proteome research (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Christine C Wu, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Juan Camilo Rojas Echeverri, Frank Hause, Claudio Iacobucci, Christian H Ihling, Dirk Tänzler, Nicholas Shulman, Michael Riffle, Brendan X MacLean, Andrea Sinz
A Workflow for Improved Analysis of Cross-Linking Mass Spectrometry Data Integrating Parallel Accumulation-Serial Fragmentation with MeroX and Skyline. Analytical chemistry 96 (19) (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Christine C Wu, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Ratna R Thangudu, Michael Holck, Deepak Singhal, Alexander Pilozzi, Nathan J Edwards, Paul A Rudnick, Marcin J Domagalski, Padmini Chilappagari, Lei Ma, Yi Xin, Toan Le, Kristen Nyce, Rekha Chaudhary, Karen A Ketchum, Aaron Maurais, Brian Connolly, Michael Riffle, Matthew C Chambers, Brendan X MacLean, Michael J MacCoss, Peter B McGarvey, Anand Basu, John Otridge, Esmeralda Casas-Silva, Sudha Venkatachari, Henry Rodriguez, Xu Zhang
NCI's Proteomic Data Commons: A Cloud-Based Proteomics Repository Empowering Comprehensive Cancer Analysis Through Cross-Referencing with Genomic and Imaging Data. Cancer research communications (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Juan Camilo Rojas Echeverri, Frank Hause, Claudio Iacobucci, Christian H Ihling, Dirk Tänzler, Nicholas Shulman, Michael Riffle, Brendan X MacLean, Andrea Sinz
A Workflow for Improved Analysis of Cross-Linking Mass Spectrometry Data Integrating Parallel Accumulation-Serial Fragmentation with MeroX and Skyline. Analytical chemistry (2024)
Kristine A Tsantilas, Gennifer E Merrihew, Julia E Robbins, Richard S Johnson, Jea Park, Deanna L Plubell, Eric Huang, Michael Riffle, Vagisha Sharma, Brendan X MacLean, Josh Eckels, Michael S Bereman, Sandra Elizabeth Spencer, Andrew N Hoofnagle, Michael J MacCoss
A framework for quality control in quantitative proteomics. bioRxiv : the preprint server for biology (2024)
Michael R Hoopmann, David D Shteynberg, Alex Zelter, Michael Riffle, Andrew S Lyon, David A Agard, Qing Luan, Brad J Nolen, Michael J MacCoss, Trisha N Davis, Robert L Moritz
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline. Journal of proteome research 22 (2) (2023)
Michael R Hoopmann, David D Shteynberg, Alex Zelter, Michael Riffle, Andrew S Lyon, David A Agard, Qing Luan, Brad J Nolen, Michael J MacCoss, Trisha N Davis, Robert L Moritz
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline. Journal of proteome research 22 (2) (2023)
Michael R Hoopmann, David D Shteynberg, Alex Zelter, Michael Riffle, Andrew S Lyon, David A Agard, Qing Luan, Brad J Nolen, Michael J MacCoss, Trisha N Davis, Robert L Moritz
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline. Journal of proteome research 22 (2) (2023)
Michael R Hoopmann, David D Shteynberg, Alex Zelter, Michael Riffle, Andrew S Lyon, David A Agard, Qing Luan, Brad J Nolen, Michael J MacCoss, Trisha N Davis, Robert L Moritz
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline. Journal of proteome research (2023)
Michael R Hoopmann, David D Shteynberg, Alex Zelter, Michael Riffle, Andrew S Lyon, David A Agard, Qing Luan, Brad J Nolen, Michael J MacCoss, Trisha N Davis, Robert L Moritz
Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline. Journal of proteome research 22 (2) (2023)
Lilian R Heil, Eugen Damoc, Tabiwang N Arrey, Anna Pashkova, Eduard Denisov, Johannes Petzoldt, Amelia C Peterson, Chris Hsu, Brian C Searle, Nicholas Shulman, Michael Riffle, Brian Connolly, Brendan X MacLean, Philip M Remes, Michael W Senko, Hamish I Stewart, Christian Hock, Alexander A Makarov, Daniel Hermanson, Vlad Zabrouskov, Christine C Wu, Michael J MacCoss
Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition. Journal of proteome research (2023)
Michael Riffle, Michael R Hoopmann, Daniel Jaschob, Guo Zhong, Robert L Moritz, Michael J MacCoss, Trisha N Davis, Nina Isoherranen, Alex Zelter
Discovery and Visualization of Uncharacterized Drug-Protein Adducts Using Mass Spectrometry. Analytical chemistry 94 (8) (2022)
Rachel L Flores, Zachary E Peterson, Alex Zelter, Michael Riffle, Charles L Asbury, Trisha N Davis
Three interacting regions of the Ndc80 and Dam1 complexes support microtubule tip-coupling under load. The Journal of cell biology 221 (5) (2022)
Ray Sajulga, Caleb W Easterly, Michael Riffle, Bart Mesuere, Thilo Muth, Subina Mehta, Praveen Kumar, James Johnson, Bjoern Andreas Gruening, Henning Schiebenhoefer, Carolin A Kolmeder, Stephan Fuchs, Brook L Nunn, Joel Rudney, Timothy J Griffin, Pratik D Jagtap
Survey of metaproteomics software tools for functional microbiome analysis. PloS one 15 (11) (2020)
Molly P Mikan, H Rodger Harvey, Emma B Timmins-Schiffman, Michael Riffle, Damon H May, Ian Salter, William Stafford Noble, Brook L Nunn
Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes. The ISME journal 14 (1) (2019)
Michael Riffle, Daniel Jaschob, Alex Zelter, Trisha N Davis
Proxl (Protein Cross-Linking Database): A Public Server, QC Tools, and Other Major Updates. Journal of proteome research 18 (2) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Michael Riffle