Petr Stadlbauer

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 18

Top Topics

Molecular Dynamics Simulations

Trypanosoma Cruzi

Circulating Tumor

Top Venues

Journal of chemical information and modeling

Journal of chemical theory and computation

Angewandte Chemie (International ed. in English)

Chemical science

This page only lists publications with an associated author ORCID identifier.

Publications

Zhengyue Zhang, Vojtěch Mlýnský, Miroslav Krepl, Jiřı Šponer, Petr Stadlbauer
Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations. Journal of chemical information and modeling 64 (9) (2024)
Zhengyue Zhang, Vojtěch Mlýnský, Miroslav Krepl, Jiřı Šponer, Petr Stadlbauer
Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations. Journal of chemical information and modeling (2024)
Martin Gajarsky, Petr Stadlbauer, Jiřı Šponer, Anne Cucchiarini, Michaela Dobrovolna, Václav Brázda, Jean-Louis Mergny, Lukas Trantirek, Martina Lenarčič Živković
DNA Quadruplex Structure with a Unique Cation Dependency. Angewandte Chemie (International ed. in English) 63 (7) (2024)
Zhengyue Zhang, Vojtěch Mlýnský, Miroslav Krepl, Jiřı Šponer, Petr Stadlbauer
Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations. Journal of chemical information and modeling 64 (9) (2024)
Martin Gajarsky, Petr Stadlbauer, Jiřı Šponer, Anne Cucchiarini, Michaela Dobrovolna, Václav Brázda, Jean-Louis Mergny, Lukas Trantirek, Martina Lenarčič Živković
DNA Quadruplex Structure with a Unique Cation Dependency. Angewandte Chemie (International ed. in English) 63 (7) (2024)
Zhengyue Zhang, Vojtěch Mlýnský, Miroslav Krepl, Jiřı Šponer, Petr Stadlbauer
Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations. Journal of chemical information and modeling 64 (9) (2024)
Martin Gajarsky, Petr Stadlbauer, Jiřı Šponer, Anne Cucchiarini, Michaela Dobrovolna, Václav Brázda, Jean-Louis Mergny, Lukas Trantirek, Martina Lenarčič Živković
DNA Quadruplex Structure with a Unique Cation Dependency. Angewandte Chemie (International ed. in English) 63 (7) (2024)
Petr Stadlbauer, Vojtěch Mlýnský, Miroslav Krepl, Jiřı Šponer
Complexity of Guanine Quadruplex Unfolding Pathways Revealed by Atomistic Pulling Simulations. Journal of chemical information and modeling (2023)
Corinna L Kufner, Sarah J Crucilla, Dian Ding, Petr Stadlbauer, Jiřı Šponer, Jack W Szostak, Dimitar D Sasselov, Rafał Szabla
Photoinduced charge separation and DNA self-repair depend on sequence directionality and stacking pattern. Chemical science 15 (6) (2023)
Martin Gajarsky, Petr Stadlbauer, Jiřı Šponer, Anne Cucchiarini, Michaela Dobrovolna, Václav Brázda, Jean-Louis Mergny, Lukas Trantirek, Martina Lenarčič Živković
DNA Quadruplex Structure with a Unique Cation Dependency. Angewandte Chemie (International ed. in English) (2023)
Vojtěch Mlýnský, Petra Kührová, Petr Stadlbauer, Miroslav Krepl, Michal Otyepka, Pavel Banáš, Jiřı Šponer
Simple Adjustment of Intranucleotide Base-Phosphate Interaction in the OL3 AMBER Force Field Improves RNA Simulations. Journal of chemical theory and computation (2023)
Corinna L Kufner, Sarah J Crucilla, Dian Ding, Petr Stadlbauer, Jiřı Šponer, Jack W Szostak, Dimitar D Sasselov, Rafał Szabla
Photoinduced charge separation and DNA self-repair depend on sequence directionality and stacking pattern. Chemical science 15 (6) (2023)
Miroslav Krepl, Pavlína Pokorná, Vojtěch Mlýnský, Petr Stadlbauer, Jiří Šponer
Spontaneous binding of single-stranded RNAs to RRM proteins visualized by unbiased atomistic simulations with a rescaled RNA force field. Nucleic acids research (2022)
Petr Stadlbauer, Barira Islam, Michal Otyepka, Jielin Chen, David Monchaud, Jun Zhou, Jean-Louis Mergny, Jiřı Šponer
Insights into G-Quadruplex-Hemin Dynamics Using Atomistic Simulations: Implications for Reactivity and Folding. Journal of chemical theory and computation 17 (3) (2021)
Jielin Chen, Mingpan Cheng, Gilmar F Salgado, Petr Stadlbauer, Xiaobo Zhang, Samir Amrane, Aurore Guédin, Fangni He, Jiří Šponer, Huangxian Ju, Jean-Louis Mergny, Jun Zhou
The beginning and the end: flanking nucleotides induce a parallel G-quadruplex topology. Nucleic acids research 49 (16) (2021)
Barira Islam, Petr Stadlbauer, Michaela Vorlíčková, Jean-Louis Mergny, Michal Otyepka, Jiřı Šponer
Stability of Two-Quartet G-Quadruplexes and Their Dimers in Atomistic Simulations. Journal of chemical theory and computation 16 (6) (2020)
Marek Havrila, Petr Stadlbauer, Barira Islam, Michal Otyepka, Jiřı Šponer
Correction to "Effect of Monovalent Ion Parameters on Molecular Dynamics Simulations of G-Quadruplexes". Journal of chemical theory and computation 14 (3) (2018)
Barira Islam, Petr Stadlbauer, Miroslav Krepl, Marek Havrila, Shozeb M Haider, Jiřı Šponer
Structural Dynamics of Lateral and Diagonal Loops of Human Telomeric G-Quadruplexes in Extended MD Simulations. Journal of chemical theory and computation 14 (10) (2018)