Xavier Didelot

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 63

Top Venues

Nature communications

The Journal of infectious diseases

Genome medicine

mBio

University of Warwick

University of Oxford (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Warwick Oct 01 2018

United Kingdom

Professor :: School of Life Sciences and Department of Statistics

Imperial College London Sep 01 2015 - Sep 30 2018

United Kingdom

Senior Lecturer :: School of Public Health

Imperial College London Apr 01 2012 - Aug 31 2015

United Kingdom

University Lecturer :: School of Public Health

University of Oxford Jul 01 2010 - Mar 30 2012

United Kingdom

Leadership Fellow :: Nuffield Department of Medicine

University of Warwick Jul 01 2007 - Jun 30 2010

United Kingdom

Research Fellow :: Department of Statistics

University of Oxford Jul 01 2004 - Jun 30 2007

United Kingdom

Research Assistant :: Department of Statistics

Education History

University of Oxford Sep 01 2003 - Jun 30 2007

United Kingdom

PHD :: Department of Statistics

University of Oxford Sep 01 2002 - Aug 31 2003

United Kingdom

MSC :: Department of Computer Science

Publications

Yu Wan, Ashleigh C Myall, Adhiratha Boonyasiri, Frances Bolt, Alice Ledda, Siddharth Mookerjee, Andrea Y Weiße, María Getino, Jane F Turton, Hala Abbas, Ruta Prakapaite, Akshay Sabnis, Alireza Abdolrasouli, Kenny Malpartida-Cardenas, Luca Miglietta, Hugo Donaldson, Mark Gilchrist, Katie L Hopkins, Matthew J Ellington, Jonathan A Otter, Gerald Larrouy-Maumus, Andrew M Edwards, Jesus Rodriguez-Manzano, Xavier Didelot, Mauricio Barahona, Alison H Holmes, Elita Jauneikaite, Frances Davies
Integrated Analysis of Patient Networks and Plasmid Genomes to Investigate a Regional, Multispecies Outbreak of Carbapenemase-Producing Enterobacterales Carrying Both blaIMP and mcr-9 Genes. The Journal of infectious diseases 230 (1) (2024)
Jake Carson, Matt Keeling, David Wyllie, Paolo Ribeca, Xavier Didelot
Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host. Molecular biology and evolution 41 (1) (2024)
Matthew P Moore, Mirjam Laager, Paolo Ribeca, Xavier Didelot
KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes. PLoS genetics 20 (4) (2024)
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti, Xavier Didelot, Davide Cesare Monti, Yuri Pirola
RecGraph: recombination-aware alignment of sequences to variation graphs. Bioinformatics (Oxford, England) 40 (5) (2024)
Michelle Kendall, Luca Ferretti, Chris Wymant, Daphne Tsallis, James Ian Mackie Petrie, Andrea Di Francia, Francesco Di Lauro, Lucie Abeler-Dörner, Harrison Manley, Jasmina Panovska-Griffiths, Alice Ledda, Xavier Didelot, Christophe Fraser
Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements. Science (New York, N.Y.) 385 (6710) (2024)
Camus Nimmo, Arturo Torres Ortiz, Cedric C S Tan, Juanita Pang, Mislav Acman, James D Millard, Leonardo Montagnani, Alison D Grant, Max O'Donnell, Alex Pym, Ola Brønstad Brynildsrud, Vegard Eldholm, Louis Grandjean, Xavier Didelot, Francois Balloux, Lucy van Dorp
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis. Genome medicine 16 (1) (2024)
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti, Xavier Didelot, Davide Cesare Monti, Yuri Pirola
RecGraph: recombination-aware alignment of sequences to variation graphs. Bioinformatics (Oxford, England) 40 (5) (2024)
Yu Wan, Ashleigh C Myall, Adhiratha Boonyasiri, Frances Bolt, Alice Ledda, Siddharth Mookerjee, Andrea Y Weiße, María Getino, Jane F Turton, Hala Abbas, Ruta Prakapaite, Akshay Sabnis, Alireza Abdolrasouli, Kenny Malpartida-Cardenas, Luca Miglietta, Hugo Donaldson, Mark Gilchrist, Katie L Hopkins, Matthew J Ellington, Jonathan A Otter, Gerald Larrouy-Maumus, Andrew M Edwards, Jesus Rodriguez-Manzano, Xavier Didelot, Mauricio Barahona, Alison H Holmes, Elita Jauneikaite, Frances Davies
Integrated analysis of patient networks and plasmid genomes reveals a regional, multi-species outbreak of carbapenemase-producing Enterobacterales carrying both blaIMP and mcr-9 genes. The Journal of infectious diseases (2024)
Yu Wan, Ashleigh C Myall, Adhiratha Boonyasiri, Frances Bolt, Alice Ledda, Siddharth Mookerjee, Andrea Y Weiße, María Getino, Jane F Turton, Hala Abbas, Ruta Prakapaite, Akshay Sabnis, Alireza Abdolrasouli, Kenny Malpartida-Cardenas, Luca Miglietta, Hugo Donaldson, Mark Gilchrist, Katie L Hopkins, Matthew J Ellington, Jonathan A Otter, Gerald Larrouy-Maumus, Andrew M Edwards, Jesus Rodriguez-Manzano, Xavier Didelot, Mauricio Barahona, Alison H Holmes, Elita Jauneikaite, Frances Davies
Integrated analysis of patient networks and plasmid genomes reveals a regional, multi-species outbreak of carbapenemase-producing Enterobacterales carrying both blaIMP and mcr-9 genes. The Journal of infectious diseases (2024)
Matthew P Moore, Mirjam Laager, Paolo Ribeca, Xavier Didelot
KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes. PLoS genetics 20 (4) (2024)
Michelle Kendall, Luca Ferretti, Chris Wymant, Daphne Tsallis, James Ian Mackie Petrie, Andrea Di Francia, Francesco Di Lauro, Lucie Abeler-Dörner, Harrison Manley, Jasmina Panovska-Griffiths, Alice Ledda, Xavier Didelot, Christophe Fraser
Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements. Science (New York, N.Y.) 385 (6710) (2024)
Camus Nimmo, Arturo Torres Ortiz, Cedric C S Tan, Juanita Pang, Mislav Acman, James D Millard, Leonardo Montagnani, Alison D Grant, Max O'Donnell, Alex Pym, Ola Brønstad Brynildsrud, Vegard Eldholm, Louis Grandjean, Xavier Didelot, Francois Balloux, Lucy van Dorp
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis. Genome medicine 16 (1) (2024)
Matthew P Moore, Mirjam Laager, Paolo Ribeca, Xavier Didelot
KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes. PLoS genetics 20 (4) (2024)
Yu Wan, Ashleigh C Myall, Adhiratha Boonyasiri, Frances Bolt, Alice Ledda, Siddharth Mookerjee, Andrea Y Weiße, María Getino, Jane F Turton, Hala Abbas, Ruta Prakapaite, Akshay Sabnis, Alireza Abdolrasouli, Kenny Malpartida-Cardenas, Luca Miglietta, Hugo Donaldson, Mark Gilchrist, Katie L Hopkins, Matthew J Ellington, Jonathan A Otter, Gerald Larrouy-Maumus, Andrew M Edwards, Jesus Rodriguez-Manzano, Xavier Didelot, Mauricio Barahona, Alison H Holmes, Elita Jauneikaite, Frances Davies
Integrated Analysis of Patient Networks and Plasmid Genomes to Investigate a Regional, Multispecies Outbreak of Carbapenemase-Producing Enterobacterales Carrying Both blaIMP and mcr-9 Genes. The Journal of infectious diseases 230 (1) (2024)
Jake Carson, Matt Keeling, David Wyllie, Paolo Ribeca, Xavier Didelot
Inference of infectious disease transmission through a relaxed bottleneck using multiple genomes per host. Molecular biology and evolution (2024)
Ana Vieira, Yu Wan, Yan Ryan, Ho Kwong Li, Rebecca L Guy, Maria Papangeli, Kristin K Huse, Lucy C Reeves, Valerie W C Soo, Roger Daniel, Alessandra Harley, Karen Broughton, Chenchal Dhami, Mark Ganner, Marjorie A Ganner, Zaynab Mumin, Maryam Razaei, Emma Rundberg, Rufat Mammadov, Ewurabena A Mills, Vincenzo Sgro, Kai Yi Mok, Xavier Didelot, Nicholas J Croucher, Elita Jauneikaite, Theresa Lamagni, Colin Stewart Brown, Juliana Coelho, Shiranee Sriskandan
Rapid expansion and international spread of M1 UK in the post-pandemic UK upsurge of Streptococcus pyogenes. Nature communications 15 (1) (2024)
Camus Nimmo, Arturo Torres Ortiz, Cedric C S Tan, Juanita Pang, Mislav Acman, James D Millard, Leonardo Montagnani, Alison D Grant, Max O'Donnell, Alex Pym, Ola Brønstad Brynildsrud, Vegard Eldholm, Louis Grandjean, Xavier Didelot, Francois Balloux, Lucy van Dorp
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis. Genome medicine 16 (1) (2024)
Camus Nimmo, Arturo Torres Ortiz, Cedric C S Tan, Juanita Pang, Mislav Acman, James D Millard, Leonardo Montagnani, Alison D Grant, Max O'Donnell, Alex Pym, Ola Brønstad Brynildsrud, Vegard Eldholm, Louis Grandjean, Xavier Didelot, Francois Balloux, Lucy van Dorp
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis. Genome medicine 16 (1) (2024)
Yu Wan, Ashleigh C Myall, Adhiratha Boonyasiri, Frances Bolt, Alice Ledda, Siddharth Mookerjee, Andrea Y Weiße, María Getino, Jane F Turton, Hala Abbas, Ruta Prakapaite, Akshay Sabnis, Alireza Abdolrasouli, Kenny Malpartida-Cardenas, Luca Miglietta, Hugo Donaldson, Mark Gilchrist, Katie L Hopkins, Matthew J Ellington, Jonathan A Otter, Gerald Larrouy-Maumus, Andrew M Edwards, Jesus Rodriguez-Manzano, Xavier Didelot, Mauricio Barahona, Alison H Holmes, Elita Jauneikaite, Frances Davies
Integrated analysis of patient networks and plasmid genomes reveals a regional, multi-species outbreak of carbapenemase-producing Enterobacterales carrying both blaIMP and mcr-9 genes. The Journal of infectious diseases (2024)
Yu Wan, Ashleigh C Myall, Adhiratha Boonyasiri, Frances Bolt, Alice Ledda, Siddharth Mookerjee, Andrea Y Weiße, María Getino, Jane F Turton, Hala Abbas, Ruta Prakapaite, Akshay Sabnis, Alireza Abdolrasouli, Kenny Malpartida-Cardenas, Luca Miglietta, Hugo Donaldson, Mark Gilchrist, Katie L Hopkins, Matthew J Ellington, Jonathan A Otter, Gerald Larrouy-Maumus, Andrew M Edwards, Jesus Rodriguez-Manzano, Xavier Didelot, Mauricio Barahona, Alison H Holmes, Elita Jauneikaite, Frances Davies
Integrated Analysis of Patient Networks and Plasmid Genomes to Investigate a Regional, Multispecies Outbreak of Carbapenemase-Producing Enterobacterales Carrying Both blaIMP and mcr-9 Genes. The Journal of infectious diseases 230 (1) (2024)
Jake Carson, Matt Keeling, David Wyllie, Paolo Ribeca, Xavier Didelot
Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host. Molecular biology and evolution 41 (1) (2024)
Yu Wan, Ashleigh C Myall, Adhiratha Boonyasiri, Frances Bolt, Alice Ledda, Siddharth Mookerjee, Andrea Y Weiße, María Getino, Jane F Turton, Hala Abbas, Ruta Prakapaite, Akshay Sabnis, Alireza Abdolrasouli, Kenny Malpartida-Cardenas, Luca Miglietta, Hugo Donaldson, Mark Gilchrist, Katie L Hopkins, Matthew J Ellington, Jonathan A Otter, Gerald Larrouy-Maumus, Andrew M Edwards, Jesus Rodriguez-Manzano, Xavier Didelot, Mauricio Barahona, Alison H Holmes, Elita Jauneikaite, Frances Davies
Integrated analysis of patient networks and plasmid genomes reveals a regional, multi-species outbreak of carbapenemase-producing Enterobacterales carrying both blaIMP and mcr-9 genes. The Journal of infectious diseases (2024)
Michelle Kendall, Luca Ferretti, Chris Wymant, Daphne Tsallis, James Ian Mackie Petrie, Andrea Di Francia, Francesco Di Lauro, Lucie Abeler-Dörner, Harrison Manley, Jasmina Panovska-Griffiths, Alice Ledda, Xavier Didelot, Christophe Fraser
Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements. Science (New York, N.Y.) (2024)
Ana Vieira, Yu Wan, Yan Ryan, Ho Kwong Li, Rebecca L Guy, Maria Papangeli, Kristin K Huse, Lucy C Reeves, Valerie W C Soo, Roger Daniel, Alessandra Harley, Karen Broughton, Chenchal Dhami, Mark Ganner, Marjorie A Ganner, Zaynab Mumin, Maryam Razaei, Emma Rundberg, Rufat Mammadov, Ewurabena A Mills, Vincenzo Sgro, Kai Yi Mok, Xavier Didelot, Nicholas J Croucher, Elita Jauneikaite, Theresa Lamagni, Colin Stewart Brown, Juliana Coelho, Shiranee Sriskandan
Rapid expansion and international spread of M1 UK in the post-pandemic UK upsurge of Streptococcus pyogenes. Nature communications 15 (1) (2024)
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti, Xavier Didelot, Davide Cesare Monti, Yuri Pirola
RecGraph: recombination-aware alignment of sequences to variation graphs. Bioinformatics (Oxford, England) 40 (5) (2024)
Camus Nimmo, Arturo Torres Ortiz, Cedric C S Tan, Juanita Pang, Mislav Acman, James D Millard, Leonardo Montagnani, Alison D Grant, Max O'Donnell, Alex Pym, Ola Brønstad Brynildsrud, Vegard Eldholm, Louis Grandjean, Xavier Didelot, Francois Balloux, Lucy van Dorp
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis. Genome medicine 16 (1) (2024)
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti, Xavier Didelot, Davide Cesare Monti, Yuri Pirola
RecGraph: recombination-aware alignment of sequences to variation graphs. Bioinformatics (Oxford, England) 40 (5) (2024)
Yu Wan, Ashleigh C Myall, Adhiratha Boonyasiri, Frances Bolt, Alice Ledda, Siddharth Mookerjee, Andrea Y Weiße, María Getino, Jane F Turton, Hala Abbas, Ruta Prakapaite, Akshay Sabnis, Alireza Abdolrasouli, Kenny Malpartida-Cardenas, Luca Miglietta, Hugo Donaldson, Mark Gilchrist, Katie L Hopkins, Matthew J Ellington, Jonathan A Otter, Gerald Larrouy-Maumus, Andrew M Edwards, Jesus Rodriguez-Manzano, Xavier Didelot, Mauricio Barahona, Alison H Holmes, Elita Jauneikaite, Frances Davies
Integrated analysis of patient networks and plasmid genomes reveals a regional, multi-species outbreak of carbapenemase-producing Enterobacterales carrying both blaIMP and mcr-9 genes. The Journal of infectious diseases (2024)
Sadaf Rasheed Mughal, Sadia Ambreen Niazi, Thuy Do, Steven C Gilbert, Xavier Didelot, David R Radford, David Beighton
Genomic Diversity among Actinomyces naeslundii Strains and Closely Related Species. Microorganisms 11 (2) (2023)
Arturo Torres Ortiz, Michelle Kendall, Nathaniel Storey, James Hatcher, Helen Dunn, Sunando Roy, Rachel Williams, Charlotte Williams, Richard A Goldstein, Xavier Didelot, Kathryn Harris, Judith Breuer, Louis Grandjean
Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks. eLife 12 (2023)
Michelle Kendall, Daphne Tsallis, Chris Wymant, Andrea Di Francia, Yakubu Balogun, Xavier Didelot, Luca Ferretti, Christophe Fraser
Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year. Nature communications 14 (1) (2023)
Sadaf Rasheed Mughal, Sadia Ambreen Niazi, Thuy Do, Steven C Gilbert, Xavier Didelot, David R Radford, David Beighton
Genomic Diversity among Actinomyces naeslundii Strains and Closely Related Species. Microorganisms 11 (2) (2023)
Kate E Dingle, Jane Freeman, Xavier Didelot, T Phuong Quan, David W Eyre, Jeremy Swann, William D Spittal, Emma V Clark, Keith A Jolley, A Sarah Walker, Mark H Wilcox, Derrick W Crook
Penicillin Binding Protein Substitutions Cooccur with Fluoroquinolone Resistance in Epidemic Lineages of Multidrug-Resistant Clostridioides difficile. mBio (2023)
Michelle Kendall, Daphne Tsallis, Chris Wymant, Andrea Di Francia, Yakubu Balogun, Xavier Didelot, Luca Ferretti, Christophe Fraser
Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year. Nature communications 14 (1) (2023)
Michelle Kendall, Daphne Tsallis, Chris Wymant, Andrea Di Francia, Yakubu Balogun, Xavier Didelot, Luca Ferretti, Christophe Fraser
Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year. Nature communications 14 (1) (2023)
Sadaf Rasheed Mughal, Sadia Ambreen Niazi, Thuy Do, Steven C Gilbert, Xavier Didelot, David R Radford, David Beighton
Genomic Diversity among Actinomyces naeslundii Strains and Closely Related Species. Microorganisms 11 (2) (2023)
David Helekal, Matt J Keeling, Yonatan Hagai Grad, Xavier Didelot
Estimating the fitness cost and benefit of antimicrobial resistance from pathogen genomic data. Journal of the Royal Society, Interface 20 (203) (2023)
Michelle Kendall, Daphne Tsallis, Chris Wymant, Andrea Di Francia, Yakubu Balogun, Xavier Didelot, Luca Ferretti, Christophe Fraser
Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year. Nature communications 14 (1) (2023)
Bazezew Yenew, Arash Ghodousi, Getu Diriba, Ephrem Tesfaye, Andrea Maurizio Cabibbe, Misikir Amare, Shewki Moga, Ayinalem Alemu, Biniyam Dagne, Waganeh Sinshaw, Helina Molallign Mollalign, Abyot Meaza, Mengistu Tadesse, Dinka Fikadu Gamtesa, Yeshiwork Abebaw, Getachew Seid, Betselot Zerihun, Melak Getu, Matteo Chiacchiaretta, Cyril Gaudin, Michael Marceau, Xavier Didelot, Getachew Tolera, Saro Abdella, Abebaw Kebede, Muluwork Getahun, Zemedu Mehammed, Philip Supply, Daniela Maria Cirillo
A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex. Nature communications 14 (1) (2023)
Michelle Kendall, Daphne Tsallis, Chris Wymant, Andrea Di Francia, Yakubu Balogun, Xavier Didelot, Luca Ferretti, Christophe Fraser
Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year. Nature communications 14 (1) (2023)
Xavier Didelot, Vinicius Franceschi, Simon D W Frost, Ann Dennis, Erik M Volz
Model design for nonparametric phylodynamic inference and applications to pathogen surveillance. Virus evolution 9 (1) (2023)
Sadaf Rasheed Mughal, Sadia Ambreen Niazi, Thuy Do, Steven C Gilbert, Xavier Didelot, David R Radford, David Beighton
Genomic Diversity among Actinomyces naeslundii Strains and Closely Related Species. Microorganisms 11 (2) (2023)
Xavier Didelot, Charles Morris Evans
London parochial burial records from 1563 to 1665 indicate higher plague death rates for males than females: Some possible demographic and social explanations. PloS one 17 (8) (2022)
Arturo Torres Ortiz, Michelle Kendall, Nathaniel Storey, James Hatcher, Helen Dunn, Sunando Roy, Rachel Williams, Charlotte Williams, Richard A Goldstein, Xavier Didelot, Kathryn Harris, Judith Breuer, Louis Grandjean
Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks. bioRxiv : the preprint server for biology (2022)
Jesper Larsen, Claire L Raisen, Xiaoliang Ba, Nicholas J Sadgrove, Guillermo Federico Padilla-González, Monique S J Simmonds, Igor Loncaric, Heidrun Kerschner, Petra Apfalter, Rainer Hartl, Ariane Deplano, Stien Vandendriessche, Barbora Černá Bolfíková, Pavel Hulva, Maiken C Arendrup, Rasmus K Hare, Céline Barnadas, Marc Stegger, Raphael N Sieber, Robert Leo Skov, Andreas Petersen, Øystein Angen, Sophie Lund Rasmussen, Carmen Espinosa-Gongora, Frank Møller Aarestrup, Laura J Lindholm, Suvi M Nykäsenoja, Frederic Laurent, Karsten Becker, Birgit Walther, Corinna Kehrenberg, Christiane Cuny, Franziska Layer, Guido Werner, Wolfgang Witte, Ivonne Stamm, Paolo Moroni, Hannah J Jørgensen, Herminia de Lencastre, Emilia Cercenado, Fernando García-Garrote, Stefan Börjesson, Sara Hæggman, Vincent Perreten, Christopher J Teale, Andrew S Waller, Bruno Pichon, Martin D Curran, Matthew J Ellington, John J Welch, Sharon J Peacock, David J Seilly, Fiona J E Morgan, Julian Parkhill, Nazreen F Hadjirin, Jodi A Lindsay, Matthew T G Holden, Giles F Edwards, Geoffrey Foster, Gavin K Paterson, Xavier Didelot, Mark A Holmes, Ewan M Harrison, Anders R Larsen
Emergence of methicillin resistance predates the clinical use of antibiotics. Nature 602 (7895) (2022)
Xavier Didelot, Julian Parkhill
A scalable analytical approach from bacterial genomes to epidemiology. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1861) (2022)
Nicholas M Fountain-Jones, Simona J Kraberger, Roderick B Gagne, Marie L J Gilbertson, Daryl R Trumbo, Michael A Charleston, Patricia E Salerno, W Chris Funk, Kevin Crooks, Kenneth Logan, Mathew Alldredge, Simon Dellicour, Guy Baele, Xavier Didelot, Susan VandeWoude, Scott Carver, Meggan E Craft
Hunting alters viral transmission and evolution in a large carnivore. Nature ecology & evolution 6 (2) (2022)
Arturo Torres Ortiz, Jorge Coronel, Julia Rios Vidal, Cesar Bonilla, David A J Moore, Robert H Gilman, Francois Balloux, Onn Min Kon, Xavier Didelot, Louis Grandjean
Genomic signatures of pre-resistance in Mycobacterium tuberculosis. Nature communications 12 (1) (2021)
Xavier Didelot, Lily Geidelberg, null null, Erik M Volz
Model design for non-parametric phylodynamic inference and applications to pathogen surveillance. bioRxiv : the preprint server for biology (2021)
Daniel R Knight, Korakrit Imwattana, Brian R Kullin, Enzo Guerrero-Araya, Daniel Paredes-Sabja, Xavier Didelot, Kate E Dingle, David W Eyre, César Rodríguez, Thomas V Riley
Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy. eLife 10 (2021)
Haoqiu Wang, Chao Yang, Zhou Sun, Wei Zheng, Wei Zhang, Hua Yu, Yarong Wu, Xavier Didelot, Ruifu Yang, Jingcao Pan, Yujun Cui
Genomic epidemiology of Vibrio cholerae reveals the regional and global spread of two epidemic non-toxigenic lineages. PLoS neglected tropical diseases 14 (2) (2020)
Kate E Dingle, Xavier Didelot, T Phuong Quan, David W Eyre, Nicole E Stoesser, Charis A Marwick, John Coia, Derek Brown, Sarah Buchanan, Umer Z Ijaz, Cosmika Goswami, Gill Douce, Warren N Fawley, Mark H Wilcox, Timothy E A Peto, A Sarah Walker, Derrick W Crook
A Role for Tetracycline Selection in Recent Evolution of Agriculture-Associated Clostridium difficile PCR Ribotype 078. mBio 10 (2) (2019)
Xavier Didelot, Koen B Pouwels
Machine-learning-assisted selection of antibiotic prescription. Nature medicine 25 (7) (2019)
Lilith K Whittles, Peter J White, Xavier Didelot
A dynamic power-law sexual network model of gonorrhoea outbreaks. PLoS computational biology 15 (3) (2019)
Caitlin Collins, Xavier Didelot
A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination. PLoS computational biology 14 (2) (2018)
Xavier Didelot, Lilith K Whittles, Ian Hall
Model-based analysis of an outbreak of bubonic plague in Cairo in 1801. Journal of the Royal Society, Interface 14 (131) (2018)
Lavanya Challagundla, Xiao Luo, Isabella A Tickler, Xavier Didelot, David C Coleman, Anna C Shore, Geoffrey W Coombs, Daniel O Sordelli, Eric L Brown, Robert Skov, Anders Rhod Larsen, Jinnethe Reyes, Iraida E Robledo, Guillermo J Vazquez, Raul Rivera, Paul D Fey, Kurt Stevenson, Shu-Hua Wang, Barry N Kreiswirth, Jose R Mediavilla, Cesar A Arias, Paul J Planet, Rathel L Nolan, Fred C Tenover, Richard V Goering, D Ashley Robinson
Range Expansion and the Origin of USA300 North American Epidemic Methicillin-Resistant Staphylococcus aureus. mBio 9 (1) (2018)
Lilith K Whittles, Peter J White, John Paul, Xavier Didelot
Epidemiological Trends of Antibiotic Resistant Gonorrhoea in the United Kingdom. Antibiotics (Basel, Switzerland) 7 (3) (2018)
Lilith K Whittles, Peter J White, Xavier Didelot
Estimating the fitness cost and benefit of cefixime resistance in Neisseria gonorrhoeae to inform prescription policy: A modelling study. PLoS medicine 14 (10) (2017)
Don Klinkenberg, Jantien A Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga
Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks. PLoS computational biology 13 (5) (2017)
Lilith K Whittles, Xavier Didelot
Epidemiological analysis of the Eyam plague outbreak of 1665-1666. Proceedings. Biological sciences 283 (1830) (2017)
Vegard Eldholm, Adrien Rieux, Johana Monteserin, Julia Montana Lopez, Domingo Palmero, Beatriz Lopez, Viviana Ritacco, Xavier Didelot, Francois Balloux
Impact of HIV co-infection on the evolution and transmission of multidrug-resistant tuberculosis. eLife 5 (2016)
Xavier Didelot, Janina Dordel, Lilith K Whittles, Caitlin Collins, Nicole Bilek, Cynthia J Bishop, Peter J White, David M Aanensen, Julian Parkhill, Stephen D Bentley, Brian G Spratt, Simon R Harris
Genomic Analysis and Comparison of Two Gonorrhea Outbreaks. mBio 7 (3) (2016)

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Publication Activity (10 Years)

Top Topics

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Xavier Didelot