Paola Bonizzoni

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 13

Top Topics

Convolutional Neural Network

Top Venues

Bioinformatics (Oxford, England)

International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium)

This page only lists publications with an associated author ORCID identifier.

Publications

Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti, Xavier Didelot, Davide Cesare Monti, Yuri Pirola
RecGraph: recombination-aware alignment of sequences to variation graphs. Bioinformatics (Oxford, England) 40 (5) (2024)
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti, Xavier Didelot, Davide Cesare Monti, Yuri Pirola
RecGraph: recombination-aware alignment of sequences to variation graphs. Bioinformatics (Oxford, England) 40 (5) (2024)
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti, Xavier Didelot, Davide Cesare Monti, Yuri Pirola
RecGraph: recombination-aware alignment of sequences to variation graphs. Bioinformatics (Oxford, England) 40 (5) (2024)
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti, Xavier Didelot, Davide Cesare Monti, Yuri Pirola
RecGraph: recombination-aware alignment of sequences to variation graphs. Bioinformatics (Oxford, England) 40 (5) (2024)
Paola Bonizzoni, Christina Boucher, Davide Cozzi, Travis Gagie, Dominik Köppl, Massimiliano Rossi
Data Structures for SMEM-Finding in the PBWT. International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) 14240 (2023)
Paola Bonizzoni, Christina Boucher, Davide Cozzi, Travis Gagie, Dominik Köppl, Massimiliano Rossi
Data Structures for SMEM-Finding in the PBWT. International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) 14240 (2023)
Paola Bonizzoni, Christina Boucher, Davide Cozzi, Travis Gagie, Dominik Köppl, Massimiliano Rossi
Data Structures for SMEM-Finding in the PBWT. International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) 14240 (2023)
Jorge Avila Cartes, Santosh Anand, Simone Ciccolella, Paola Bonizzoni, Gianluca Della Vedova
Accurate and fast clade assignment via deep learning and frequency chaos game representation. GigaScience 12 (2022)
Luca Denti, Parsoa Khorsand, Paola Bonizzoni, Fereydoun Hormozdiari, Rayan Chikhi
SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads. Nature methods (2022)
Massimiliano Rossi, Marco Oliva, Paola Bonizzoni, Ben Langmead, Travis Gagie, Christina Boucher
Finding Maximal Exact Matches Using the r-Index. Journal of computational biology : a journal of computational molecular cell biology 29 (2) (2022)
Jorge Avila Cartes, Santosh Anand, Simone Ciccolella, Paola Bonizzoni, Gianluca Della Vedova
Accurate and fast clade assignment via deep learning and frequency chaos game representation. GigaScience 12 (2022)
Luca Denti, Parsoa Khorsand, Paola Bonizzoni, Fereydoun Hormozdiari, Rayan Chikhi
SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads. Nature methods (2022)
Jorge Avila Cartes, Santosh Anand, Simone Ciccolella, Paola Bonizzoni, Gianluca Della Vedova
Accurate and fast clade assignment via deep learning and frequency chaos game representation. GigaScience 12 (2022)