Patrick D Schloss

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 67

Top Topics

Clostridium Difficile

Top Venues

Microbiology resource announcements

Applied and environmental microbiology

This page only lists publications with an associated author ORCID identifier.

Publications

Patrick D Schloss
Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses. mSphere 9 (2) (2024)
Patrick D Schloss
Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses. mSphere 9 (2) (2024)
Patrick D Schloss
Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses. mSphere 9 (2) (2024)
Patrick D Schloss
Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses. mSphere (2024)
Patrick D Schloss
Waste not, want not: revisiting the analysis that called into question the practice of rarefaction. mSphere (2023)
Patrick D Schloss
The Riffomonas YouTube Channel: An Educational Resource To Foster Reproducible Research Practices. Microbiology resource announcements 12 (2) (2023)
Patrick D Schloss
The Riffomonas YouTube Channel: An Educational Resource To Foster Reproducible Research Practices. Microbiology resource announcements (2023)
Courtney R Armour, Kelly L Sovacool, William L Close, Begüm D Topçuoğlu, Jenna Wiens, Patrick D Schloss
Machine learning classification by fitting amplicon sequences to existing OTUs. mSphere (2023)
Patrick D Schloss, Christina A Cuomo
More evidence of Impact Factor Mania. Microbiology spectrum (2023)
Patrick D Schloss
The Riffomonas YouTube Channel: An Educational Resource To Foster Reproducible Research Practices. Microbiology resource announcements 12 (2) (2023)
Patrick D Schloss
The Riffomonas YouTube Channel: An Educational Resource To Foster Reproducible Research Practices. Microbiology resource announcements 12 (2) (2023)
Nicholas A Lesniak, Sarah Tomkovich, Andrew Henry, Ana Taylor, Joanna Colovas, Lucas Bishop, Kathryn McBride, Patrick D Schloss
Diluted Fecal Community Transplant Restores Clostridioides difficile Colonization Resistance to Antibiotic-Perturbed Murine Communities. mBio 13 (4) (2022)
Madeline R Barron, Kelly L Sovacool, Lisa Abernathy-Close, Kimberly C Vendrov, Alexandra K Standke, Ingrid L Bergin, Patrick D Schloss, Vincent B Young
Intestinal Inflammation Reversibly Alters the Microbiota to Drive Susceptibility to Clostridioides difficile Colonization in a Mouse Model of Colitis. mBio 13 (4) (2022)
Kelly L Sovacool, Sarah L Westcott, M Brodie Mumphrey, Gabrielle A Dotson, Patrick D Schloss
OptiFit: an Improved Method for Fitting Amplicon Sequences to Existing OTUs. mSphere 7 (1) (2022)
Courtney R Armour, Begüm D Topçuoğlu, Andrea Garretto, Patrick D Schloss
A Goldilocks Principle for the Gut Microbiome: Taxonomic Resolution Matters for Microbiome-Based Classification of Colorectal Cancer. mBio (2022)
Nicholas A Lesniak, Alyxandria M Schubert, Kaitlin J Flynn, Jhansi L Leslie, Hamide Sinani, Ingrid L Bergin, Vincent B Young, Patrick D Schloss
The Gut Bacterial Community Potentiates Clostridioides difficile Infection Severity. mBio 13 (4) (2022)
Nicholas A Lesniak, Alyxandria M Schubert, Hamide Sinani, Patrick D Schloss
Clearance of Clostridioides difficile Colonization Is Associated with Antibiotic-Specific Bacterial Changes. mSphere 6 (3) (2021)
Jhansi L Leslie, Matthew L Jenior, Kimberly C Vendrov, Alexandra K Standke, Madeline R Barron, Tricia J O'Brien, Lavinia Unverdorben, Pariyamon Thaprawat, Ingrid L Bergin, Patrick D Schloss, Vincent B Young
Protection from Lethal Clostridioides difficile Infection via Intraspecies Competition for Cogerminant. mBio 12 (2) (2021)
Ada K Hagan, Begüm D Topçuoğlu, Mia E Gregory, Hazel A Barton, Patrick D Schloss
Erratum for Hagan et al., "Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis". mBio 12 (2) (2021)
Sarah Tomkovich, Ana Taylor, Jacob King, Joanna Colovas, Lucas Bishop, Kathryn McBride, Sonya Royzenblat, Nicholas A Lesniak, Ingrid L Bergin, Patrick D Schloss
An Osmotic Laxative Renders Mice Susceptible to Prolonged Clostridioides difficile Colonization and Hinders Clearance. mSphere 6 (5) (2021)
Mark T Heise, Terence S Dermody, Arturo Casadevall, Rozanne M Sandri-Goldin, Patrick D Schloss
The Decision To Publish Gutierrez-Alvarez et al., "Middle East Respiratory Syndrome Coronavirus Gene 5 Modulates Pathogenesis in Mice". Journal of virology 95 (3) (2021)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. mSphere 5 (4) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. Infection and immunity 88 (10) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. Microbiology resource announcements 9 (32) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. Journal of bacteriology 202 (19) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. Clinical microbiology reviews 33 (4) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. Applied and environmental microbiology 86 (18) (2020)
Sarah Tomkovich, Joshua M A Stough, Lucas Bishop, Patrick D Schloss
The Initial Gut Microbiota and Response to Antibiotic Perturbation Influence Clostridioides difficile Clearance in Mice. mSphere 5 (5) (2020)
Begüm D Topçuoğlu, Nicholas A Lesniak, Mack T Ruffin, Jenna Wiens, Patrick D Schloss
A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems. mBio 11 (3) (2020)
Ada K Hagan, Begüm D Topçuoğlu, Mia E Gregory, Hazel A Barton, Patrick D Schloss
Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis. mBio 11 (6) (2020)
Patrick D Schloss
Reintroducing mothur: 10 Years Later. Applied and environmental microbiology 86 (2) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. mBio 11 (4) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. Molecular and cellular biology 40 (19) (2020)
Joshua M A Stough, Andrew J Beaudoin, Patrick D Schloss
Coding-Complete RNA Virus Genomes Assembled from Murine Cecal Metatranscriptomes. Microbiology resource announcements 9 (12) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. Journal of virology 94 (20) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. mSystems 5 (4) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. Journal of clinical microbiology 58 (10) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. Antimicrobial agents and chemotherapy 64 (10) (2020)
Patrick D Schloss, Melissa Junior, Rebecca Alvania, Cesar A Arias, Andreas Baumler, Arturo Casadevall, Corrella Detweiler, Harold Drake, Jack Gilbert, Michael J Imperiale, Susan T Lovett, Stanley Maloy, Alexander J McAdam, Irene L G Newton, Michael J Sadowsky, Rozanne M Sandri-Goldin, Thomas J Silhavy, Peter Tontonoz, Jo-Anne H Young, Craig E Cameron, Isaac Cann, A Oveta Fuller, Ariangela J Kozik
The ASM Journals Committee Values the Contributions of Black Microbiologists. Microbiology and molecular biology reviews : MMBR 84 (3) (2020)
Ada K Hagan, Nicholas A Lesniak, Marcy J Balunas, Lucas Bishop, William L Close, Matthew K Doherty, Amanda G Elmore, Kaitlin J Flynn, Geoffrey D Hannigan, Charlie C Koumpouras, Matthew L Jenior, Ariangela J Kozik, Kathryn McBride, Samara B Rifkin, Joshua M A Stough, Kelly L Sovacool, Marc A Sze, Sarah Tomkovich, Begum D Topcuoglu, Patrick D Schloss
Ten simple rules to increase computational skills among biologists with Code Clubs. PLoS computational biology 16 (8) (2020)
Damian Maseda, Joseph P Zackular, Bruno Trindade, Leslie Kirk, Jennifer Lising Roxas, Lisa M Rogers, Mary K Washington, Liping Du, Tatsuki Koyama, V K Viswanathan, Gayatri Vedantam, Patrick D Schloss, Leslie J Crofford, Eric P Skaar, David M Aronoff
Nonsteroidal Anti-inflammatory Drugs Alter the Microbiota and Exacerbate Clostridium difficile Colitis while Dysregulating the Inflammatory Response. mBio 10 (1) (2019)
Marc A Sze, Patrick D Schloss
The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data. mSphere 4 (3) (2019)
Marc A Sze, Begüm D Topçuoğlu, Nicholas A Lesniak, Mack T Ruffin, Patrick D Schloss
Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure. mBio 10 (4) (2019)
Nielson T Baxter, Nicholas A Lesniak, Hamide Sinani, Patrick D Schloss, Nicole M Koropatkin
The Glucoamylase Inhibitor Acarbose Has a Diet-Dependent and Reversible Effect on the Murine Gut Microbiome. mSphere 4 (1) (2019)
Sarah Tomkovich, Nicholas A Lesniak, Yuan Li, Lucas Bishop, Madison J Fitzgerald, Patrick D Schloss
The Proton Pump Inhibitor Omeprazole Does Not Promote Clostridioides difficile Colonization in a Murine Model. mSphere 4 (6) (2019)
Matthew L Jenior, Jhansi L Leslie, Vincent B Young, Patrick D Schloss
Clostridium difficile Alters the Structure and Metabolism of Distinct Cecal Microbiomes during Initial Infection To Promote Sustained Colonization. mSphere 3 (3) (2018)
Geoffrey D Hannigan, Melissa B Duhaime, Mack T Ruffin, Charlie C Koumpouras, Patrick D Schloss
Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer Virome. mBio 9 (6) (2018)
Geoffrey D Hannigan, Melissa B Duhaime, Danai Koutra, Patrick D Schloss
Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome. PLoS computational biology 14 (4) (2018)
Patrick D Schloss
In Defense of an Academic Career in Microbiology. mSphere 3 (3) (2018)
Marc A Sze, Patrick D Schloss
Erratum for Sze and Schloss, "Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors". mBio 9 (5) (2018)
Kaitlin J Flynn, Mack T Ruffin, D Kim Turgeon, Patrick D Schloss
Spatial Variation of the Native Colon Microbiota in Healthy Adults. Cancer prevention research (Philadelphia, Pa.) 11 (7) (2018)
Marc A Sze, Patrick D Schloss
Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors. mBio 9 (3) (2018)
Matthew K Doherty, Tao Ding, Charlie Koumpouras, Shannon E Telesco, Calixte Monast, Anuk Das, Carrie Brodmerkel, Patrick D Schloss
Fecal Microbiota Signatures Are Associated with Response to Ustekinumab Therapy among Crohn's Disease Patients. mBio 9 (2) (2018)
Patrick D Schloss
Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research. mBio 9 (3) (2018)
Sarah L Westcott, Patrick D Schloss
OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units. mSphere 2 (2) (2017)
Marc A Sze, Patrick D Schloss
Erratum for Sze and Schloss, "Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome". mBio 8 (6) (2017)
Patrick D Schloss, Mark Johnston, Arturo Casadevall
Erratum for Schloss et al., "Support Science by Publishing in Scientific Society Journals". mBio 8 (6) (2017)
Marc A Sze, Nielson T Baxter, Mack T Ruffin, Mary A M Rogers, Patrick D Schloss
Normalization of the microbiota in patients after treatment for colonic lesions. Microbiome 5 (1) (2017)
Patrick D Schloss, Mark Johnston, Arturo Casadevall
Support Science by Publishing in Scientific Society Journals. mBio 8 (5) (2017)
Patrick D Schloss
Preprinting Microbiology. mBio 8 (3) (2017)
Matthew L Jenior, Jhansi L Leslie, Vincent B Young, Patrick D Schloss
Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes. mSystems 2 (4) (2017)
Marc A Sze, Patrick D Schloss
Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome. mBio 7 (4) (2016)
Patrick D Schloss, Rene A Girard, Thomas Martin, Joshua Edwards, J Cameron Thrash
Status of the Archaeal and Bacterial Census: an Update. mBio 7 (3) (2016)
Kaitlin J Flynn, Nielson T Baxter, Patrick D Schloss
Metabolic and Community Synergy of Oral Bacteria in Colorectal Cancer. mSphere 1 (3) (2016)
Patrick D Schloss
Application of a Database-Independent Approach To Assess the Quality of Operational Taxonomic Unit Picking Methods. mSystems 1 (2) (2016)
Joseph P Zackular, Nielson T Baxter, Grace Y Chen, Patrick D Schloss
Manipulation of the Gut Microbiota Reveals Role in Colon Tumorigenesis. mSphere 1 (1) (2015)
Alyxandria M Schubert, Hamide Sinani, Patrick D Schloss
Antibiotic-Induced Alterations of the Murine Gut Microbiota and Subsequent Effects on Colonization Resistance against Clostridium difficile. mBio 6 (4) (2015)
Mark J Koenigsknecht, Casey M Theriot, Ingrid L Bergin, Cassie A Schumacher, Patrick D Schloss, Vincent B Young
Dynamics and establishment of Clostridium difficile infection in the murine gastrointestinal tract. Infection and immunity 83 (3) (2014)
Nielson T Baxter, Judy J Wan, Alyxandria M Schubert, Matthew L Jenior, Philip Myers, Patrick D Schloss
Intra- and interindividual variations mask interspecies variation in the microbiota of sympatric peromyscus populations. Applied and environmental microbiology 81 (1) (2014)