Ophelia S Venturelli (Ophelia Venturelli)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 53

Top Venues

Nature communications

Molecular systems biology

bioRxiv : the preprint server for biology

Nature methods

University of Wisconsin-Madison

California Institute of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Wisconsin-Madison Jul 11 2016

United States

Assistant Professor :: Biochemistry

Education History

California Institute of Technology Sep 01 2007 - Jun 01 2013

United States

PHD :: Biochemistry and Biophysics

Publications

Zachary P Harmer, Jaron C Thompson, David L Cole, Ophelia S Venturelli, Victor M Zavala, Megan N McClean
Dynamic Multiplexed Control and Modeling of Optogenetic Systems Using the High-Throughput Optogenetic Platform, Lustro. ACS synthetic biology 13 (5) (2024)
Jordy Evan Sulaiman, Jaron Thompson, Pak Lun Kevin Cheung, Yili Qian, Jericha Mill, Isabella James, Eugenio I Vivas, Judith A Simcox, Ophelia S Venturelli
Human gut microbiota interactions shape the long-term growth dynamics and evolutionary adaptations of Clostridioides difficile . bioRxiv : the preprint server for biology (2024)
Jordy Evan Sulaiman, Jaron Thompson, Yili Qian, Eugenio I Vivas, Christian Diener, Sean M Gibbons, Nasia Safdar, Ophelia S Venturelli
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. Nature communications 15 (1) (2024)
Nick Quinn-Bohmann, Tomasz Wilmanski, Katherine Ramos Sarmiento, Lisa Levy, Johanna W Lampe, Thomas Gurry, Noa Rappaport, Erin M Ostrem, Ophelia S Venturelli, Christian Diener, Sean M Gibbons
Microbial community-scale metabolic modelling predicts personalized short-chain fatty acid production profiles in the human gut. Nature microbiology 9 (7) (2024)
Jordy Evan Sulaiman, Jaron Thompson, Yili Qian, Eugenio I Vivas, Christian Diener, Sean M Gibbons, Nasia Safdar, Ophelia S Venturelli
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. bioRxiv : the preprint server for biology (2024)
Zachary P Harmer, Jaron C Thompson, David L Cole, Ophelia S Venturelli, Victor M Zavala, Megan N McClean
Dynamic Multiplexed Control and Modeling of Optogenetic Systems Using the High-Throughput Optogenetic Platform, Lustro. ACS synthetic biology 13 (5) (2024)
Jordy Evan Sulaiman, Jaron Thompson, Yili Qian, Eugenio I Vivas, Christian Diener, Sean M Gibbons, Nasia Safdar, Ophelia S Venturelli
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. Nature communications 15 (1) (2024)
Freeman Lan, Jason Saba, Tyler D Ross, Zhichao Zhou, Katie Krauska, Karthik Anantharaman, Robert Landick, Ophelia S Venturelli
Massively parallel single-cell sequencing of diverse microbial populations. Nature methods 21 (2) (2024)
Jordy Evan Sulaiman, Jaron Thompson, Yili Qian, Eugenio I Vivas, Christian Diener, Sean M Gibbons, Nasia Safdar, Ophelia S Venturelli
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. Nature communications 15 (1) (2024)
Nick Quinn-Bohmann, Tomasz Wilmanski, Katherine Ramos Sarmiento, Lisa Levy, Johanna W Lampe, Thomas Gurry, Noa Rappaport, Erin M Ostrem, Ophelia S Venturelli, Christian Diener, Sean M Gibbons
Microbial community-scale metabolic modelling predicts personalized short-chain fatty acid production profiles in the human gut. Nature microbiology 9 (7) (2024)
Freeman Lan, Jason Saba, Tyler D Ross, Zhichao Zhou, Katie Krauska, Karthik Anantharaman, Robert Landick, Ophelia S Venturelli
Massively parallel single-cell sequencing of diverse microbial populations. Nature methods (2024)
Freeman Lan, Jason Saba, Tyler D Ross, Zhichao Zhou, Katie Krauska, Karthik Anantharaman, Robert Landick, Ophelia S Venturelli
Massively parallel single-cell sequencing of diverse microbial populations. Nature methods (2024)
Nick Quinn-Bohmann, Tomasz Wilmanski, Katherine Ramos Sarmiento, Lisa Levy, Johanna W Lampe, Thomas Gurry, Noa Rappaport, Erin M Ostrem, Ophelia S Venturelli, Christian Diener, Sean M Gibbons
Microbial community-scale metabolic modelling predicts personalized short-chain fatty acid production profiles in the human gut. Nature microbiology (2024)
Nick Quinn-Bohmann, Tomasz Wilmanski, Katherine Ramos Sarmiento, Lisa Levy, Johanna W Lampe, Thomas Gurry, Noa Rappaport, Erin M Ostrem, Ophelia S Venturelli, Christian Diener, Sean M Gibbons
Microbial community-scale metabolic modelling predicts personalized short-chain fatty acid production profiles in the human gut. Nature microbiology 9 (7) (2024)
Freeman Lan, Jason Saba, Tyler D Ross, Zhichao Zhou, Katie Krauska, Karthik Anantharaman, Robert Landick, Ophelia S Venturelli
Massively parallel single-cell sequencing of diverse microbial populations. Nature methods 21 (2) (2024)
Jordy Evan Sulaiman, Jaron Thompson, Pak Lun Kevin Cheung, Yili Qian, Jericha Mill, Isabella James, Eugenio I Vivas, Judith A Simcox, Ophelia S Venturelli
Human gut microbiota interactions shape the long-term growth dynamics and evolutionary adaptations of Clostridioides difficile . bioRxiv : the preprint server for biology (2024)
Freeman Lan, Jason Saba, Tyler D Ross, Zhichao Zhou, Katie Krauska, Karthik Anantharaman, Robert Landick, Ophelia S Venturelli
Massively parallel single-cell sequencing of diverse microbial populations. Nature methods 21 (2) (2024)
Zachary P Harmer, Jaron C Thompson, David L Cole, Ophelia S Venturelli, Victor M Zavala, Megan N McClean
Dynamic Multiplexed Control and Modeling of Optogenetic Systems Using the High-Throughput Optogenetic Platform, Lustro. ACS synthetic biology 13 (5) (2024)
Zachary P Harmer, Jaron C Thompson, David L Cole, Ophelia S Venturelli, Victor M Zavala, Megan N McClean
Dynamic Multiplexed Control and Modeling of Optogenetic Systems Using the High-Throughput Optogenetic Platform, Lustro. ACS synthetic biology (2024)
Jordy Evan Sulaiman, Jaron Thompson, Yili Qian, Eugenio Vivas, Christian Diener, Sean M Gibbons, Nasia Safdar, Ophelia S Venturelli
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. bioRxiv : the preprint server for biology (2024)
Jordy Evan Sulaiman, Jaron Thompson, Yili Qian, Eugenio I Vivas, Christian Diener, Sean M Gibbons, Nasia Safdar, Ophelia S Venturelli
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. Nature communications 15 (1) (2024)
Jordy Evan Sulaiman, Jaron Thompson, Yili Qian, Eugenio I Vivas, Christian Diener, Sean M Gibbons, Nasia Safdar, Ophelia S Venturelli
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. bioRxiv : the preprint server for biology (2024)
Duane S Juang, Wren E Wightman, Gabriel L Lozano, Terry D Juang, Layla J Barkal, Jiaquan Yu, Manuel F Garavito, Amanda I Hurley, Ophelia S Venturelli, Jo Handelsman, David J Beebe
Microbial community interactions on a chip. Proceedings of the National Academy of Sciences of the United States of America 121 (39) (2024)
Zachary P Harmer, Jaron C Thompson, David L Cole, Ophelia S Venturelli, Victor M Zavala, Megan N McClean
Dynamic Multiplexed Control and Modeling of Optogenetic Systems Using the High-Throughput Optogenetic Platform, Lustro. ACS synthetic biology 13 (5) (2024)
Zachary P Harmer, Jaron C Thompson, David L Cole, Ophelia S Venturelli, Victor M Zavala, Megan N McClean
Dynamic Multiplexed Control and Modeling of Optogenetic Systems Using the High-Throughput Optogenetic Platform, Lustro. ACS synthetic biology (2024)
Freeman Lan, Jason Saba, Tyler D Ross, Zhichao Zhou, Katie Krauska, Karthik Anantharaman, Robert Landick, Ophelia S Venturelli
Massively parallel single-cell sequencing of diverse microbial populations. Nature methods 21 (2) (2024)
Freeman Lan, Jason Saba, Tyler D Ross, Zhichao Zhou, Katie Krauska, Karthik Anantharaman, Robert Landick, Ophelia S Venturelli
Massively parallel single-cell sequencing of diverse microbial populations. Nature methods 21 (2) (2024)
Jordy Evan Sulaiman, Jaron Thompson, Pak Lun Kevin Cheung, Yili Qian, Jericha Mill, Isabella James, Eugenio I Vivas, Judith A Simcox, Ophelia S Venturelli
Human gut microbiota interactions shape the long-term growth dynamics and evolutionary adaptations of Clostridioides difficile . bioRxiv : the preprint server for biology (2024)
Yu-Yu Cheng, Zhichao Zhou, James M Papadopoulos, Jason D Zuke, Tanya G Falbel, Karthik Anantharaman, Briana M Burton, Ophelia S Venturelli
Efficient plasmid transfer via natural competence in a microbial co-culture. Molecular systems biology 19 (3) (2023)
Yiyi Liu, Yu-Yu Cheng, Zhichao Zhou, Eugenio I Vivas, Matthew F Warren, Federico E Rey, Karthik Anantharaman, Ophelia S Venturelli
Shaping human gut community assembly and butyrate production by controlling the arginine dihydrolase pathway. bioRxiv : the preprint server for biology (2023)
Susan Hromada, Ophelia S Venturelli
Gut microbiota interspecies interactions shape the response of Clostridioides difficile to clinically relevant antibiotics. PLoS biology 21 (5) (2023)
Erin Ostrem Loss, Jaron Thompson, Pak Lun Kevin Cheung, Yili Qian, Ophelia S Venturelli
Carbohydrate complexity limits microbial growth and reduces the sensitivity of human gut communities to perturbations. Nature ecology & evolution 7 (1) (2023)
Erin Ostrem Loss, Jaron Thompson, Pak Lun Kevin Cheung, Yili Qian, Ophelia S Venturelli
Carbohydrate complexity limits microbial growth and reduces the sensitivity of human gut communities to perturbations. Nature ecology & evolution 7 (1) (2023)
Freeman Lan, Jason Saba, Yili Qian, Tyler Ross, Robert Landick, Ophelia S Venturelli
Single-cell analysis of multiple invertible promoters reveals differential inversion rates as a strong determinant of bacterial population heterogeneity. Science advances 9 (31) (2023)
Susan Hromada, Ophelia S Venturelli
Gut microbiota interspecies interactions shape the response of Clostridioides difficile to clinically relevant antibiotics. PLoS biology 21 (5) (2023)
Erin Ostrem Loss, Jaron Thompson, Pak Lun Kevin Cheung, Yili Qian, Ophelia S Venturelli
Carbohydrate complexity limits microbial growth and reduces the sensitivity of human gut communities to perturbations. Nature ecology & evolution 7 (1) (2023)
Yu-Yu Cheng, Zhengyi Chen, Xinyun Cao, Tyler D Ross, Tanya G Falbel, Briana M Burton, Ophelia S Venturelli
Programming bacteria for multiplexed DNA detection. Nature communications 14 (1) (2023)
Jaron C Thompson, Victor M Zavala, Ophelia S Venturelli
Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions. PLoS computational biology 19 (9) (2023)
Susan Hromada, Ophelia S Venturelli
Gut microbiota interspecies interactions shape the response of Clostridioides difficile to clinically relevant antibiotics. PLoS biology 21 (5) (2023)
Yu-Yu Cheng, Zhichao Zhou, James M Papadopoulos, Jason D Zuke, Tanya G Falbel, Karthik Anantharaman, Briana M Burton, Ophelia S Venturelli
Efficient plasmid transfer via natural competence in a microbial co-culture. Molecular systems biology 19 (3) (2023)
Susan Hromada, Ophelia S Venturelli
Gut microbiota interspecies interactions shape the response of Clostridioides difficile to clinically relevant antibiotics. PLoS biology 21 (5) (2023)
Yu-Yu Cheng, Zhichao Zhou, James M Papadopoulos, Jason D Zuke, Tanya G Falbel, Karthik Anantharaman, Briana M Burton, Ophelia S Venturelli
Efficient plasmid transfer via natural competence in a microbial co-culture. Molecular systems biology 19 (3) (2023)
Susan Hromada, Ophelia S Venturelli
Gut microbiota interspecies interactions shape the response of Clostridioides difficile to clinically relevant antibiotics. PLoS biology 21 (5) (2023)
Erin Ostrem Loss, Jaron Thompson, Pak Lun Kevin Cheung, Yili Qian, Ophelia S Venturelli
Carbohydrate complexity limits microbial growth and reduces the sensitivity of human gut communities to perturbations. Nature ecology & evolution (2023)
Erin Ostrem Loss, Jaron Thompson, Pak Lun Kevin Cheung, Yili Qian, Ophelia S Venturelli
Carbohydrate complexity limits microbial growth and reduces the sensitivity of human gut communities to perturbations. Nature ecology & evolution 7 (1) (2023)
Yu-Yu Cheng, Zhichao Zhou, James M Papadopoulos, Jason D Zuke, Tanya G Falbel, Karthik Anantharaman, Briana M Burton, Ophelia S Venturelli
Efficient plasmid transfer via natural competence in a microbial co-culture. Molecular systems biology 19 (3) (2023)
Yu-Yu Cheng, Zhichao Zhou, James M Papadopoulos, Jason D Zuke, Tanya G Falbel, Karthik Anantharaman, Briana M Burton, Ophelia S Venturelli
Efficient plasmid transfer via natural competence in a microbial co-culture. Molecular systems biology (2023)
Mayank Baranwal, Ryan L Clark, Jaron Thompson, Zeyu Sun, Alfred O Hero, Ophelia S Venturelli
Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics. eLife 11 (2022)
Susan Hromada, Yili Qian, Tyler B Jacobson, Ryan L Clark, Lauren Watson, Nasia Safdar, Daniel Amador-Noguez, Ophelia S Venturelli
Negative interactions determine Clostridioides difficile growth in synthetic human gut communities. Molecular systems biology 17 (10) (2022)
Ryan L Clark, Bryce M Connors, David M Stevenson, Susan E Hromada, Joshua J Hamilton, Daniel Amador-Noguez, Ophelia S Venturelli
Design of synthetic human gut microbiome assembly and butyrate production. Nature communications 12 (1) (2021)
Sonali Gupta, Tyler D Ross, Marcella M Gomez, Job L Grant, Philip A Romero, Ophelia S Venturelli
Investigating the dynamics of microbial consortia in spatially structured environments. Nature communications 11 (1) (2020)
Ophelia S Venturelli, Alex C Carr, Garth Fisher, Ryan H Hsu, Rebecca Lau, Benjamin P Bowen, Susan Hromada, Trent Northen, Adam P Arkin
Deciphering microbial interactions in synthetic human gut microbiome communities. Molecular systems biology 14 (6) (2018)
Xinyun Cao, Joshua J Hamilton, Ophelia S Venturelli
Understanding and Engineering Distributed Biochemical Pathways in Microbial Communities. Biochemistry 58 (2) (2018)

Ophelia S Venturelli.css-eqlu8i{font-size:small;padding-left:4px;} (Ophelia Venturelli)

Publication Activity (10 Years)

Top Topics

Top Venues

Ophelia S Venturelli (Ophelia Venturelli)