Protein engineering, design & selection : PEDS

Keyphrases

Publications

2024

Robert B Lee, Sainiteesh Maddineni, Madeleine Landry, Celeste Diaz, Aanya Tashfeen, Sean A Yamada-Hunter, Crystal L Mackall, Corinne Beinat, John B Sunwoo, Jennifer R Cochran
An engineered NKp46 antibody for construction of multi-specific NK cell engagers. Protein engineering, design & selection : PEDS (2024)
Shuang Wu, Joni Tsukuda, Nancy Chiang, Hao To, Yongmei Chen, Isidro Hötzel, Sowmya Balasubramanian, Gerald Nakamura, Ryan L Kelly
High titer expression of antibodies using linear expression cassettes for early-stage functional screening. Protein engineering, design & selection : PEDS (2024)
Jacob Kronenberg, Dustin Britton, Leif Halvorsen, Stanley Chu, Maria Jinu Kulapurathazhe, Jason Chen, Ashwitha Lakshmi, P Douglas Renfrew, Richard Bonneau, Jin Kim Montclare
Supercharged Phosphotriesterase for improved Paraoxon activity. Protein engineering, design & selection : PEDS (2024)
Noelia Ferruz, Amelie Stein
Computational Methods for Protein Design. Protein engineering, design & selection : PEDS (2024)
Ankush Garg, Nicolas S González-Foutel, Maciej B Gielnik, Magnus Kjaergaard
Design of functional intrinsically disordered proteins. Protein engineering, design & selection : PEDS (2024)
Guillem Casadevall, Jordi Casadevall, Cristina Duran, Sílvia Osuna
The shortest path method (SPM) webserver for computational enzyme design. Protein engineering, design & selection : PEDS (2024)
Yvonne Joho, Vanessa Vongsouthi, Chloe Gomez, Joachim S Larsen, Albert Ardevol, Colin J Jackson
Improving plastic degrading enzymes via directed evolution. Protein engineering, design & selection : PEDS (2024)
Srinivas S Thota, Grace L Allen, Ashley K Grahn, Brian K Kay
Engineered FHA domains can bind to a variety of Phosphothreonine-containing peptides. Protein engineering, design & selection : PEDS (2024)
Leonardo V Castorina, Suleyman Mert Ünal, Kartic Subr, Christopher W Wood
TIMED-Design: Flexible and Accessible Protein Sequence Design with Convolutional Neural Networks. Protein engineering, design & selection : PEDS (2024)
Samantha G Martinusen, Ethan W Slaton, Sage E Nelson, Marian A Pulgar, Julia T Besu, Cassidy F Simas, Carl A Denard
Modular and integrative activity reporters enhance biochemical studies in the yeast ER. Protein engineering, design & selection : PEDS (2024)
Nandan Haloi, Shan Huang, Aaron L Nichols, Eve J Fine, Nicholas J Friesenhahn, Christopher B Marotta, Dennis A Dougherty, Erik Lindahl, Rebecca J Howard, Stephen L Mayo, Henry A Lester
Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids. Protein engineering, design & selection : PEDS (2024)
Gregory H Nielsen, Zachary D Schmitz, Benjamin J Hackel
Sequence-developability mapping of affibody and fibronectin paratopes via library-scale variant characterization. Protein engineering, design & selection : PEDS (2024)
Samantha G Martinusen, Ethan W Slaton, Sage E Nelson, Marian A Pulgar, Julia T Besu, Cassidy F Simas, Carl A Denard
Modular and integrative activity reporters enhance biochemical studies in the yeast ER. Protein engineering, design & selection : PEDS (2024)
Nandan Haloi, Shan Huang, Aaron L Nichols, Eve J Fine, Nicholas J Friesenhahn, Christopher B Marotta, Dennis A Dougherty, Erik Lindahl, Rebecca J Howard, Stephen L Mayo, Henry A Lester
Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids. Protein engineering, design & selection : PEDS (2024)
Jonathan Collins, Benjamin J Hackel
Sequence-activity mapping via depletion reveals striking mutational tolerance and elucidates functional motifs in Tur1a antimicrobial peptide. Protein engineering, design & selection : PEDS (2024)

volume 37, 2024

Gregory H Nielsen, Zachary D Schmitz, Benjamin J Hackel
Sequence-developability mapping of affibody and fibronectin paratopes via library-scale variant characterization. Protein engineering, design & selection : PEDS 37 (2024)
Nandan Haloi, Shan Huang, Aaron L Nichols, Eve J Fine, Nicholas J Friesenhahn, Christopher B Marotta, Dennis A Dougherty, Erik Lindahl, Rebecca J Howard, Stephen L Mayo, Henry A Lester
Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids. Protein engineering, design & selection : PEDS 37 (2024)
Gregory H Nielsen, Zachary D Schmitz, Benjamin J Hackel
Sequence-developability mapping of affibody and fibronectin paratopes via library-scale variant characterization. Protein engineering, design & selection : PEDS 37 (2024)
Noelia Ferruz, Amelie Stein
Computational methods for protein design. Protein engineering, design & selection : PEDS 37 (2024)
Leonardo V Castorina, Suleyman Mert Ünal, Kartic Subr, Christopher W Wood
TIMED-Design: flexible and accessible protein sequence design with convolutional neural networks. Protein engineering, design & selection : PEDS 37 (2024)
Samantha G Martinusen, Ethan W Slaton, Sage E Nelson, Marian A Pulgar, Julia T Besu, Cassidy F Simas, Carl A Denard
Modular and integrative activity reporters enhance biochemical studies in the yeast ER. Protein engineering, design & selection : PEDS 37 (2024)
Nathan Guerin, Henry Childs, Pei Zhou, Bruce R Donald
DexDesign: an OSPREY-based algorithm for designing de novo D-peptide inhibitors. Protein engineering, design & selection : PEDS 37 (2024)
Nathan Guerin, Henry Childs, Pei Zhou, Bruce R Donald
DexDesign: an OSPREY-based algorithm for designing de novo D-peptide inhibitors. Protein engineering, design & selection : PEDS 37 (2024)
Gregory H Nielsen, Zachary D Schmitz, Benjamin J Hackel
Sequence-developability mapping of affibody and fibronectin paratopes via library-scale variant characterization. Protein engineering, design & selection : PEDS 37 (2024)
Nathan Guerin, Henry Childs, Pei Zhou, Bruce R Donald
DexDesign: an OSPREY-based algorithm for designing de novo D-peptide inhibitors. Protein engineering, design & selection : PEDS 37 (2024)
Shuang Wu, Joni Tsukuda, Nancy Chiang, To Hao, Yongmei Chen, Isidro Hötzel, Sowmya Balasubramanian, Gerald Nakamura, Ryan L Kelly
High titer expression of antibodies using linear expression cassettes for early-stage functional screening. Protein engineering, design & selection : PEDS 37 (2024)
Leonardo V Castorina, Suleyman Mert Ünal, Kartic Subr, Christopher W Wood
TIMED-Design: flexible and accessible protein sequence design with convolutional neural networks. Protein engineering, design & selection : PEDS 37 (2024)
Shuang Wu, Joni Tsukuda, Nancy Chiang, To Hao, Yongmei Chen, Isidro Hötzel, Sowmya Balasubramanian, Gerald Nakamura, Ryan L Kelly
High titer expression of antibodies using linear expression cassettes for early-stage functional screening. Protein engineering, design & selection : PEDS 37 (2024)
Gregory H Nielsen, Zachary D Schmitz, Benjamin J Hackel
Sequence-developability mapping of affibody and fibronectin paratopes via library-scale variant characterization. Protein engineering, design & selection : PEDS 37 (2024)
Robert B Lee, Sainiteesh Maddineni, Madeleine Landry, Celeste Diaz, Aanya Tashfeen, Sean A Yamada-Hunter, Crystal L Mackall, Corinne Beinat, John B Sunwoo, Jennifer R Cochran
An engineered NKp46 antibody for construction of multi-specific NK cell engagers. Protein engineering, design & selection : PEDS 37 (2024)
Guillem Casadevall, Jordi Casadevall, Cristina Duran, Sílvia Osuna
The shortest path method (SPM) webserver for computational enzyme design. Protein engineering, design & selection : PEDS 37 (2024)
Yvonne Joho, Vanessa Vongsouthi, Chloe Gomez, Joachim S Larsen, Albert Ardevol, Colin J Jackson
Improving plastic degrading enzymes via directed evolution. Protein engineering, design & selection : PEDS 37 (2024)
Samantha G Martinusen, Ethan W Slaton, Sage E Nelson, Marian A Pulgar, Julia T Besu, Cassidy F Simas, Carl A Denard
Modular and integrative activity reporters enhance biochemical studies in the yeast ER. Protein engineering, design & selection : PEDS 37 (2024)
Yvonne Joho, Vanessa Vongsouthi, Chloe Gomez, Joachim S Larsen, Albert Ardevol, Colin J Jackson
Improving plastic degrading enzymes via directed evolution. Protein engineering, design & selection : PEDS 37 (2024)
Ankush Garg, Nicolas S González-Foutel, Maciej B Gielnik, Magnus Kjaergaard
Design of functional intrinsically disordered proteins. Protein engineering, design & selection : PEDS 37 (2024)
Yvonne Joho, Vanessa Vongsouthi, Chloe Gomez, Joachim S Larsen, Albert Ardevol, Colin J Jackson
Improving plastic degrading enzymes via directed evolution. Protein engineering, design & selection : PEDS 37 (2024)
Jonathan Collins, Benjamin J Hackel
Sequence-activity mapping via depletion reveals striking mutational tolerance and elucidates functional motifs in Tur1a antimicrobial peptide. Protein engineering, design & selection : PEDS 37 (2024)
Nandan Haloi, Shan Huang, Aaron L Nichols, Eve J Fine, Nicholas J Friesenhahn, Christopher B Marotta, Dennis A Dougherty, Erik Lindahl, Rebecca J Howard, Stephen L Mayo, Henry A Lester
Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids. Protein engineering, design & selection : PEDS 37 (2024)
Jonathan Collins, Benjamin J Hackel
Sequence-activity mapping via depletion reveals striking mutational tolerance and elucidates functional motifs in Tur1a antimicrobial peptide. Protein engineering, design & selection : PEDS 37 (2024)
Yvonne Joho, Vanessa Vongsouthi, Chloe Gomez, Joachim S Larsen, Albert Ardevol, Colin J Jackson
Improving plastic degrading enzymes via directed evolution. Protein engineering, design & selection : PEDS 37 (2024)
Yufeng Liu, Haiyan Liu
Protein sequence design on given backbones with deep learning. Protein engineering, design & selection : PEDS 37 (2024)
Leonardo V Castorina, Suleyman Mert Ünal, Kartic Subr, Christopher W Wood
TIMED-Design: flexible and accessible protein sequence design with convolutional neural networks. Protein engineering, design & selection : PEDS 37 (2024)
Robert B Lee, Sainiteesh Maddineni, Madeleine Landry, Celeste Diaz, Aanya Tashfeen, Sean A Yamada-Hunter, Crystal L Mackall, Corinne Beinat, John B Sunwoo, Jennifer R Cochran
An engineered NKp46 antibody for construction of multi-specific NK cell engagers. Protein engineering, design & selection : PEDS 37 (2024)
Robert B Lee, Sainiteesh Maddineni, Madeleine Landry, Celeste Diaz, Aanya Tashfeen, Sean A Yamada-Hunter, Crystal L Mackall, Corinne Beinat, John B Sunwoo, Jennifer R Cochran
An engineered NKp46 antibody for construction of multi-specific NK cell engagers. Protein engineering, design & selection : PEDS 37 (2024)
Nathan Guerin, Henry Childs, Pei Zhou, Bruce R Donald
DexDesign: an OSPREY-based algorithm for designing de novo D-peptide inhibitors. Protein engineering, design & selection : PEDS 37 (2024)
Samantha G Martinusen, Ethan W Slaton, Sage E Nelson, Marian A Pulgar, Julia T Besu, Cassidy F Simas, Carl A Denard
Modular and integrative activity reporters enhance biochemical studies in the yeast ER. Protein engineering, design & selection : PEDS 37 (2024)

volume 36, 2023

Julia R Rogers, Gergő Nikolényi, Mohammed AlQuraishi
Growing ecosystem of deep learning methods for modeling protein-protein interactions. Protein engineering, design & selection : PEDS 36 (2023)
Frederick S Lee, Amos G Anderson, Barry D Olafson
Benchmarking TriadAb using targets from the second antibody modeling assessment. Protein engineering, design & selection : PEDS 36 (2023)
Arlinda Rezhdo, Catherine T Lessard, Mariha Islam, James A Van Deventer
Strategies for enriching and characterizing proteins with inhibitory properties on the yeast surface. Protein engineering, design & selection : PEDS 36 (2023)
Arlinda Rezhdo, Catherine T Lessard, Mariha Islam, James A Van Deventer
Strategies for enriching and characterizing proteins with inhibitory properties on the yeast surface. Protein engineering, design & selection : PEDS 36 (2023)