Naoki Sugimoto

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 45

Top Topics

Dna Methylation

Top Venues

Chemical communications (Cambridge, England)

Journal of the American Chemical Society

Analytical chemistry

Molecules (Basel, Switzerland)

This page only lists publications with an associated author ORCID identifier.

Publications

Hisae Tateishi-Karimata, Keiko Kawauchi, Shuntaro Takahashi, Naoki Sugimoto
Development of a Pseudocellular System to Quantify Specific Interactions Determining the G-Quadruplex Function in Cells. Journal of the American Chemical Society (2024)
Hisae Tateishi-Karimata, Keiko Kawauchi, Shuntaro Takahashi, Naoki Sugimoto
Development of a Pseudocellular System to Quantify Specific Interactions Determining the G-Quadruplex Function in Cells. Journal of the American Chemical Society 146 (12) (2024)
Hisae Tateishi-Karimata, Keiko Kawauchi, Shuntaro Takahashi, Naoki Sugimoto
Development of a Pseudocellular System to Quantify Specific Interactions Determining the G-Quadruplex Function in Cells. Journal of the American Chemical Society 146 (12) (2024)
Hisae Tateishi-Karimata, Naoki Sugimoto
Choline Dihydrogen Phosphate Destabilizes G-Quadruplexes and Enhances Transcription Efficiency In Vitro and in Cells. ACS omega 9 (5) (2024)
Hisae Tateishi-Karimata, Keiko Kawauchi, Shuntaro Takahashi, Naoki Sugimoto
Development of a Pseudocellular System to Quantify Specific Interactions Determining the G-Quadruplex Function in Cells. Journal of the American Chemical Society 146 (12) (2024)
Dipanwita Banerjee, Hisae Tateishi-Karimata, Maria Toplishek, Tatsuya Ohyama, Saptarshi Ghosh, Shuntaro Takahashi, Marko Trajkovski, Janez Plavec, Naoki Sugimoto
In-Cell Stability Prediction of RNA/DNA Hybrid Duplexes for Designing Oligonucleotides Aimed at Therapeutics. Journal of the American Chemical Society (2023)
Tamaki Endoh, Shuntaro Takahashi, Naoki Sugimoto
Endogenous G-quadruplex-forming RNAs inhibit the activity of SARS-CoV-2 RNA polymerase. Chemical communications (Cambridge, England) (2023)
Yoshiki Hashimoto, Yoshiki Imagawa, Kaho Nagano, Ryuichi Maeda, Naho Nagahama, Takeru Torii, Natsuki Kinoshita, Nagisa Takamiya, Keiko Kawauchi, Hisae Tatesishi-Karimata, Naoki Sugimoto, Daisuke Miyoshi
Simple and fast screening for structure-selective G-quadruplex ligands. Chemical communications (Cambridge, England) (2023)
Saptarshi Ghosh, Shuntaro Takahashi, Dipanwita Banerjee, Tatsuya Ohyama, Tamaki Endoh, Hisae Tateishi-Karimata, Naoki Sugimoto
Nearest-neighbor parameters for the prediction of RNA duplex stability in diverse in vitro and cellular-like crowding conditions. Nucleic acids research (2023)
Tamaki Endoh, Shuntaro Takahashi, Naoki Sugimoto
Endogenous G-quadruplex-forming RNAs inhibit the activity of SARS-CoV-2 RNA polymerase. Chemical communications (Cambridge, England) 59 (7) (2023)
Tamaki Endoh, Shuntaro Takahashi, Naoki Sugimoto
Endogenous G-quadruplex-forming RNAs inhibit the activity of SARS-CoV-2 RNA polymerase. Chemical communications (Cambridge, England) 59 (7) (2023)
Tamaki Endoh, Shuntaro Takahashi, Naoki Sugimoto
Endogenous G-quadruplex-forming RNAs inhibit the activity of SARS-CoV-2 RNA polymerase. Chemical communications (Cambridge, England) 59 (7) (2023)
Tamaki Endoh, Jia-Heng Tan, Shuo-Bin Chen, Naoki Sugimoto
Cladogenetic Orthogonal Light-Up Aptamers for Simultaneous Detection of Multiple Small Molecules in Cells. Analytical chemistry 95 (2) (2022)
Tamaki Endoh, Jia-Heng Tan, Shuo-Bin Chen, Naoki Sugimoto
Cladogenetic Orthogonal Light-Up Aptamers for Simultaneous Detection of Multiple Small Molecules in Cells. Analytical chemistry 95 (2) (2022)
Mitsuki Tsuruta, Takeru Torii, Kazuki Kohata, Keiko Kawauchi, Hisae Tateishi-Karimata, Naoki Sugimoto, Daisuke Miyoshi
Controlling liquid-liquid phase separation of G-quadruplex-forming RNAs in a sequence-specific manner. Chemical communications (Cambridge, England) 58 (93) (2022)
Tamaki Endoh, Jia-Heng Tan, Shuo-Bin Chen, Naoki Sugimoto
Cladogenetic Orthogonal Light-Up Aptamers for Simultaneous Detection of Multiple Small Molecules in Cells. Analytical chemistry 95 (2) (2022)
Sagar Satpathi, Tamaki Endoh, Naoki Sugimoto
Applicability of the nearest-neighbour model for pseudoknot RNAs. Chemical communications (Cambridge, England) 58 (40) (2022)
Saki Matsumoto, Naoki Sugimoto, Naoki Sugimoto
DNA methylation is regulated by both the stability and topology of G-quadruplex. Chemical communications (Cambridge, England) 58 (89) (2022)
Tamaki Endoh, Jia-Heng Tan, Shuo-Bin Chen, Naoki Sugimoto
Cladogenetic Orthogonal Light-Up Aptamers for Simultaneous Detection of Multiple Small Molecules in Cells. Analytical chemistry (2022)
Shuntaro Takahashi, Sudipta Bhowmik, Shinobu Sato, Shigeori Takenaka, Naoki Sugimoto
Replication Control of Human Telomere G-Quadruplex DNA by G-Quadruplex Ligands Dependent on Solution Environment. Life (Basel, Switzerland) 12 (4) (2022)
Naoki Sugimoto, Naoki Sugimoto
Roles of non-canonical structures of nucleic acids in cancer and neurodegenerative diseases. Nucleic acids research 49 (14) (2021)
Saki Matsumoto, Naoki Sugimoto, Tatsuya Ohyama, Naoki Sugimoto
Effect of DNA modifications on the transition between canonical and non-canonical DNA structures in CpG islands during senescence. RSC advances 11 (59) (2021)
Sushil Lathwal, Saigopalakrishna S Yerneni, Susanne Boye, Upenyu L Muza, Shuntaro Takahashi, Naoki Sugimoto, Albena Lederer, Subha R Das, Phil G Campbell, Krzysztof Matyjaszewski
Engineering exosome polymer hybrids by atom transfer radical polymerization. Proceedings of the National Academy of Sciences of the United States of America 118 (2) (2021)
Saki Matsumoto, Naoki Sugimoto
New Insights into the Functions of Nucleic Acids Controlled by Cellular Microenvironments. Topics in current chemistry (Cham) 379 (3) (2021)
Wataru Sugimoto, Natsuki Kinoshita, Minori Nakata, Tatsuya Ohyama, Naoki Sugimoto, Takahito Nishikata, Naoki Sugimoto, Daisuke Miyoshi, Keiko Kawauchi
Intramolecular G-quadruplex-hairpin loop structure competition of a GC-rich exon region in the TMPRSS2 gene. Chemical communications (Cambridge, England) (2021)
Mitsuki Tsuruta, Yui Sugitani, Naoki Sugimoto, Daisuke Miyoshi
Combined Effects of Methylated Cytosine and Molecular Crowding on the Thermodynamic Stability of DNA Duplexes. International journal of molecular sciences 22 (2) (2021)
Ye Teng, Hisae Tateishi-Karimata, Naoki Sugimoto
RNA G-Quadruplexes Facilitate RNA Accumulation in G-Rich Repeat Expansions. Biochemistry 59 (21) (2020)
Naoki Sugimoto, Tatsuya Ohyama, Takahiro Muraoka, Shigenori Tanaka, Kazushi Kinbara, Naoki Sugimoto
New Modified Deoxythymine with Dibranched Tetraethylene Glycol Stabilizes G-Quadruplex Structures. Molecules (Basel, Switzerland) 25 (3) (2020)
Shuntaro Takahashi, Hiromichi Okura, Pallavi Chilka, Saptarshi Ghosh, Naoki Sugimoto
Molecular crowding induces primer extension by RNA polymerase through base stacking beyond Watson-Crick rules. RSC advances 10 (55) (2020)
Yuka Kataoka, Hiroto Fujita, Tamaki Endoh, Naoki Sugimoto, Masayasu Kuwahara
Effects of Modifying Thioflavin T at the N3-Position on Its G4 Binding and Fluorescence Emission. Molecules (Basel, Switzerland) 25 (21) (2020)
Shuntaro Takahashi, Piet Herdwijn, Naoki Sugimoto
Effect of Molecular Crowding on DNA Polymerase Reactions along Unnatural DNA Templates. Molecules (Basel, Switzerland) 25 (18) (2020)
Tamaki Endoh, Naoki Sugimoto
Signaling Aptamer Optimization through Selection Using RNA-Capturing Microsphere Particles. Analytical chemistry 92 (11) (2020)
Ye Teng, Hisae Tateishi-Karimata, Tatsuya Ohyama, Naoki Sugimoto
Effect of Potassium Concentration on Triplex Stability under Molecular Crowding Conditions. Molecules (Basel, Switzerland) 25 (2) (2020)
Tamaki Endoh, Naoki Sugimoto
Conformational Dynamics of the RNA G-Quadruplex and its Effect on Translation Efficiency. Molecules (Basel, Switzerland) 24 (8) (2019)
Shu-Ichi Nakano, Toshiya Ayusawa, Yuichi Tanino, Naoki Sugimoto
Stabilization of DNA Loop Structures by Large Cations. The journal of physical chemistry. B 123 (36) (2019)
Shuntaro Takahashi, Johtaro Yamamoto, Akira Kitamura, Masataka Kinjo, Naoki Sugimoto
Characterization of Intracellular Crowding Environments with Topology-Based DNA Quadruplex Sensors. Analytical chemistry 91 (4) (2019)
Tamaki Endoh, Tatsuya Ohyama, Naoki Sugimoto
RNA-Capturing Microsphere Particles (R-CAMPs) for Optimization of Functional Aptamers. Small (Weinheim an der Bergstrasse, Germany) 15 (26) (2019)
Shuntaro Takahashi, Hiromichi Okura, Naoki Sugimoto
Bisubstrate Function of RNA Polymerases Triggered by Molecular Crowding Conditions. Biochemistry 58 (8) (2019)
Masayasu Kuwahara, Hiroto Fujita, Yuka Kataoka, Yasuyo Nakajima, Masanobu Yamada, Naoki Sugimoto
In situ condensation of an anti-cancer drug into fibrin gel enabling effective inhibition of tumor cell growth. Chemical communications (Cambridge, England) 55 (78) (2019)
Shuntaro Takahashi, Boris Chelobanov, Ki Tae Kim, Byeang Hyean Kim, Dmitry Stetsenko, Naoki Sugimoto
Design and Properties of Ligand-Conjugated Guanine Oligonucleotides for Recovery of Mutated G-Quadruplexes. Molecules (Basel, Switzerland) 23 (12) (2018)
Ambadas B Rode, Tamaki Endoh, Naoki Sugimoto
Crowding Shifts the FMN Recognition Mechanism of Riboswitch Aptamer from Conformational Selection to Induced Fit. Angewandte Chemie (International ed. in English) 57 (23) (2018)
Hisae Tateishi-Karimata, Keiko Kawauchi, Naoki Sugimoto
Destabilization of DNA G-Quadruplexes by Chemical Environment Changes during Tumor Progression Facilitates Transcription. Journal of the American Chemical Society 140 (2) (2018)
Tamaki Endoh, Naoki Sugimoto
Co-Transcriptional Molecular Assembly Results in a Kinetically Controlled Irreversible RNA Conformational Switch. Analytical chemistry 90 (19) (2018)
Shuntaro Takahashi, Ki Tae Kim, Peter Podbevšek, Janez Plavec, Byeang Hyean Kim, Naoki Sugimoto
Recovery of the Formation and Function of Oxidized G-Quadruplexes by a Pyrene-Modified Guanine Tract. Journal of the American Chemical Society 140 (17) (2018)
Jun Zhou, Samir Amrane, Frédéric Rosu, Gilmar F Salgado, Yunqiang Bian, Hisae Tateishi-Karimata, Eric Largy, Dursun Nizam Korkut, Anne Bourdoncle, Daisuke Miyoshi, Jian Zhang, Huangxian Ju, Wei Wang, Naoki Sugimoto, Valerie Gabelica, Jean-Louis Mergny
Unexpected Position-Dependent Effects of Ribose G-Quartets in G-Quadruplexes. Journal of the American Chemical Society 139 (23) (2017)