Mohammed AlQuraishi

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 18

Top Venues

Nature methods

Nature biotechnology

Nature structural & molecular biology

Protein engineering, design & selection : PEDS

This page only lists publications with an associated author ORCID identifier.

Publications

Gustaf Ahdritz, Nazim Bouatta, Christina Floristean, Sachin Kadyan, Qinghui Xia, William Gerecke, Timothy J O'Donnell, Daniel Berenberg, Ian Fisk, Niccolò Zanichelli, Bo Zhang, Arkadiusz Nowaczynski, Bei Wang, Marta M Stepniewska-Dziubinska, Shang Zhang, Adegoke A Ojewole, Murat Efe Guney, Stella Biderman, Andrew M Watkins, Stephen Ra, Pablo Ribalta Lorenzo, Lucas Nivon, Brian D Weitzner, Yih-En Andrew Ban, Shiyang Chen, Minjia Zhang, Conglong Li, Shuaiwen Leon Song, Yuxiong He, Peter Karl Sorger, Emad Mostaque, Zhao Zhang, Richard Bonneau, Mohammed AlQuraishi
OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization. Nature methods (2024)
Zachary H Walsh, Parin Shah, Neeharika Kothapalli, Shivem B Shah, Gergő Nikolényi, D Zack Brodtman, Giuseppe Leuzzi, Meri Rogava, Michael Mu, Patricia Ho, Sinan Abuzaid, Neil Vasan, Mohammed AlQuraishi, Joshua D Milner, Alberto Ciccia, Johannes C Melms, Benjamin Izar
Mapping variant effects on anti-tumor hallmarks of primary human T cells with base-editing screens. Nature biotechnology (2024)
Gustaf Ahdritz, Nazim Bouatta, Christina Floristean, Sachin Kadyan, Qinghui Xia, William Gerecke, Timothy J O'Donnell, Daniel Berenberg, Ian Fisk, Niccolò Zanichelli, Bo Zhang, Arkadiusz Nowaczynski, Bei Wang, Marta M Stepniewska-Dziubinska, Shang Zhang, Adegoke A Ojewole, Murat Efe Guney, Stella Biderman, Andrew M Watkins, Stephen Ra, Pablo Ribalta Lorenzo, Lucas Nivon, Brian D Weitzner, Yih-En Andrew Ban, Shiyang Chen, Minjia Zhang, Conglong Li, Shuaiwen Leon Song, Yuxiong He, Peter Karl Sorger, Emad Mostaque, Zhao Zhang, Richard Bonneau, Mohammed AlQuraishi
OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization. Nature methods 21 (8) (2024)
Gustaf Ahdritz, Nazim Bouatta, Christina Floristean, Sachin Kadyan, Qinghui Xia, William Gerecke, Timothy J O'Donnell, Daniel Berenberg, Ian Fisk, Niccolò Zanichelli, Bo Zhang, Arkadiusz Nowaczynski, Bei Wang, Marta M Stepniewska-Dziubinska, Shang Zhang, Adegoke A Ojewole, Murat Efe Guney, Stella Biderman, Andrew M Watkins, Stephen Ra, Pablo Ribalta Lorenzo, Lucas Nivon, Brian D Weitzner, Yih-En Andrew Ban, Shiyang Chen, Minjia Zhang, Conglong Li, Shuaiwen Leon Song, Yuxiong He, Peter Karl Sorger, Emad Mostaque, Zhao Zhang, Richard Bonneau, Mohammed AlQuraishi
OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization. Nature methods 21 (8) (2024)
Zachary H Walsh, Parin Shah, Neeharika Kothapalli, Shivem B Shah, Gergő Nikolényi, D Zack Brodtman, Giuseppe Leuzzi, Meri Rogava, Michael Mu, Patricia Ho, Sinan Abuzaid, Neil Vasan, Mohammed AlQuraishi, Joshua D Milner, Alberto Ciccia, Johannes C Melms, Benjamin Izar
Mapping variant effects on anti-tumor hallmarks of primary human T cells with base-editing screens. Nature biotechnology (2024)
Gustaf Ahdritz, Nazim Bouatta, Christina Floristean, Sachin Kadyan, Qinghui Xia, William Gerecke, Timothy J O'Donnell, Daniel Berenberg, Ian Fisk, Niccolò Zanichelli, Bo Zhang, Arkadiusz Nowaczynski, Bei Wang, Marta M Stepniewska-Dziubinska, Shang Zhang, Adegoke A Ojewole, Murat Efe Guney, Stella Biderman, Andrew M Watkins, Stephen Ra, Pablo Ribalta Lorenzo, Lucas Nivon, Brian D Weitzner, Yih-En Andrew Ban, Shiyang Chen, Minjia Zhang, Conglong Li, Shuaiwen Leon Song, Yuxiong He, Peter Karl Sorger, Emad Mostaque, Zhao Zhang, Richard Bonneau, Mohammed AlQuraishi
OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization. Nature methods (2024)
Gustaf Ahdritz, Nazim Bouatta, Christina Floristean, Sachin Kadyan, Qinghui Xia, William Gerecke, Timothy J O'Donnell, Daniel Berenberg, Ian Fisk, Niccolò Zanichelli, Bo Zhang, Arkadiusz Nowaczynski, Bei Wang, Marta M Stepniewska-Dziubinska, Shang Zhang, Adegoke A Ojewole, Murat Efe Guney, Stella Biderman, Andrew M Watkins, Stephen Ra, Pablo Ribalta Lorenzo, Lucas Nivon, Brian D Weitzner, Yih-En Andrew Ban, Shiyang Chen, Minjia Zhang, Conglong Li, Shuaiwen Leon Song, Yuxiong He, Peter Karl Sorger, Emad Mostaque, Zhao Zhang, Richard Bonneau, Mohammed AlQuraishi
OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization. Nature methods (2024)
Julia R Rogers, Gergő Nikolényi, Mohammed AlQuraishi
Growing ecosystem of deep learning methods for modeling protein-protein interactions. Protein engineering, design & selection : PEDS 36 (2023)
Nazim Bouatta, Mohammed AlQuraishi
Structural biology at the scale of proteomes. Nature structural & molecular biology 30 (2) (2023)
Nazim Bouatta, Mohammed AlQuraishi
Structural biology at the scale of proteomes. Nature structural & molecular biology 30 (2) (2023)
Nazim Bouatta, Mohammed AlQuraishi
Structural biology at the scale of proteomes. Nature structural & molecular biology 30 (2) (2023)
Julia R Rogers, Gergő Nikolényi, Mohammed AlQuraishi
Growing ecosystem of deep learning methods for modeling protein-protein interactions. Protein engineering, design & selection : PEDS (2023)
Ratul Chowdhury, Nazim Bouatta, Surojit Biswas, Christina Floristean, Anant Kharkar, Koushik Roy, Charlotte Rochereau, Gustaf Ahdritz, Joanna Zhang, George M Church, Peter Karl Sorger, Mohammed AlQuraishi
Single-sequence protein structure prediction using a language model and deep learning. Nature biotechnology 40 (11) (2022)
Mohammed AlQuraishi, Peter Karl Sorger
Differentiable biology: using deep learning for biophysics-based and data-driven modeling of molecular mechanisms. Nature methods 18 (10) (2021)
Joseph M Cunningham, Grigoriy Koytiger, Peter Karl Sorger, Mohammed AlQuraishi
Biophysical prediction of protein-peptide interactions and signaling networks using machine learning. Nature methods 17 (2) (2020)
Mohammed AlQuraishi
Parallelized Natural Extension Reference Frame: Parallelized Conversion from Internal to Cartesian Coordinates. Journal of computational chemistry 40 (7) (2019)
Mohammed AlQuraishi
ProteinNet: a standardized data set for machine learning of protein structure. BMC bioinformatics 20 (1) (2019)
Ethan C Alley, Grigory Khimulya, Surojit Biswas, Mohammed AlQuraishi, George M Church
Unified rational protein engineering with sequence-based deep representation learning. Nature methods 16 (12) (2019)

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Publication Activity (10 Years)

Top Topics

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Mohammed AlQuraishi