Jian-Xin Wang (Jianxin Wang)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 55

Top Topics

Loop Mediated Isothermal Amplification

Top Venues

Bioinformatics (Oxford, England)

Briefings in bioinformatics

Nature communications

Nucleic acids research

This page only lists publications with an associated author ORCID identifier.

Publications

Chao Deng, Hong-Dong Li, Li-Shen Zhang, Yiwei Liu, Yaohang Li, Jian-Xin Wang
Identifying new cancer genes based on the integration of annotated gene sets via hypergraph neural networks. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Meng Wang, Chuqi Lei, Jian-Xin Wang, Yaohang Li, Min Li
TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning. Briefings in bioinformatics 25 (3) (2024)
Guanglei Yu, Qichang Zhao, Xuehua Bi, Jian-Xin Wang
DDAffinity: predicting the changes in binding affinity of multiple point mutations using protein 3D structure. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Fan Nie, Peng Ni, Neng Huang, Jun Zhang, Zhenyu Wang, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
De novo diploid genome assembly using long noisy reads. Nature communications 15 (1) (2024)
Xiaoshu Zhu, Shuang Meng, Gaoshi Li, Jian-Xin Wang, Xiaoqing Peng
AGImpute: imputation of scRNA-seq data based on a hybrid GAN with dropouts identification. Bioinformatics (Oxford, England) 40 (2) (2024)
Peng Ni, Jinrui Xu, Zeyu Zhong, Feng Luo, Jian-Xin Wang
RNA m6A detection using raw current signals and basecalling errors from Nanopore direct RNA sequencing reads. Bioinformatics (Oxford, England) 40 (6) (2024)
Guanglei Yu, Qichang Zhao, Xuehua Bi, Jian-Xin Wang
DDAffinity: predicting the changes in binding affinity of multiple point mutations using protein 3D structure. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Kang Hu, Peng Ni, Minghua Xu, You Zou, Jianye Chang, Xin Gao, Yaohang Li, Jue Ruan, Bin Hu, Jian-Xin Wang
HiTE: a fast and accurate dynamic boundary adjustment approach for full-length transposable element detection and annotation. Nature communications 15 (1) (2024)
Guanglei Yu, Qichang Zhao, Xuehua Bi, Jian-Xin Wang
DDAffinity: predicting the changes in binding affinity of multiple point mutations using protein 3D structure. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Teng Ma, Jian-Xin Wang
GraphPath: a graph attention model for molecular stratification with interpretability based on the pathway-pathway interaction network. Bioinformatics (Oxford, England) 40 (4) (2024)
Meng Wang, Chuqi Lei, Jian-Xin Wang, Yaohang Li, Min Li
TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning. Briefings in bioinformatics 25 (3) (2024)
Kang Hu, Peng Ni, Minghua Xu, You Zou, Jianye Chang, Xin Gao, Yaohang Li, Jue Ruan, Bin Hu, Jian-Xin Wang
HiTE: a fast and accurate dynamic boundary adjustment approach for full-length transposable element detection and annotation. Nature communications 15 (1) (2024)
Teng Ma, Jian-Xin Wang
GraphPath: a graph attention model for molecular stratification with interpretability based on the pathway-pathway interaction network. Bioinformatics (Oxford, England) 40 (4) (2024)
Xiaoshu Zhu, Shuang Meng, Gaoshi Li, Jian-Xin Wang, Xiaoqing Peng
AGImpute: imputation of scRNA-seq data based on a hybrid GAN with dropouts identification. Bioinformatics (Oxford, England) 40 (2) (2024)
Chao Deng, Hong-Dong Li, Li-Shen Zhang, Yiwei Liu, Yaohang Li, Jian-Xin Wang
Identifying new cancer genes based on the integration of annotated gene sets via hypergraph neural networks. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Teng Ma, Jian-Xin Wang
GraphPath: a graph attention model for molecular stratification with interpretability based on the pathway-pathway interaction network. Bioinformatics (Oxford, England) 40 (4) (2024)
Fan Nie, Peng Ni, Neng Huang, Jun Zhang, Zhenyu Wang, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
De novo diploid genome assembly using long noisy reads. Nature communications 15 (1) (2024)
Peng Ni, Jinrui Xu, Zeyu Zhong, Feng Luo, Jian-Xin Wang
RNA m6A detection using raw current signals and basecalling errors from Nanopore direct RNA sequencing reads. Bioinformatics (Oxford, England) 40 (6) (2024)
Meng Wang, Chuqi Lei, Jian-Xin Wang, Yaohang Li, Min Li
TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning. Briefings in bioinformatics 25 (3) (2024)
Peng Ni, Jinrui Xu, Zeyu Zhong, Feng Luo, Jian-Xin Wang
RNA m6A detection using raw current signals and basecalling errors from Nanopore direct RNA sequencing reads. Bioinformatics (Oxford, England) 40 (6) (2024)
Xiaoshu Zhu, Shuang Meng, Gaoshi Li, Jian-Xin Wang, Xiaoqing Peng
AGImpute: imputation of scRNA-seq data based on a hybrid GAN with dropouts identification. Bioinformatics (Oxford, England) 40 (2) (2024)
Yunpei Xu, Shaokai Wang, Qilong Feng, Jiazhi Xia, Yaohang Li, Hong-Dong Li, Jian-Xin Wang
scCAD: Cluster decomposition-based anomaly detection for rare cell identification in single-cell expression data. Nature communications 15 (1) (2024)
Kang Hu, Peng Ni, Minghua Xu, You Zou, Jianye Chang, Xin Gao, Yaohang Li, Jue Ruan, Bin Hu, Jian-Xin Wang
HiTE: a fast and accurate dynamic boundary adjustment approach for full-length transposable element detection and annotation. Nature communications 15 (1) (2024)
Fan Nie, Peng Ni, Neng Huang, Jun Zhang, Zhenyu Wang, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
De novo diploid genome assembly using long noisy reads. Nature communications 15 (1) (2024)
Chao Deng, Hong-Dong Li, Li-Shen Zhang, Yiwei Liu, Yaohang Li, Jian-Xin Wang
Identifying new cancer genes based on the integration of annotated gene sets via hypergraph neural networks. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Bingbin Liu, Yuxuan Qian, Jian-Xin Wang
EDDSN-MRT: multiple rodent tracking based on ear detection and dual siamese network for rodent social behavior analysis. BMC neuroscience 24 (1) (2023)
Wei Lan, Yi Dong, Hongyu Zhang, Chunling Li, Qingfeng Chen, Jin Liu, Jian-Xin Wang, Yi-Ping Phoebe Chen
Benchmarking of computational methods for predicting circRNA-disease associations. Briefings in bioinformatics (2023)
Yunpei Xu, Hong-Dong Li, Cui-Xiang Lin, Ruiqing Zheng, Yaohang Li, Jinhui Xu, Jian-Xin Wang
CellBRF: a feature selection method for single-cell clustering using cell balance and random forest. Bioinformatics (Oxford, England) 39 (39 Suppl 1) (2023)
Bingbin Liu, Yuxuan Qian, Jian-Xin Wang
EDDSN-MRT: multiple rodent tracking based on ear detection and dual siamese network for rodent social behavior analysis. BMC neuroscience 24 (1) (2023)
Bin Wang, Kun Liu, Yaohang Li, Jian-Xin Wang
DFHiC: a dilated full convolution model to enhance the resolution of Hi-C data. Bioinformatics (Oxford, England) 39 (5) (2023)
Neng Huang, Minghua Xu, Fan Nie, Peng Ni, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data. Bioinformatics (Oxford, England) 39 (1) (2023)
Wei Lan, Yi Dong, Hongyu Zhang, Chunling Li, Qingfeng Chen, Jin Liu, Jian-Xin Wang, Yi-Ping Phoebe Chen
Benchmarking of computational methods for predicting circRNA-disease associations. Briefings in bioinformatics 24 (1) (2023)
Wei Lan, Yi Dong, Hongyu Zhang, Chunling Li, Qingfeng Chen, Jin Liu, Jian-Xin Wang, Yi-Ping Phoebe Chen
Benchmarking of computational methods for predicting circRNA-disease associations. Briefings in bioinformatics 24 (1) (2023)
Bin Wang, Kun Liu, Yaohang Li, Jian-Xin Wang
DFHiC: a dilated full convolution model to enhance the resolution of Hi-C data. Bioinformatics (Oxford, England) 39 (5) (2023)
Peng Ni, Fan Nie, Zeyu Zhong, Jinrui Xu, Neng Huang, Jun Zhang, Haochen Zhao, You Zou, Yuanfeng Huang, Jin-Chen Li, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
DNA 5-methylcytosine detection and methylation phasing using PacBio circular consensus sequencing. Nature communications 14 (1) (2023)
Neng Huang, Minghua Xu, Fan Nie, Peng Ni, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data. Bioinformatics (Oxford, England) 39 (1) (2023)
Bingbin Liu, Yuxuan Qian, Jian-Xin Wang
EDDSN-MRT: multiple rodent tracking based on ear detection and dual siamese network for rodent social behavior analysis. BMC neuroscience 24 (1) (2023)
Haochen Zhao, Peng Ni, Qichang Zhao, Xiao Liang, Di Ai, Shannon Erhardt, Jun Wang, Yaohang Li, Jian-Xin Wang
Identifying the serious clinical outcomes of adverse reactions to drugs by a multi-task deep learning framework. Communications biology 6 (1) (2023)
Jun Zhang, Fan Nie, Neng Huang, Peng Ni, Feng Luo, Jian-Xin Wang
Fec: a fast error correction method based on two-rounds overlapping and caching. Bioinformatics (Oxford, England) 38 (19) (2022)
Wei Peng, Hancheng Liu, Wei Dai, Ning Yu, Jian-Xin Wang
Predicting cancer drug response using parallel heterogeneous graph convolutional networks with neighborhood interactions. Bioinformatics (Oxford, England) 38 (19) (2022)
Zhongjian Cheng, Qichang Zhao, Yaohang Li, Jian-Xin Wang
IIFDTI: predicting drug-target interactions through interactive and independent features based on attention mechanism. Bioinformatics (Oxford, England) 38 (17) (2022)
Linyuan Guo, Jiahua He, Peicong Lin, Sheng-You Huang, Jian-Xin Wang
TRScore: a 3D RepVGG-based scoring method for ranking protein docking models. Bioinformatics (Oxford, England) 38 (9) (2022)
Erich D Jarvis, Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M D Wood, Alan Tracey, Françoise Thibaud-Nissen, Mitchell R Vollger, David Porubsky, Haoyu Cheng, Mobin Asri, Glennis A Logsdon, Paolo Carnevali, Mark J P Chaisson, Chen-Shan Chin, Sarah Cody, Joanna Collins, Peter Ebert, Merly Escalona, Olivier Fedrigo, Robert S Fulton, Lucinda L Fulton, Shilpa Garg, Jennifer L Gerton, Jay Ghurye, Anastasiya Granat, Richard E Green, William Harvey, Patrick Hasenfeld, Alex Hastie, Marina Haukness, Erich B Jaeger, Miten Jain, Melanie Kirsche, Mikhail Kolmogorov, Jan O Korbel, Sergey Koren, Jonas Korlach, Joyce Lee, Daofeng Li, Tina Lindsay, Julian Lucas, Feng Luo, Tobias Marschall, Matthew W Mitchell, Jennifer McDaniel, Fan Nie, Hugh E Olsen, Nathan D Olson, Trevor Pesout, Tamara Potapova, Daniela Puiu, Allison Regier, Jue Ruan, Steven L Salzberg, Ashley D Sanders, Michael C Schatz, Anthony Schmitt, Valerie A Schneider, Siddarth Selvaraj, Kishwar Shafin, Alaina Shumate, Nathan O Stitziel, Catherine Stober, James Torrance, Justin Wagner, Jian-Xin Wang, Aaron Wenger, Chuan-Le Xiao, Aleksey V Zimin, Guo-Jie Zhang, Ting Wang, Heng Li, Erik Garrison, David Haussler, Ira Hall, Justin M Zook, Evan E Eichler, Adam M Phillippy, Benedict Paten, Kerstin Howe, Karen H Miga, null null
Semi-automated assembly of high-quality diploid human reference genomes. Nature 611 (7936) (2022)
Chris K Kim, Ji Whae Choi, Zhicheng Jiao, Dongcui Wang, Jing Wu, Thomas Y Yi, Kasey C Halsey, Feyisope Eweje, Thi My Linh Tran, Chang Liu, Robin Wang, John Sollee, Celina Hsieh, Ken Chang, Fang-Xue Yang, Ritambhara Singh, Jie-Lin Ou, Raymond Y Huang, Cai Feng, Michael D Feldman, Tao Liu, Ji Sheng Gong, Shaolei Lu, Carsten Eickhoff, Xue Feng, Ihab Kamel, Ronnie Sebro, Michael K Atalay, Terrance Healey, Yong Fan, Wei-Hua Liao, Jian-Xin Wang, Harrison X Bai
An automated COVID-19 triage pipeline using artificial intelligence based on chest radiographs and clinical data. NPJ digital medicine 5 (1) (2022)
Ying Chen, Fan Nie, Shang-Qian Xie, Ying-Feng Zheng, Qi Dai, Thomas Bray, Yao-Xin Wang, Jian-Feng Xing, Zhi-Jian Huang, De-Peng Wang, Li-Juan He, Feng Luo, Jian-Xin Wang, Yi-Zhi Liu, Chuan-Le Xiao
Efficient assembly of nanopore reads via highly accurate and intact error correction. Nature communications 12 (1) (2021)
Zhongqi Wen, Cheng Yan, Guihua Duan, Suning Li, Fang-Xiang Wu, Jian-Xin Wang
A survey on predicting microbe-disease associations: biological data and computational methods. Briefings in bioinformatics 22 (3) (2021)
Xingyu Liao, Kang Hu, Adil Salhi, You Zou, Jian-Xin Wang, Xin Gao
msRepDB: a comprehensive repetitive sequence database of over 80 000 species. Nucleic acids research (2021)
Lan Huang, Huimin Luo, Suning Li, Fang-Xiang Wu, Jian-Xin Wang
Drug-drug similarity measure and its applications. Briefings in bioinformatics 22 (4) (2021)
Cui-Xiang Lin, Hong-Dong Li, Chao Deng, Yuanfang Guan, Jian-Xin Wang
TissueNexus: a database of human tissue functional gene networks built with a large compendium of curated RNA-seq data. Nucleic acids research (2021)
Xiaoqing Peng, Hong-Dong Li, Fang-Xiang Wu, Jian-Xin Wang
Identifying the tissues-of-origin of circulating cell-free DNAs is a promising way in noninvasive diagnostics. Briefings in bioinformatics 22 (3) (2021)
You Zou, Yuejie Zhu, Yaohang Li, Fang-Xiang Wu, Jian-Xin Wang
Parallel computing for genome sequence processing. Briefings in bioinformatics 22 (5) (2021)
Xingyu Liao, Min Li, Kang Hu, Fang-Xiang Wu, Xin Gao, Jian-Xin Wang
A sensitive repeat identification framework based on short and long reads. Nucleic acids research 49 (17) (2021)
Hong-Dong Li, Changhuo Yang, Zhimin Zhang, Mengyun Yang, Fang-Xiang Wu, Gilbert S Omenn, Jian-Xin Wang
IsoResolve: predicting splice isoform functions by integrating gene and isoform-level features with domain adaptation. Bioinformatics (Oxford, England) 37 (4) (2021)
Peng Ni, Neng Huang, Fan Nie, Jun Zhang, Zhi Zhang, Bo Wu, Lu Bai, Wende Liu, Chuan-Le Xiao, Feng Luo, Jian-Xin Wang
Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning. Nature communications 12 (1) (2021)
Mengyun Yang, Huimin Luo, Yaohang Li, Fang-Xiang Wu, Jian-Xin Wang
Overlap matrix completion for predicting drug-associated indications. PLoS computational biology 15 (12) (2019)