Alisdair Robert Fernie (Alisdair R Fernie, Alisdair Fernie)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 186

Top Venues

The Plant journal : for cell and molecular biology

Plant physiology

The Plant cell

The New phytologist

This page only lists publications with an associated author ORCID identifier.

Publications

Jennifer Bortlik, Jost Lühle, Saleh Alseekh, Christoph Weiste, Alisdair Robert Fernie, Wolfgang Dröge-Laser, Frederik Börnke
DOMAIN OF UNKNOWN FUNCTION581-9 negatively regulates SnRK1 kinase activity. Plant physiology (2023)
Priscille Steensma, Marion Eisenhut, Maite Colinas, Laise Rosado de Souza, Alisdair Robert Fernie, Andreas P M Weber, Teresa B Fitzpatrick
PYRIDOX(AM)INE 5'-PHOSPHATE OXIDASE3 of Arabidopsis thaliana maintains carbon/nitrogen balance in distinct environmental conditions. Plant physiology (2023)
Philippe Nicolas, Richard J Pattison, Yi Zheng, Taly Lapidot-Cohen, Yariv Brotman, Sonia Osorio, Alisdair Robert Fernie, Zhangjun Fei, Carmen Catalá
Starch deficiency in tomato causes transcriptional reprogramming that modulates fruit development, metabolism and stress responses. Journal of experimental botany (2023)
Itay Zemach, Saleh Alseekh, Roni Tadmor-Levi, Josef Fisher, Shai Torgeman, Shay Trigerman, Julia Nauen, Shdema Filler Hayut, Varda Mann, Edan Rochsar, Richard Finkers, Regina Wendenburg, Sonia Osorio, Susan Bergmann, John E Lunn, Yaniv Semel, Joseph Hirschberg, Alisdair Robert Fernie, Dani Zamir
Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity. The Plant journal : for cell and molecular biology (2023)
Chang Su, Andrzej Kokosza, Xiaonan Xie, Aleš Pĕnčík, Youjun Zhang, Pasi Raumonen, Xueping Shi, Sampo Muranen, Melis Kucukoglu Topcu, Juha Immanen, Risto Hagqvist, Omid Safronov, Juan Alonso-Serra, Gugan Eswaran, Mirko Pavicic Venegas, Karen Ljung, Sally Ward, Anne-Maarit Bågman, Kristiina Himanen, Jarkko Salojärvi, Alisdair Robert Fernie, Ondřej Novák, Ottoline Leyser, Wojtek Pałubicki, Yrjö Helariutta, Kaisa Nieminen
Tree architecture: A strigolactone-deficient mutant reveals a connection between branching order and auxin gradient along the tree stem. Proceedings of the National Academy of Sciences of the United States of America 120 (48) (2023)
Jorge Gago, Miquel Nadal, Maria Jose Clemente-Moreno, Carlos María Figueroa, David Barbosa Medeiros, Neus Cubo-Ribas, Lohengrin Alexis Cavieres, Javier Gulías, Alisdair Robert Fernie, Jaume Flexas, Leon Aloys Bravo
Nutrient availability regulates Deschampsia antarctica photosynthetic and stress tolerance performance in Antarctica. Journal of experimental botany (2023)
Matthew W Chmielewski, Skyler Naya, Monica Borghi, Jen Cortese, Alisdair Robert Fernie, Mark T Swartz, Konstantina Zografou, Brent J Sewall, Rachel B Spigler
Phenology and foraging bias contribute to sex-specific foraging patterns in the rare declining butterfly Argynnis idalia idalia . Ecology and evolution 13 (7) (2023)
Feng Zhu, Weiwei Wen, Yunjiang Cheng, Saleh Alseekh, Alisdair Robert Fernie
Integrating multiomics data accelerates elucidation of plant primary and secondary metabolic pathways. aBIOTECH 4 (1) (2023)
Fayezeh Aarabi, Andrea Ghigi, Micha Wijesingha Ahchige, Mustafa Bulut, Peter Geigenberger, Horst Ekkehard Neuhaus, Arun Sampathkumar, Saleh Alseekh, Alisdair Robert Fernie
Genome-Wide Association Study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation. Plant physiology (2023)
Asaph Aharoni, Royston Goodacre, Alisdair Robert Fernie
Plant and microbial sciences as key drivers in the development of metabolomics research. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
Rhowell Jr N Tiozon, Nese Sreenivasulu, Saleh Alseekh, Kristel June D Sartagoda, Björn Usadel, Alisdair Robert Fernie
Metabolomics and machine learning technique revealed that germination enhances the multi-nutritional properties of pigmented rice. Communications biology 6 (1) (2023)
Thekla von Bismarck, Philipp Wendering, Leonardo Perez de Souza, Jeremy Ruß, Linnéa Strandberg, Elmien Heyneke, And Berkley J Walker, Mark Aurel Schöttler, Alisdair Robert Fernie, Zoran Nikoloski, Ute Armbruster
Growth in fluctuating light buffers plants against photorespiratory perturbations. Nature communications 14 (1) (2023)
Anting Zhu, Mengmeng Liu, Zhitao Tian, Wei Liu, Xin Hu, Min Ao, Jingqi Jia, Taotao Shi, Hongbo Liu, Dongqin Li, Hailiang Mao, Handong Su, Wenhao Yan, Qiang Li, Caixia Lan, Alisdair Robert Fernie, Wei Chen
Chemical-tag-based semi-annotated metabolomics facilitates gene identification and specialized metabolic pathway elucidation in wheat. The Plant cell (2023)
Songtao Gui, Félix Juan Martínez Rivas, Weiwei Wen, Minghui Meng, Jianbing Yan, Björn Usadel, Alisdair Robert Fernie
Going broad and deep: sequencing-driven insights into plant physiology, evolution, and crop domestication. The Plant journal : for cell and molecular biology 113 (3) (2023)
Félix Juan Martínez Rivas, Rosario Blanco-Portales, María Pérez-Serratosa, Pablo Ric-Varas, Víctor Guerrero Sánchez, Laura Medina-Puche, Lourdes Moyano, José Ángel Mercado, Saleh Alseekh, José Luis Caballero, Alisdair Robert Fernie, Juan Muñoz-Blanco, Francisco Javier Molina-Hidalgo
FaMYB123 interacts with FabHLH3 to regulate the late steps of anthocyanin and flavonol accumulation during ripening. The Plant journal : for cell and molecular biology (2023)
Dennis Schlossarek, Youjun Zhang, Ewelina M Sokolowska, Alisdair Robert Fernie, Marcin Luzarowski, Aleksandra Skirycz
Don't let go: co-fractionation mass spectrometry for untargeted mapping of protein-metabolite interactomes. The Plant journal : for cell and molecular biology 113 (5) (2023)
Félix Juan Martínez Rivas, Rosario Blanco-Portales, María P Serratosa, Pablo Ric-Varas, Victor M Guerrero-Sánchez, Laura Medina-Puche, Lourdes Moyano, José A Mercado, Saleh Alseekh, José L Caballero, Alisdair Robert Fernie, Juan Muñoz-Blanco, Francisco Javier Molina-Hidalgo
FaMYB123 interacts with FabHLH3 to regulate the late steps of anthocyanin and flavonol biosynthesis during ripening. The Plant journal : for cell and molecular biology (2023)
Asaph Aharoni, Royston Goodacre, Alisdair Robert Fernie
Plant and microbial sciences as key drivers in the development of metabolomics research. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
Youjun Zhang, Moxian Chen, Tieyuan Liu, Kezhen Qin, Alisdair Robert Fernie
TECHNICAL ADVANCE: Investigating the dynamics of protein-protein interactions in plants. The Plant journal : for cell and molecular biology (2023)
Elisa Bellucci, Andrea Benazzo, Chunming Xu, Elena Bitocchi, Monica Rodriguez, Saleh Alseekh, Valerio Di Vittori, Tania Gioia, Kerstin Neumann, Gaia Cortinovis, Giulia Frascarelli, Ester Murube, Emiliano Trucchi, Laura Nanni, Andrea Ariani, Giuseppina Logozzo, Jin Hee Shin, Chaochih Liu, Liang Jiang, Juan Jose Ferreira, Ana Campa, Giovanna Attene, Peter L Morrell, Giorgio Bertorelle, Andreas Graner, Paul Gepts, Alisdair Robert Fernie, Scott A Jackson, Roberto Papa
Selection and adaptive introgression guided the complex evolutionary history of the European common bean. Nature communications 14 (1) (2023)
Xiang Li, Denise Tieman, Saleh Alseekh, Alisdair Robert Fernie, Harry J Klee
Natural variations in the Sl-AKR9 aldo/keto reductase gene impact fruit flavor volatile and sugar contents. The Plant journal : for cell and molecular biology (2023)
Philippe Fuchs, Elisenda Feixes-Prats, Paulo Arruda, Elias Feitosa-Araújo, Alisdair Robert Fernie, Christopher Grefen, Sophie Lichtenauer, Nicole Linka, Ivan G Maia, Andreas J Meyer, Sören Schilasky, Alisdair R Fernie, Stefanie Wege, Andreas P M Weber, A Harvey Millar, Olivier Keech, Igor Florez-Sarasa, Pedro Barreto, Markus Schwarzländer
Plant Uncoupling Mitochondrial Protein 2 localizes to the Golgi. Plant physiology (2023)
Matteo Chialva, Davide Lucien Patono, Leonardo Perez de Souza, Mara Novero, Sara Vercellino, Moez Maghrebi, Michele Morgante, Claudio Lovisolo, Gianpiero Vigani, Alisdair Robert Fernie, Valentina Fiorilli, Luisa Lanfranco, Paola Bonfante
The mycorrhizal root-shoot axis elicits Coffea arabica growth under low phosphate conditions. The New phytologist (2023)
Saleh Alseekh, Esra Karakas, Feng Zhu, Micha Wijesingha Ahchige, Alisdair Robert Fernie
Plant biochemical genetics in the multiomics era. Journal of experimental botany (2023)
Dennis Schlossarek, Youjun Zhang, Ewelina M Sokolowska, Alisdair Robert Fernie, Marcin Luzarowski, Aleksandra Skirycz
Don't let go: co-fractionation mass spectrometry for untargeted mapping of protein-metabolite interactomes. The Plant journal : for cell and molecular biology 113 (5) (2023)
Fayezeh Aarabi, Mohamed A Salem, Stephanie Arrivault, Mustafa Bulut, Mark Aurel Schöttler, Patrick Giavalisco, Alisdair Robert Fernie, Rainer Hoefgen
The regulation of sulfolipids under sulfur starvation. Plant molecular biology (2023)
Songtao Gui, Félix Juan Martínez Rivas, Weiwei Wen, Minghui Meng, Jianbing Yan, Björn Usadel, Alisdair Robert Fernie
Going broad and deep: sequencing-driven insights into plant physiology, evolution, and crop domestication. The Plant journal : for cell and molecular biology 113 (3) (2023)
Songtao Gui, Félix Juan Martínez Rivas, Weiwei Wen, Minghui Meng, Jianbing Yan, Björn Usadel, Alisdair Robert Fernie
Going broad and deep: sequencing-driven insights into plant physiology, evolution, and crop domestication. The Plant journal : for cell and molecular biology 113 (3) (2023)
Dennis Schlossarek, Youjun Zhang, Ewelina M Sokolowska, Alisdair Robert Fernie, Marcin Luzarowski, Aleksandra Skirycz
Don't let go: co-fractionation mass spectrometry for untargeted mapping of protein-metabolite interactomes. The Plant journal : for cell and molecular biology 113 (5) (2023)
Thomas Naake, Feng Zhu, Saleh Alseekh, Federico Scossa, Leonardo Perez de Souza, Monica Borghi, Yariv Brotman, Tetsuya Mori, Ryo Nakabayashi, Takayuki Tohge, Alisdair Robert Fernie
Genome-wide association studies identify loci controlling specialized seed metabolites in Arabidopsis. Plant physiology (2023)
Elzbieta Sarnowska, Szymon Kubala, Pawel Cwiek, Sebastian P Sacharowski, Paulina Oksinska, Jaroslaw Steciuk, Magdalena Zaborowska, Jakub M Szurmak, Roman Dubianski, Anna Maassen, Malgorzata Stachowiak, Bruno Huettel, Monika Ciesla, Klaudia Nowicka, Anna T Rolicka, Saleh Alseekh, Ernest Bucior, Rainer Franzen, Anna Skoneczna, Malgorzata A Domagalska, Samija Amar, Mohammad-Reza Hajirezaei, Janusz A Siedlecki, Alisdair Robert Fernie, Seth J Davis, Tomasz J Sarnowski
A non-canonical function of Arabidopsis ERECTA proteins and a role of the SWI3B subunit of the SWI/SNF chromatin remodeling complex in gibberellin signaling. The Plant journal : for cell and molecular biology (2023)
Itay Zemach, Saleh Alseekh, Roni Tadmor-Levi, Josef Fisher, Shai Torgeman, Shay Trigerman, Julia Nauen, Shdema Filler Hayut, Varda Mann, Edan Rochsar, Richard Finkers, Regina Wendenberg, Sonia Osorio, Susan Bergmann, John E Lunn, Yaniv Semel, Joseph Hirschberg, Alisdair Robert Fernie, Dani Zamir
Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity. The Plant journal : for cell and molecular biology (2023)
Leonardo Perez de Souza, Alisdair Robert Fernie
Computational methods for processing and interpreting mass spectrometry-based metabolomics. Essays in biochemistry (2023)
Jonas Giese, Jürgen Eirich, Dirk Walther, Youjun Zhang, Ines Lassowskat, Alisdair Robert Fernie, Marlene Elsässer, Verónica G Maurino, Markus Schwarzländer, Iris Finkemeier
The interplay of post-translational protein modifications in Arabidopsis leaves during photosynthesis induction. The Plant journal : for cell and molecular biology (2023)
Félix Juan Martínez Rivas, Rosario Blanco-Portales, María Pérez-Serratosa, Pablo Ric-Varas, Víctor Guerrero Sánchez, Laura Medina Puche, Lourdes Moyano, José Ángel Mercado, Saleh Alseekh, José Luis Caballero, Alisdair Robert Fernie, Juan Muñoz-Blanco, Francisco Javier Molina-Hidalgo
FaMYB123 interacts with FabHLH3 to regulate the late steps of anthocyanin and flavonol accumulation during ripening. The Plant journal : for cell and molecular biology (2023)
Takuya Yoshida, Alisdair Robert Fernie
Hormonal regulation of plant primary metabolism under drought. Journal of experimental botany (2023)
Christian E Lamm, Ismail Y Rabbi, David Barbosa Medeiros, Laise Rosado-Souza, Benjamin Pommerrenig, Ismail Dahmani, David Rüscher, Jörg Hofmann, Anna M van Doorn, Armin Schlereth, Horst Ekkehard Neuhaus, Alisdair Robert Fernie, Uwe Sonnewald, Wolfgang Zierer
Efficient sugar utilization and transition from oxidative to substrate-level phosphorylation in high starch storage roots of African cassava genotypes. The Plant journal : for cell and molecular biology (2023)
Alejandra Duque-Jaramillo, Nina Ulmer, Saleh Alseekh, Ilja Bezrukov, Alisdair Robert Fernie, Aleksandra Skirycz, Talia L Karasov, Detlef Weigel
The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava. The New phytologist (2023)
Hongjian Wan, Youjun Zhang, Limin Wu, Guozhi Zhou, Luzhao Pan, Alisdair Robert Fernie, Yong-Ling Ruan
Evolution of cytosolic and organellar invertases empowered the colonization and thriving of land plants. Plant physiology (2023)
Camila Caldana, Fernando Carrari, Alisdair Robert Fernie, Arun Sampathkumar
Perspective: How metabolism and development are intertwined in space and time. The Plant journal : for cell and molecular biology (2023)
Feng Zhu, Yuming Sun, Sagar Sudam Jadhav, Yunjiang Cheng, Saleh Alseekh, Alisdair Robert Fernie
The Plant Metabolic Changes and the Physiological and Signaling Functions in the Responses to Abiotic Stress. Methods in molecular biology (Clifton, N.J.) 2642 (2023)
Micha Wijesingha Ahchige, Alisdair Robert Fernie, Saleh Alseekh
PANTOTHENATE KINASE4, LOSS OF GDU2, and TRANSPOSON PROTEIN1 affect the canalization of tomato fruit metabolism. Plant physiology (2023)
Ismail Dahmani, Kezhen Qin, Youjun Zhang, Alisdair Robert Fernie
The Formation and Function of Plant Metabolons. The Plant journal : for cell and molecular biology (2023)
Jorge Solis-Miranda, Monika Kosmacz, Aleksandra Skirycz, Alisdair Robert Fernie, Panagiotis Nikolaou Moschou, Peter V Bozhkov, Emilio Gutierrez-Beltran
Stress-related biomolecular condensates in plants. The Plant cell (2023)
Cristina Mª López, Saleh Alseekh, Fernando Torralbo, Félix J Martínez Rivas, Alisdair Robert Fernie, Francisco Amil, Josefa M Alamillo
Transcriptomic and metabolomic analysis reveals that symbiotic nitrogen fixation enhances drought resistance in common bean. Journal of experimental botany (2023)
Mustafa Bulut, Regina Wendenburg, Elena Bitocchi, Elisa Bellucci, Magdalena Kroc, Tania Gioia, Karolina Susek, Roberto Papa, Alisdair Robert Fernie, Saleh Alseekh
A Comprehensive Metabolomics and Lipidomics Atlas for the Legumes Common Bean, Chickpea, Lentil and Lupin. The Plant journal : for cell and molecular biology (2023)
Dejan Dziubek, Louis Poeker, Beata Siemiątkowska, Alexander Graf, Giada Marino, Saleh Alseekh, Stephanie Arrivault, Alisdair Robert Fernie, Ute Armbruster, Peter Geigenberger
NTRC and thioredoxins m1/m2 underpin the light acclimation of plants on proteome and metabolome levels. Plant physiology (2023)
Urszula Luzarowska, Anne-Kathrin Ruß, Jérôme Joubes, Marguerite Batsale, Jedrzej Jakub Szymanski, Venkatesh Periyakavanam Thirumalaikumar, Marcin Luzarowski, Si Wu, Feng Zhu, Niklas Sebastian Endres, Sarah Khedhayir, Julia Schumacher, Weronika Jasinska, Ke Xu, Sandra Marcela Correa Cordoba, Simy Weil, Aleksandra Skirycz, Alisdair Robert Fernie, Yonghua Li-Beisson, Corina M Fusari, Yariv Brotman
Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana. The Plant cell (2023)
Clara Segarra-Medina, Lidia S Pascual, Saleh Alseekh, Alisdair Robert Fernie, José Luis Rambla, Aurelio Gomez-Cadenas, Sara I Zandalinas
Comparison of metabolomic reconfiguration between Columbia and Landsberg ecotypes subjected to the combination of high salinity and increased irradiance. BMC plant biology 23 (1) (2023)
Sandra Marcela Correa Cordoba, Hao Tong, Asdrúbal Burgos, Feng Zhu, Saleh Alseekh, Alisdair Robert Fernie, Zoran Nikoloski
Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism. Nature communications 14 (1) (2023)
Félix Juan Martínez Rivas, Alisdair Robert Fernie
The use of metabolomics to understand aspects of metabolic regulation underpinning fruit ripening, development, and quality. Journal of experimental botany (2023)
Hui Li, Ronghui Che, Jiantang Zhu, Xiaohong Yang, Jiansheng Li, Alisdair Robert Fernie, Jianbing Yan
Multi-omics-driven advances in the understanding of triacylglycerol biosynthesis in oil seeds. The Plant journal : for cell and molecular biology (2023)
Sara Rosa-Téllez, Andrea Alcántara-Enguídanos, Federico Martinez-Seidel, Ruben Casatejada-Anchel, Sompop Saeheng, Clayton L Bailes, Alexander Erban, David Barbosa Medeiros, Paula Alepúz, José Tomás Matus, Joachim Kopka, Jesús Muñoz-Bertomeu, Stephan Krueger, Sanja Roje, Alisdair Robert Fernie, Roc Ros
The serine-glycine-one carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development. The Plant cell (2023)
Youjun Zhang, Alisdair Robert Fernie
The Role of TCA Cycle Enzymes in Plants. Advanced biology (2023)
Feng Zhu, Mustafa Bulut, Yunjiang Cheng, Saleh Alseekh, Alisdair Robert Fernie
Metabolite-Based Genome-Wide Association Studies of Large-Scale Metabolome Analysis to Illustrate Alterations in the Metabolite Landscape of Plants upon Responses to Stresses. Methods in molecular biology (Clifton, N.J.) 2642 (2023)
Haiji Qiu, Xiaoliang Zhang, Youjun Zhang, Xiaohui Jiang, Yujia Ren, Dawei Gao, Xiang Zhu, Björn Usadel, Alisdair Robert Fernie, Weiwei Wen
Depicting the genetic and metabolic panorama of chemical diversity in the tea plant. Plant biotechnology journal (2023)
Yue Jing, Mutsumi Watanabe, Fayezeh Aarabi, Alisdair Robert Fernie, Monica Borghi, Takayuki Tohge
Cross-Species Metabolomic Analyses In The Brassicaceae Reveals Common Responses To Ultraviolet-B Exposure. Plant & cell physiology (2023)
Leonardo Perez de Souza, Elena Bitocchi, Roberto Papa, Takayuki Tohge, Alisdair Robert Fernie
Decreased metabolic diversity in common beans associated with domestication revealed by untargeted metabolomics, information theory, and molecular networking. The Plant journal : for cell and molecular biology (2023)
Shuangqian Shen, Shouchuang Wang, Chenkun Yang, Chao Wang, Qianqian Zhou, Shen Zhou, Ran Zhang, Yufei Li, Zixuan Wang, Liupan Dai, Wenjv Peng, Yingchen Hao, Hao Guo, Guangping Cao, Xianqing Liu, Fan Yao, Qiang Xu, Alisdair Robert Fernie, Jie Luo
Elucidation of the melitidin biosynthesis pathway in pummelo. Journal of integrative plant biology (2023)
Yuqi He, Kaixuan Zhang, Shijuan Li, Xiang Lu, Hui Zhao, Chaonan Guan, Xu Huang, Yaliang Shi, Zhen Kang, Yu Fan, Wei Li, Cheng Chen, Guangsheng Li, Ou Long, Yuanyuan Chen, Mang Hu, Jian-Ping Cheng, Bingliang Xu, Mark A Chapman, Milen I Georgiev, Alisdair Robert Fernie, Mei-Liang Zhou
Multi-omics analysis reveals the molecular mechanisms underlying virulence in Rhizoctonia and jasmonic acid-mediated resistance in Tartary buckwheat (Fagopyrum tataricum). The Plant cell (2023)
Feng Zhu, Mustafa Bulut, Yunjiang Cheng, Saleh Alseekh, Alisdair Robert Fernie
Metabolite-Based Genome-Wide Association Studies of Large-Scale Metabolome Analysis to Illustrate Alterations in the Metabolite Landscape of Plants upon Responses to Stresses. Methods in molecular biology (Clifton, N.J.) 2642 (2023)
Yuanyuan Lv, Jinjin Zhu, Sihui Huang, Xiaoli Xing, Shen Zhou, Hui Yao, Zhuang Yang, Ling Liu, Sishu Huang, Yuanyuan Miao, Xianqing Liu, Alisdair Robert Fernie, Yuanhao Ding, Jie Luo
Metabolome profiling and transcriptome analysis filling the early crucial missing steps of piperine biosynthesis in Piper nigrum L. The Plant journal : for cell and molecular biology (2023)
Asaph Aharoni, Royston Goodacre, Alisdair Robert Fernie
Plant and microbial sciences as key drivers in the development of metabolomics research. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
Dennis Schlossarek, Youjun Zhang, Ewelina M Sokolowska, Alisdair Robert Fernie, Marcin Luzarowski, Aleksandra Skirycz
Don't let go - co-fractionation mass spectrometry for untargeted mapping of protein-metabolite interactomes. The Plant journal : for cell and molecular biology (2022)
Fayezeh Aarabi, Apidet Rakpenthai, Rouhollah Barahimipour, Michał Gorka, Saleh Alseekh, Youjun Zhang, Mohamed A Salem, Franziska Brückner, Nooshin Omranian, Mutsumi Watanabe, Zoran Nikoloski, Patrick Giavalisco, Takayuki Tohge, Alexander Graf, Alisdair Robert Fernie, Rainer Hoefgen
Sulfur deficiency-induced genes affect seed protein accumulation and composition under sulfate deprivation. Plant physiology 187 (4) (2022)
Yoav Ahouvi, Zechariah Haber, Yair Yehoshua Zach, Leah Rosental, David Toubiana, Davinder Sharma, Saleh Alseekh, Hiromi Tajima, Alisdair Robert Fernie, Yariv Brotman, Eduardo Blumwald, Nir Sade
The Alteration Of Tomato CHLOROPLAST VESICULATION Positively Affects Whole-Plant Source-Sink Relations And Fruit Metabolism Under Stress Conditions. Plant & cell physiology (2022)
Katelyn Sageman-Furnas, Markus Nurmi, Meike Contag, Björn Plötner, Saleh Alseekh, Andrew Wiszniewski, Alisdair Robert Fernie, Lisa M Smith, Roosa A E Laitinen
A. thaliana Hybrids Develop Growth Abnormalities through Integration of Stress, Hormone and Growth Signaling. Plant & cell physiology 63 (7) (2022)
Hui Zhao, Yuqi He, Kaixuan Zhang, Shijuan Li, Yong Chen, Ming He, Feng He, Bin Gao, Di Yang, Yu Fan, Xuemei Zhu, Mingli Yan, Nathalie Giglioli-Guivarc'h, Christophe Hano, Alisdair Robert Fernie, Milen I Georgiev, Dagmar Janovská, Vladimir Meglič, Mei-Liang Zhou
Rewiring of the seed metabolome during Tartary buckwheat domestication. Plant biotechnology journal (2022)
Sofia Otero, Iris Gildea, Pawel Roszak, Yipeng Lu, Valerio Di Vittori, Matthieu Bourdon, Lothar Kalmbach, Bernhard Blob, Jung-Ok Heo, Federico Peruzzo, Thomas Laux, Alisdair Robert Fernie, Hugo Tavares, Yrjö Helariutta
A root phloem pole cell atlas reveals common transcriptional states in protophloem-adjacent cells. Nature plants 8 (8) (2022)
Sonja Blankenagel, Stella Eggels, Monika Frey, Erwin Grill, Eva Bauer, Corinna Dawid, Alisdair Robert Fernie, Georg Haberer, Richard Hammerl, David Barbosa Medeiros, Milena Ouzunova, Thomas Presterl, Victoria Ruß, Rudi Schäufele, Urte Schlüter, François Tardieu, Claude Urbany, Sebastian Urzinger, Andreas P M Weber, Chris-Carolin Schön, Viktoriya Avramova
Natural alleles of the abscisic acid catabolism gene ZmAbh4 modulate water use efficiency and carbon isotope discrimination in maize. The Plant cell 34 (10) (2022)
Alisdair Robert Fernie, Saleh Alseekh
Metabolomic selection-based machine learning improves fruit taste prediction. Proceedings of the National Academy of Sciences of the United States of America 119 (9) (2022)
Yuming Sun, Saleh Alseekh, Alisdair Robert Fernie
Plant secondary metabolic responses to global climate change: A meta-analysis in medicinal and aromatic plants. Global change biology (2022)
Alisdair Robert Fernie, Saleh Alseekh, Jie Liu, Jianbing Yan
Using precision phenotyping to inform de novo domestication. Plant physiology 186 (3) (2022)
Mohsen Hajheidari, Nina Gerlach, Kristof Dorau, M Amin Omidbakhshfard, Lina Pesch, Jörg Hofmann, Asis Hallab, Gabriel Y Ponce-Soto, Anastasiya Kuhalskaya, David B Medeiros, Amélia Bourceret, null null, Björn Usadel, Jochen Mayer, Alisdair Robert Fernie, Tim Mansfeldt, Uwe Sonnewald, Marcel Bucher
Crop genetic diversity uncovers metabolites, elements, and gene networks predicted to be associated with high plant biomass yields in maize. PNAS nexus 1 (3) (2022)
Abhishek Bohra, Abha Tiwari, Parwinder Kaur, Showkat Ahmad Ganie, Ali Raza, Manish Roorkiwal, Reyazul Rouf Mir, Alisdair Robert Fernie, Petr Smýkal, Rajeev Kumar Varshney
The Key to the Future Lies in the Past: Insights from Grain Legume Domestication and Improvement Should Inform Future Breeding Strategies. Plant & cell physiology 63 (11) (2022)
Zhuang Yang, Zhenhuan Liu, Hang Xu, Yufei Li, Sishu Huang, Guangping Cao, Mengwei Shi, Jinjin Zhu, Junjie Zhou, Runze Li, Yuanhao Ding, Yong Xiao, Xianqing Liu, Alisdair Robert Fernie, Jie Luo
ArecaceaeMDB: a comprehensive multi-omics database for Arecaceae breeding and functional genomics studies. Plant biotechnology journal (2022)
Mohsen Hajheidari, Nina Gerlach, Kristof Dorau, M Amin Omidbakhshfard, Lina Pesch, Jörg Hofmann, Asis Hallab, Gabriel Y Ponce-Soto, Anastasiya Kuhalskaya, David B Medeiros, Amélia Bourceret, null null, Björn Usadel, Jochen Mayer, Alisdair Robert Fernie, Tim Mansfeldt, Uwe Sonnewald, Marcel Bucher
Crop genetic diversity uncovers metabolites, elements, and gene networks predicted to be associated with high plant biomass yields in maize. PNAS nexus 1 (3) (2022)
David Barbosa Medeiros, Hirofumi Ishihara, Manuela Guenther, Laise Rosado de Souza, Alisdair Robert Fernie, Mark Stitt, Stephanie Arrivault
13CO2 labeling kinetics in maize reveal impaired efficiency of C4 photosynthesis under low irradiance. Plant physiology 190 (1) (2022)
Feng Zhu, Sagar Sudam Jadhav, Takayuki Tohge, Mohamed A Salem, Je Min Lee, James J Giovannoni, Yunjiang Cheng, Saleh Alseekh, Alisdair Robert Fernie
A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator. Plant physiology 190 (1) (2022)
Penghui Li, Enhua Xia, Jiamin Fu, Yujie Xu, Xuecheng Zhao, Wei Tong, Qian Tang, Million Tadege, Alisdair Robert Fernie, Jian Zhao
Diverse roles of MYB transcription factors in regulating secondary metabolite biosynthesis, shoot development, and stress responses in tea plants (Camellia sinensis). The Plant journal : for cell and molecular biology 110 (4) (2022)
Songtao Gui, Félix Juan Martínez Rivas, Weiwei Wen, Minghui Meng, Jianbing Yan, Björn Usadel, Alisdair Robert Fernie
Going broad and deep: sequencing-driven insights into plant physiology, evolution, and crop domestication. The Plant journal : for cell and molecular biology (2022)
Lu Chen, Jingyun Luo, Minliang Jin, Ning Yang, Xiangguo Liu, Yong Peng, Wenqiang Li, Alyssa Phillips, Brenda Cameron, Julio S Bernal, Rubén Rellán Álvarez, Ruairidh J H Sawers, Qing Liu, Yuejia Yin, Xinnan Ye, Jiali Yan, Qinghua Zhang, Xiaoting Zhang, Shenshen Wu, Songtao Gui, Wenjie Wei, Yuebin Wang, Yun Luo, Chenglin Jiang, Min Deng, Min Jin, Liumei Jian, Yanhui Yu, Maolin Zhang, Xiaohong Yang, Matthew B Hufford, Alisdair Robert Fernie, Marilyn L Warburton, Jeffrey Ross-Ibarra, Jianbing Yan
Genome sequencing reveals evidence of adaptive variation in the genus Zea. Nature genetics 54 (11) (2022)
Dennis Schlossarek, Youjun Zhang, Ewelina M Sokolowska, Alisdair Robert Fernie, Marcin Luzarowski, Aleksandra Skirycz
Don't let go: co-fractionation mass spectrometry for untargeted mapping of protein-metabolite interactomes. The Plant journal : for cell and molecular biology (2022)
Songtong Gui, Félix Juan Martínez Rivas, Weiwei Wen, Minghui Meng, Jianbing Yan, Björn Usadel, Alisdair Robert Fernie
Going broad and deep: sequencing driven insights into plant physiology, evolution and crop domestication. The Plant journal : for cell and molecular biology (2022)
Yang Gao, Wolfram Thiele, Omar Saleh, Federico Scossa, Fayezeh Arabi, Hongmou Zhang, Arun Sampathkumar, Kristina Kühn, Alisdair Robert Fernie, Ralph Bock, Mark Aurel Schöttler, Reimo Zoschke
Chloroplast translational regulation uncovers nonessential photosynthesis genes as key players in plant cold acclimation. The Plant cell 34 (5) (2022)
Willian Batista-Silva, Alice Carvalho de Oliveira, Auxiliadora Oliveira Martins, João Antonio Siqueira, Acácio Rodrigues-Salvador, Rebeca P Omena-Garcia, David Barbosa Medeiros, Lázaro Eustáquio Pereira Peres, Dimas Mendes Ribeiro, Agustin Zsögön, Alisdair Robert Fernie, Adriano N Nesi, Wagner L Araújo
Reduced auxin signalling through the cyclophilin gene DIAGEOTROPICA impacts tomato fruit development and metabolism during ripening. Journal of experimental botany 73 (12) (2022)
Elias Feitosa-Araujo, Paula da Fonseca-Pereira, Mateus Miranda Pena, Jaciara Lana-Costa, Daniel Gomes Coelho, Franklin Magnum de Oliveira Silva, David Barbosa Medeiros, Nicole Linka, Wagner L Araújo, Andreas P M Weber, Alisdair Robert Fernie, Adriano N Nesi
Mitochondrial and peroxisomal NAD + uptake are important for improved photosynthesis and seed yield under elevated CO 2 concentrations. The Plant journal : for cell and molecular biology 111 (3) (2022)
Gian Luca Borghi, Stéphanie Arrivault, Manuela Guenther, David Barbosa Medeiros, Emilia Dell'Aversana, Giovanna Marta Fusco, Petronia Carillo, Martha Ludwig, Alisdair Robert Fernie, John E Lunn, Mark Stitt
Metabolic profiles in C3, C3-C4 intermediate, C4-like, and C4 species in the genus Flaveria. Journal of experimental botany 73 (5) (2022)
Mustafa Bulut, Saleh Alseekh, Alisdair Robert Fernie
Natural variation of respiration-related traits in plants. Plant physiology (2022)
Monica Borghi, Leonardo Perez de Souza, Alisdair Robert Fernie
Measurement of Flower Metabolite Concentrations Using Gas Chromatography-Mass Spectrometry and High-Performance Liquid Chromatography-Mass Spectrometry. Methods in molecular biology (Clifton, N.J.) 2484 (2022)
Manuel Balparda, Jessica Schmitz, Martin Duemmel, Isabell C Wuthenow, Marc Schmidt, Saleh Alseekh, Alisdair Robert Fernie, Martin J Lercher, Verónica G Maurino
Two plant glyoxalase systems with different evolutionary origins detoxify diverse reactive carbonyl species. Plant physiology (2022)
Monica Borghi, Leonardo Perez de Souza, Takayuki Tohge, Jianing Mi, Giovanni Melandri, Sebastian Proost, Marina C M Martins, Salim Al-Babili, Harro J Bouwmeester, Alisdair Robert Fernie
High-energy-level metabolism and transport occur at the transition from closed to open flowers. Plant physiology 190 (1) (2022)
Penghui Li, Zhili Ye, Jiamin Fu, Yujie Xu, Yihua Shen, Yanrui Zhang, Dingkun Tang, Ping Li, Hao Zuo, Wei Tong, Shucai Wang, Alisdair Robert Fernie, Jian Zhao
CsMYB184 regulates caffeine biosynthesis in tea plants. Plant biotechnology journal 20 (6) (2022)
Adrian F Powell, Ari Feder, Jie Li, Maximilian H-W Schmidt, Lance Courtney, Saleh Alseekh, Emma M Jobson, Alexander Vogel, Yimin Xu, David Lyon, Kathryn Dumschott, Marcus McHale, Ronan Sulpice, Kan Bao, Rohit Lal, Asha Duhan, Asis Hallab, Alisandra K Denton, Marie E Bolger, Alisdair Robert Fernie, Sarah R Hind, Lukas A Mueller, Gregory B Martin, Zhangjun Fei, Cathie Martin, James J Giovannoni, Susan R Strickler, Björn Usadel
A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity. The Plant journal : for cell and molecular biology 110 (6) (2022)
Aleksandra Skirycz, Alisdair Robert Fernie
Past accomplishments and future challenges of the multi-omics characterization of leaf growth. Plant physiology 189 (2) (2022)
Hirofumi Ishihara, Saleh Alseekh, Regina Feil, Pumi Perera, Gavin M George, Piotr Niedźwiecki, Stephanie Arrivault, Samuel C Zeeman, Alisdair Robert Fernie, John E Lunn, Alison M Smith, Mark Stitt
Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability. Plant physiology 189 (4) (2022)
Sandra E Zimmermann, Ruben M Benstein, María Flores-Tornero, Samira Blau, Armand Djoro Anoman, Sara Rosa-Téllez, Silke C Gerlich, Mohamed A Salem, Saleh Alseekh, Stanislav Kopriva, Vera Wewer, Ulf-Ingo Flügge, Richard P Jacoby, Alisdair Robert Fernie, Patrick Giavalisco, Roc Ros, Stephan Krueger
The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism. Plant physiology 186 (3) (2022)
Wenkang Chen, Lu Chen, Xuan Zhang, Ning Yang, Jianghua Guo, Min Wang, Shenghui Ji, Xiangyu Zhao, Pengfei Yin, Lichun Cai, Jing Xu, Lili Zhang, Yingjia Han, Yingni Xiao, Gen Xu, Yuebin Wang, Shuhui Wang, Sheng Wu, Fang Yang, David P Jackson, Jinkui Cheng, Saihua Chen, Chuanqing Sun, Feng Qin, Feng Tian, Alisdair Robert Fernie, Jiansheng Li, Jianbing Yan, Xiaohong Yang
Convergent selection of a WD40 protein that enhances grain yield in maize and rice. Science (New York, N.Y.) 375 (6587) (2022)
Yuebin Wang, Wenqiang Li, Luxi Wang, Jiali Yan, Gang Lu, Ning Yang, Jieting Xu, Yuqing Wang, Songtao Gui, Gengshen Chen, Shuyan Li, Chengxiu Wu, Tingting Guo, Yingjie Xiao, Marilyn L Warburton, Alisdair Robert Fernie, Thomas Dresselhaus, Jianbing Yan
Three types of genes underlying the Gametophyte factor1 locus cause unilateral cross incompatibility in maize. Nature communications 13 (1) (2022)
Ryo Yokoyama, Marcos V V de Oliveira, Yuri Takeda, Hirofumi Ishihara, Saleh Alseekh, Stéphanie Arrivault, Vandna Kukshal, Joseph M Jez, Mark Stitt, Alisdair Robert Fernie, Hiroshi A Maeda
Point mutations that boost aromatic amino acid production and CO 2 assimilation in plants. Science advances 8 (23) (2022)

Alisdair Robert Fernie.css-eqlu8i{font-size:small;padding-left:4px;} (Alisdair R Fernie, Alisdair Fernie)

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Alisdair Robert Fernie (Alisdair R Fernie, Alisdair Fernie)