Pavel Banáš

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 22

Top Venues

Journal of chemical theory and computation

Journal of chemical information and modeling

The journal of physical chemistry letters

The journal of physical chemistry. B

Palacký University,Olomouc

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Palacký University,Olomouc Jan 07 2009

Czechia

Associate professor :: Department of Physical Chemistry

Publications

Petra Kührová, Vojtěch Mlýnský, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Correction to "Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes". Journal of chemical information and modeling 64 (13) (2024)
Barbora Knappeová, Vojtěch Mlýnský, Martin Pykal, Jiřı Šponer, Pavel Banáš, Michal Otyepka, Miroslav Krepl
Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid Duplexes. Journal of chemical theory and computation 20 (15) (2024)
Petra Kührová, Vojtěch Mlýnský, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Correction to "Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes". Journal of chemical information and modeling 64 (13) (2024)
Petra Kührová, Vojtěch Mlýnský, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Correction to "Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes". Journal of chemical information and modeling (2024)
Barbora Knappeová, Vojtěch Mlýnský, Martin Pykal, Jiřı Šponer, Pavel Banáš, Michal Otyepka, Miroslav Krepl
Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid Duplexes. Journal of chemical theory and computation 20 (15) (2024)
Barbora Knappeová, Vojtěch Mlýnský, Martin Pykal, Jiřı Šponer, Pavel Banáš, Michal Otyepka, Miroslav Krepl
Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid Duplexes. Journal of chemical theory and computation (2024)
Barbora Knappeová, Vojtěch Mlýnský, Martin Pykal, Jiřı Šponer, Pavel Banáš, Michal Otyepka, Miroslav Krepl
Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid Duplexes. Journal of chemical theory and computation 20 (15) (2024)
Petra Kührová, Vojtěch Mlýnský, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes. Journal of chemical information and modeling (2023)
Vojtěch Mlýnský, Petra Kührová, Petr Stadlbauer, Miroslav Krepl, Michal Otyepka, Pavel Banáš, Jiřı Šponer
Simple Adjustment of Intranucleotide Base-Phosphate Interaction in the OL3 AMBER Force Field Improves RNA Simulations. Journal of chemical theory and computation (2023)
Thorben Fröhlking, Vojtěch Mlýnský, Michal Janeček, Petra Kührová, Miroslav Krepl, Pavel Banáš, Jiřı Šponer, Giovanni Bussi
Automatic Learning of Hydrogen-Bond Fixes in the AMBER RNA Force Field. Journal of chemical theory and computation 18 (7) (2022)
Vojtěch Mlýnský, Michal Janeček, Petra Kührová, Thorben Fröhlking, Michal Otyepka, Giovanni Bussi, Pavel Banáš, Jiřı Šponer
Toward Convergence in Folding Simulations of RNA Tetraloops: Comparison of Enhanced Sampling Techniques and Effects of Force Field Modifications. Journal of chemical theory and computation 18 (4) (2022)
Michal Janeček, Petra Kührová, Vojtěch Mlýnský, Michal Otyepka, Jiřı Šponer, Pavel Banáš
W-RESP: Well-Restrained Electrostatic Potential-Derived Charges. Revisiting the Charge Derivation Model. Journal of chemical theory and computation 17 (6) (2021)
Klaudia Mráziková, Vojtěch Mlýnský, Petra Kührová, Pavlína Pokorná, Holger Kruse, Miroslav Krepl, Michal Otyepka, Pavel Banáš, Jiřı Šponer
UUCG RNA Tetraloop as a Formidable Force-Field Challenge for MD Simulations. Journal of chemical theory and computation 16 (12) (2020)
Vojtěch Mlýnský, Petra Kührová, Tomáš Kühr, Michal Otyepka, Giovanni Bussi, Pavel Banáš, Jiřı Šponer
Fine-Tuning of the AMBER RNA Force Field with a New Term Adjusting Interactions of Terminal Nucleotides. Journal of chemical theory and computation 16 (6) (2020)
Petra Kührová, Vojtěch Mlýnský, Marie Zgarbová, Miroslav Krepl, Giovanni Bussi, Robert B Best, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Correction to "Improving the Performance of the Amber RNA Force Field by Tuning the Hydrogen-Bonding Interactions". Journal of chemical theory and computation 16 (1) (2019)
Andrea Cesari, Sandro Bottaro, Kresten Lindorff-Larsen, Pavel Banáš, Jiřı Šponer, Giovanni Bussi
Fitting Corrections to an RNA Force Field Using Experimental Data. Journal of chemical theory and computation 15 (6) (2019)
Krishna C Suddala, Ian R Price, Shiba S Dandpat, Michal Janeček, Petra Kührová, Jiřı Šponer, Pavel Banáš, Ailong Ke, Nils G Walter
Local-to-global signal transduction at the core of a Mn2+ sensing riboswitch. Nature communications 10 (1) (2019)
Petra Kührová, Vojtěch Mlýnský, Marie Zgarbová, Miroslav Krepl, Giovanni Bussi, Robert B Best, Michal Otyepka, Jiřı Šponer, Pavel Banáš
Improving the Performance of the Amber RNA Force Field by Tuning the Hydrogen-Bonding Interactions. Journal of chemical theory and computation 15 (5) (2019)
Jiřı Šponer, Giovanni Bussi, Miroslav Krepl, Pavel Banáš, Sandro Bottaro, Richard A Cunha, Alejandro Gil-Ley, Giovanni Pinamonti, Simón Poblete, Petr Jurečka, Nils G Walter, Michal Otyepka
RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview. Chemical reviews 118 (8) (2018)
Holger Kruse, Pavel Banáš, Jiřı Šponer
Investigations of Stacked DNA Base-Pair Steps: Highly Accurate Stacking Interaction Energies, Energy Decomposition, and Many-Body Stacking Effects. Journal of chemical theory and computation 15 (1) (2018)
Sandro Bottaro, Pavel Banáš, Jiřı Šponer, Giovanni Bussi
Correction to "Free Energy Landscape of GAGA and UUCG RNA Tetraloops". The journal of physical chemistry letters 9 (7) (2018)
Vojtěch Mlýnský, Petra Kührová, Petr Jurečka, Jiří Šponer, Michal Otyepka, Pavel Banáš
Mapping the Chemical Space of the RNA Cleavage and Its Implications for Ribozyme Catalysis. The journal of physical chemistry. B 121 (48) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Pavel Banáš