Björn Usadel

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 44

Top Topics

Convolutional Neural Network

Machine Learning

Genome Wide Association

Top Venues

The Plant journal : for cell and molecular biology

Plant physiology

This page only lists publications with an associated author ORCID identifier.

Publications

Arslan Tariq, Minghui Meng, Xiaohui Jiang, Anthony Bolger, Sebastian Beier, Jan P Buchmann, Alisdair Robert Fernie, Weiwei Wen, Björn Usadel
In-depth exploration of the genomic diversity in tea varieties based on a newly constructed pangenome of Camellia sinensis. The Plant journal : for cell and molecular biology (2024)
Rebecca Serra Mari, Sven Schrinner, Richard Finkers, Freya Maria Rosemarie Ziegler, Paul Arens, Maximilian H-W Schmidt, Björn Usadel, Gunnar W Klau, Tobias Marschall
Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data. Genome biology 25 (1) (2024)
Rebecca Serra Mari, Sven Schrinner, Richard Finkers, Freya Maria Rosemarie Ziegler, Paul Arens, Maximilian H-W Schmidt, Björn Usadel, Gunnar W Klau, Tobias Marschall
Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data. Genome biology 25 (1) (2024)
Rebecca Serra Mari, Sven Schrinner, Richard Finkers, Freya Maria Rosemarie Ziegler, Paul Arens, Maximilian H-W Schmidt, Björn Usadel, Gunnar W Klau, Tobias Marschall
Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data. Genome biology 25 (1) (2024)
Rebecca Serra Mari, Sven Schrinner, Richard Finkers, Freya Maria Rosemarie Ziegler, Paul Arens, Maximilian H-W Schmidt, Björn Usadel, Gunnar W Klau, Tobias Marschall
Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data. Genome biology 25 (1) (2024)
Arslan Tariq, Minghui Meng, Xiaohui Jiang, Anthony Bolger, Sebastian Beier, Jan P Buchmann, Alisdair Robert Fernie, Weiwei Wen, Björn Usadel
In-depth exploration of the genomic diversity in tea varieties based on a newly constructed pangenome of Camellia sinensis. The Plant journal : for cell and molecular biology 119 (4) (2024)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature (2023)
Rhowell Jr N Tiozon, Nese Sreenivasulu, Saleh Alseekh, Kristel June D Sartagoda, Björn Usadel, Alisdair Robert Fernie
Metabolomics and machine learning technique revealed that germination enhances the multi-nutritional properties of pigmented rice. Communications biology 6 (1) (2023)
Heinrich Lukas Weil, Kevin Schneider, Marcel Tschöpe, Jonathan Bauer, Oliver Maus, Kevin Frey, Dominik Brilhaus, Cristina Martins Rodrigues, Gajendra Doniparthi, Florian Wetzels, Jonas Lukasczyk, Angela Kranz, Bjoern Andreas Gruening, David Zimmer, Stefan Deßloch, Dirk von Suchodoletz, Björn Usadel, Christoph Garth, Timo Mühlhaus
PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research. The Plant journal : for cell and molecular biology (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature 615 (7953) (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature 615 (7953) (2023)
Songtao Gui, Félix Juan Martínez Rivas, Weiwei Wen, Minghui Meng, Jianbing Yan, Björn Usadel, Alisdair Robert Fernie
Going broad and deep: sequencing-driven insights into plant physiology, evolution, and crop domestication. The Plant journal : for cell and molecular biology 113 (3) (2023)
Songtao Gui, Félix Juan Martínez Rivas, Weiwei Wen, Minghui Meng, Jianbing Yan, Björn Usadel, Alisdair Robert Fernie
Going broad and deep: sequencing-driven insights into plant physiology, evolution, and crop domestication. The Plant journal : for cell and molecular biology 113 (3) (2023)
Songtao Gui, Félix Juan Martínez Rivas, Weiwei Wen, Minghui Meng, Jianbing Yan, Björn Usadel, Alisdair Robert Fernie
Going broad and deep: sequencing-driven insights into plant physiology, evolution, and crop domestication. The Plant journal : for cell and molecular biology 113 (3) (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature 615 (7953) (2023)
Haiji Qiu, Xiaoliang Zhang, Youjun Zhang, Xiaohui Jiang, Yujia Ren, Dawei Gao, Xiang Zhu, Björn Usadel, Alisdair Robert Fernie, Weiwei Wen
Depicting the genetic and metabolic panorama of chemical diversity in the tea plant. Plant biotechnology journal (2023)
Björn Usadel
Solanaceae pangenomes are coming of graphical age to bring heritability back. aBIOTECH 3 (4) (2022)
Björn Usadel
Solanaceae pangenomes are coming of graphical age to bring heritability back. aBIOTECH 3 (4) (2022)
Björn Usadel
Solanaceae pangenomes are coming of graphical age to bring heritability back. aBIOTECH 3 (4) (2022)
Willem M J van Rengs, Maximilian H-W Schmidt, Sieglinde Effgen, Duyen Bao Le, Yazhong Wang, Mohd Waznul Adly Mohd Zaidan, Bruno Huettel, Henk J Schouten, Björn Usadel, Charles J Underwood
A chromosome scale tomato genome built from complementary PacBio and Nanopore sequences alone reveals extensive linkage drag during breeding. The Plant journal : for cell and molecular biology 110 (2) (2022)
Elisa Senger, Sonia Osorio, Klaus Olbricht, Paul Shaw, Béatrice Denoyes, Jahn Davik, Stefano Predieri, Saila Karhu, Sebastian Raubach, Nico Lippi, Monika Höfer, Helen Maria Cockerton, Christophe Pradal, Ebru Kafkas, Suzanne Litthauer, Iraida Amaya, Björn Usadel, Mezzetti Bruno
Towards smart and sustainable development of modern berry cultivars in Europe. The Plant journal : for cell and molecular biology 111 (5) (2022)
Julia Jessica Reimer, Basel Shaaban, Noud Drummen, Sruthy Sanjeev Ambady, Franziska Genzel, Gernot Poschet, Anika Wiese-Klinkenberg, Björn Usadel, Alexandra Wormit
Capsicum Leaves under Stress: Using Multi-Omics Analysis to Detect Abiotic Stress Network of Secondary Metabolism in Two Species. Antioxidants (Basel, Switzerland) 11 (4) (2022)
Songtao Gui, Félix Juan Martínez Rivas, Weiwei Wen, Minghui Meng, Jianbing Yan, Björn Usadel, Alisdair Robert Fernie
Going broad and deep: sequencing-driven insights into plant physiology, evolution, and crop domestication. The Plant journal : for cell and molecular biology (2022)
Songtong Gui, Félix Juan Martínez Rivas, Weiwei Wen, Minghui Meng, Jianbing Yan, Björn Usadel, Alisdair Robert Fernie
Going broad and deep: sequencing driven insights into plant physiology, evolution and crop domestication. The Plant journal : for cell and molecular biology (2022)
Ali Hadizadeh Esfahani, Janina Maß, Asis Hallab, Bernhard M Schuldt, David Nevarez, Björn Usadel, Mark-Christoph Ott, Benjamin Buer, Andreas Schuppert
Plant PhysioSpace: a robust tool to compare stress response across plant species. Plant physiology 187 (3) (2022)
Björn Usadel
Solanaceae pangenomes are coming of graphical age to bring heritability back. aBIOTECH 3 (4) (2022)
Björn Usadel
Solanaceae pangenomes are coming of graphical age to bring heritability back. aBIOTECH 3 (4) (2022)
Adrian F Powell, Ari Feder, Jie Li, Maximilian H-W Schmidt, Lance Courtney, Saleh Alseekh, Emma M Jobson, Alexander Vogel, Yimin Xu, David Lyon, Kathryn Dumschott, Marcus McHale, Ronan Sulpice, Kan Bao, Rohit Lal, Asha Duhan, Asis Hallab, Alisandra K Denton, Marie E Bolger, Alisdair Robert Fernie, Sarah R Hind, Lukas A Mueller, Gregory B Martin, Zhangjun Fei, Cathie Martin, James J Giovannoni, Susan R Strickler, Björn Usadel
A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity. The Plant journal : for cell and molecular biology 110 (6) (2022)
Björn Usadel
Solanaceae pangenomes are coming of graphical age to bring heritability back. aBIOTECH 3 (4) (2022)
Julia Jessica Reimer, Björn Thiele, Robin T Biermann, Laura V Junker-Frohn, Anika Wiese-Klinkenberg, Björn Usadel, Alexandra Wormit
Tomato leaves under stress: a comparison of stress response to mild abiotic stress between a cultivated and a wild tomato species. Plant molecular biology 107 (3) (2021)
Evangelia A Papoutsoglou, Daniel Faria, Daniel Arend, Elizabeth Arnaud, Ioannis N Athanasiadis, Inês Chaves, Frederik Coppens, Guillaume Cornut, Bruno V Costa, Hanna Ćwiek-Kupczyńska, Bert Droesbeke, Richard Finkers, Kristina Gruden, Astrid Junker, Graham John King, Paweł Krajewski, Matthias Lange, Marie-Angélique Laporte, Célia Michotey, Markus Oppermann, Richard Ostler, Hendrik Poorter, Ricardo Humberto Ramirez-Gonzalez, Živa Ramšak, Jochen Christoph Reif, Philippe Rocca-Serra, Susanna-Assunta Sansone, Uwe Scholz, François Tardieu, Cristobal Uauy, Björn Usadel, Richard G F Visser, Stephan Weise, Paul Julian Kersey, Célia Maria Miguel, Anne-Françoise Adam-Blondon, Cyril Pommier
Enabling reusability of plant phenomic datasets with MIAPPE 1.1. The New phytologist 227 (1) (2020)
Weiyi Zhang, Youjun Zhang, Haiji Qiu, Yafei Guo, Haoliang Wan, Xiaoliang Zhang, Federico Scossa, Saleh Alseekh, Qinghua Zhang, Pu Wang, Li Xu, Maximilian H-W Schmidt, Xinxin Jia, Daili Li, Anting Zhu, Fei Guo, Wei Chen, Dejiang Ni, Björn Usadel, Alisdair Robert Fernie, Weiwei Wen
Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties. Nature communications 11 (1) (2020)
Bo Yang, Florian Hofmann, Björn Usadel, Cătălin Voiniciuc
Seed hemicelluloses tailor mucilage properties and salt tolerance. The New phytologist 229 (4) (2020)
Jan Borlinghaus, Anthony Bolger, Christina Schier, Alexander Vogel, Björn Usadel, Martin Ch Gruhlke, Alan J Slusarenko
Genetic and molecular characterization of multicomponent resistance of Pseudomonas against allicin. Life science alliance 3 (5) (2020)
Shaowei Dong, Vincent Lau, Richard Song, Matthew Ierullo, Eddi Esteban, Yingzhou Wu, Teeratham Sivieng, Hardeep Nahal, Allison Gaudinier, Asher Pasha, Rose Oughtred, Kara J Dolinski, Mike Tyers, Siobhán M Brady, Ruth Grene, Björn Usadel, Nicholas J Provart
Proteome-wide, Structure-Based Prediction of Protein-Protein Interactions/New Molecular Interactions Viewer. Plant physiology 179 (4) (2019)
Stephani Baum, Eva-Maria Reimer-Michalski, Anthony Bolger, Andrea J Sistenich, Vladimir Benes, Björn Usadel, Uwe Conrath
Isolation of Open Chromatin Identifies Regulators of Systemic Acquired Resistance. Plant physiology 181 (2) (2019)
Kaitlyn J Courville, Lamprinos Frantzeskakis, Summia Gul, Natalie Haeger, Ronny Kellner, Natascha Heßler, Brad Day, Björn Usadel, Yogesh Kumar Gupta, H Peter van Esse, Andreas Brachmann, Eric M Kemen, Michael Feldbrügge, Vera Göhre
Smut infection of perennial hosts: the genome and the transcriptome of the Brassicaceae smut fungus Thecaphora thlaspeos reveal functionally conserved and novel effectors. The New phytologist 222 (3) (2019)
Isma Belouah, Christine Nazaret, Pierre Petriacq, Sylvain Prigent, Camille Bénard, Virginie Mengin, Mélisande Blein-Nicolas, Alisandra K Denton, Thierry Balliau, Ségolène Augé, Olivier Bouchez, Jean-Pierre Mazat, Mark Stitt, Björn Usadel, Michel Zivy, Bertrand Beauvoit, Yves Gibon, Sophie Colombié
Modeling Protein Destiny in Developing Fruit. Plant physiology 180 (3) (2019)
Alexander Vogel, Rainer Schwacke, Alisandra K Denton, Björn Usadel, Julien-Alexander Bruckmüller, Karsten Fischer, Anthony Bolger, Maximilian H-W Schmidt, Marie E Bolger, Heidrun Gundlach, Klaus F X Mayer, Hanna Weiss-Schneeweiss, Eva M Temsch, Kirsten Krause
Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris. Nature communications 9 (1) (2018)
Bo Yang, Cătălin Voiniciuc, Lanbao Fu, Sabine Dieluweit, Holger Klose, Björn Usadel
TRM4 is essential for cellulose deposition in Arabidopsis seed mucilage by maintaining cortical microtubule organization and interacting with CESA3. The New phytologist 221 (2) (2018)
Cătălin Voiniciuc, Markus Pauly, Björn Usadel
Monitoring Polysaccharide Dynamics in the Plant Cell Wall. Plant physiology 176 (4) (2018)
Cătălin Voiniciuc, Kristen A Engle, Markus Günl, Sabine Dieluweit, Maximilian Heinrich-Wilhelm Schmidt, Jeong Yeh Yang, Kelley W Moremen, Debra Mohnen, Björn Usadel
Identification of Key Enzymes for Pectin Synthesis in Seed Mucilage. Plant physiology 178 (3) (2018)
Maximilian H-W Schmidt, Alexander Vogel, Alisandra K Denton, Benjamin Istace, Alexandra Wormit, Henri van de Geest, Marie E Bolger, Saleh Alseekh, Janina Maß, Christian Pfaff, Ulrich Schurr, Roger T Chetelat, Florian Maumus, Jean-Marc Aury, Sergey Koren, Alisdair R Fernie, Dani Zamir, Anthony M Bolger, Björn Usadel
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing. The Plant cell 29 (10) (2017)