Qirong Shen

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 59

Top Topics

Antimicrobial Resistance

Candida Albicans

Top Venues

Nature communications

The ISME journal

Environmental microbiology

This page only lists publications with an associated author ORCID identifier.

Publications

Sai Guo, Zixuan Jiao, Zhiguang Yan, Xinyue Yan, Xuhui Deng, Wu Xiong, Chengyuan Tao, Hongjun Liu, Jian Zhang, Qirong Shen, George A Kowalchuk, Stefan Geisen
Predatory protists reduce bacteria wilt disease incidence in tomato plants. Nature communications 15 (1) (2024)
Yunpeng Liu, Huihui Zhang, Jing Wang, Wenting Gao, Xiting Sun, Qin Xiong, Xia Shu, Youzhi Miao, Qirong Shen, Weibing Xun, Ruifu Zhang
Nonpathogenic Pseudomonas syringae derivatives and its metabolites trigger the plant "cry for help" response to assemble disease suppressing and growth promoting rhizomicrobiome. Nature communications 15 (1) (2024)
Sai Guo, Zixuan Jiao, Zhiguang Yan, Xinyue Yan, Xuhui Deng, Wu Xiong, Chengyuan Tao, Hongjun Liu, Jian Zhang, Qirong Shen, George A Kowalchuk, Stefan Geisen
Predatory protists reduce bacteria wilt disease incidence in tomato plants. Nature communications 15 (1) (2024)
Waseem Raza, Gaofei Jiang, Héctor J Aguado, Yishuo Huang, Zhong Wei, Qirong Shen, George A Kowalchuk, Alexandre Jousset
Microbe-induced phenotypic variation leads to overyielding in clonal plant populations. Nature ecology & evolution 8 (3) (2024)
Gaofei Jiang, Chen Liu, Wu Xiong, Qirong Shen, Zhong Wei
Protist predation selects for the soil resistome. The ISME journal 18 (1) (2024)
Qicheng Xu, Ling Li, Junjie Guo, Hanyue Guo, Manqiang Liu, Shiwei Guo, Yakov Kuzyakov, Ning Ling, Qirong Shen
Active microbial population dynamics and life strategies drive the enhanced carbon use efficiency in high-organic matter soils. mBio 15 (3) (2024)
Waseem Raza, Gaofei Jiang, Héctor J Aguado, Yishuo Huang, Zhong Wei, Qirong Shen, George A Kowalchuk, Alexandre Jousset
Microbe-induced phenotypic variation leads to overyielding in clonal plant populations. Nature ecology & evolution 8 (3) (2024)
Waseem Raza, Gaofei Jiang, Héctor J Aguado, Yishuo Huang, Zhong Wei, Qirong Shen, George A Kowalchuk, Alexandre Jousset
Microbe-induced phenotypic variation leads to overyielding in clonal plant populations. Nature ecology & evolution 8 (3) (2024)
Qicheng Xu, Ling Li, Junjie Guo, Hanyue Guo, Manqiang Liu, Shiwei Guo, Yakov Kuzyakov, Ning Ling, Qirong Shen
Active microbial population dynamics and life strategies drive the enhanced carbon use efficiency in high-organic matter soils. mBio 15 (3) (2024)
Gaofei Jiang, Yuling Zhang, Min Chen, Josep Ramoneda, Liangliang Han, Yu Shi, Rémi Peyraud, Yikui Wang, Xiaojun Shi, Xinping Chen, Wei Ding, Alexandre Jousset, Yasufumi Hikichi, Kouhei Ohnishi, Fang-Jie Zhao, Yangchun Xu, Qirong Shen, Francisco Dini-Andreote, Yong Zhang, Zhong Wei
Effects of plant tissue permeability on invasion and population bottlenecks of a phytopathogen. Nature communications 15 (1) (2024)
Qicheng Xu, Ling Li, Junjie Guo, Hanyue Guo, Manqiang Liu, Shiwei Guo, Yakov Kuzyakov, Ning Ling, Qirong Shen
Active microbial population dynamics and life strategies drive the enhanced carbon use efficiency in high-organic matter soils. mBio 15 (3) (2024)
Sai Guo, Zixuan Jiao, Zhiguang Yan, Xinyue Yan, Xuhui Deng, Wu Xiong, Chengyuan Tao, Hongjun Liu, Jian Zhang, Qirong Shen, George A Kowalchuk, Stefan Geisen
Predatory protists reduce bacteria wilt disease incidence in tomato plants. Nature communications 15 (1) (2024)
Yunpeng Liu, Huihui Zhang, Jing Wang, Wenting Gao, Xiting Sun, Qin Xiong, Xia Shu, Youzhi Miao, Qirong Shen, Weibing Xun, Ruifu Zhang
Nonpathogenic Pseudomonas syringae derivatives and its metabolites trigger the plant "cry for help" response to assemble disease suppressing and growth promoting rhizomicrobiome. Nature communications 15 (1) (2024)
Qicheng Xu, Ling Li, Junjie Guo, Hanyue Guo, Manqiang Liu, Shiwei Guo, Yakov Kuzyakov, Ning Ling, Qirong Shen
Active microbial population dynamics and life strategies drive the enhanced carbon use efficiency in high-organic matter soils. mBio (2024)
Gaofei Jiang, Yuling Zhang, Min Chen, Josep Ramoneda, Liangliang Han, Yu Shi, Rémi Peyraud, Yikui Wang, Xiaojun Shi, Xinping Chen, Wei Ding, Alexandre Jousset, Yasufumi Hikichi, Kouhei Ohnishi, Fang-Jie Zhao, Yangchun Xu, Qirong Shen, Francisco Dini-Andreote, Yong Zhang, Zhong Wei
Effects of plant tissue permeability on invasion and population bottlenecks of a phytopathogen. Nature communications 15 (1) (2024)
Gaofei Jiang, Yuling Zhang, Min Chen, Josep Ramoneda, Liangliang Han, Yu Shi, Rémi Peyraud, Yikui Wang, Xiaojun Shi, Xinping Chen, Wei Ding, Alexandre Jousset, Yasufumi Hikichi, Kouhei Ohnishi, Fang-Jie Zhao, Yangchun Xu, Qirong Shen, Francisco Dini-Andreote, Yong Zhang, Zhong Wei
Effects of plant tissue permeability on invasion and population bottlenecks of a phytopathogen. Nature communications 15 (1) (2024)
Waseem Raza, Gaofei Jiang, Héctor J Aguado, Yishuo Huang, Zhong Wei, Qirong Shen, George A Kowalchuk, Alexandre Jousset
Microbe-induced phenotypic variation leads to overyielding in clonal plant populations. Nature ecology & evolution (2024)
Xinrun Yang, Gaofei Jiang, Yaozhong Zhang, Ningqi Wang, Yuling Zhang, Xiaofang Wang, Fang-Jie Zhao, Yangchun Xu, Qirong Shen, Zhong Wei
MBPD: A multiple bacterial pathogen detection pipeline for One Health practices. iMeta 2 (1) (2023)
Tao Wen, Penghao Xie, Hongwei Liu, Ting Liu, Mengli Zhao, Shengdie Yang, Guoqing Niu, Lauren Hale, Brajesh K Singh, George A Kowalchuk, Qirong Shen, Jun Yuan
Tapping the rhizosphere metabolites for the prebiotic control of soil-borne bacterial wilt disease. Nature communications 14 (1) (2023)
Jianing Wang, Waseem Raza, Gaofei Jiang, Zhang Yi, Bryden Fields, Samuel Greenrod, Ville-Perti Friman, Alexandre Jousset, Qirong Shen, Zhong Wei
Bacterial volatile organic compounds attenuate pathogen virulence via evolutionary trade-offs. The ISME journal (2023)
Yang Ruan, Yakov Kuzyakov, Xiaoyu Liu, Xuhui Zhang, Qicheng Xu, Junjie Guo, Shiwei Guo, Qirong Shen, Yunfeng Yang, Ning Ling
Elevated temperature and CO 2 strongly affect the growth strategies of soil bacteria. Nature communications 14 (1) (2023)
Yuming Sun, Limin Gao, Xusheng Meng, Jian Huang, Junjie Guo, Xuan Zhou, Guohai Fu, Yang Xu, Leslie G Firbank, Min Wang, Ning Ling, Xumeng Feng, Qirong Shen, Shiwei Guo
Large-scale exploration of nitrogen utilization efficiency in Asia region for rice crop: Variation patterns and determinants. Global change biology (2023)
Peng He, Yuntao Zhang, Qirong Shen, Ning Ling, Zhibiao Nan
Microbial carbon use efficiency in different ecosystems: A meta-analysis based on a biogeochemical equilibrium model. Global change biology (2023)
Chengyuan Tao, Zhe Wang, Shanshan Liu, Nana Lv, Xuhui Deng, Wu Xiong, Zongzhuan Shen, Nan Zhang, Stefan Geisen, Jian Zhang, Qirong Shen, George A Kowalchuk
Additive fungal interactions drive biocontrol of Fusarium wilt disease. The New phytologist (2023)
Jianing Wang, Waseem Raza, Gaofei Jiang, Zhang Yi, Bryden Fields, Samuel Greenrod, Ville-Perti Friman, Alexandre Jousset, Qirong Shen, Zhong Wei
Bacterial volatile organic compounds attenuate pathogen virulence via evolutionary trade-offs. The ISME journal (2023)
Jianing Wang, Xiaofang Wang, Keming Yang, Chunxia Lu, Bryden Fields, Yangchun Xu, Qirong Shen, Zhong Wei, Ville-Petri Friman
Phage selection drives resistance-virulence trade-offs in Ralstonia solanacearum plant-pathogenic bacterium irrespective of the growth temperature. Evolution letters 8 (2) (2023)
Xinrun Yang, Gaofei Jiang, Yaozhong Zhang, Ningqi Wang, Yuling Zhang, Xiaofang Wang, Fang-Jie Zhao, Yangchun Xu, Qirong Shen, Zhong Wei
MBPD: A multiple bacterial pathogen detection pipeline for One Health practices. iMeta 2 (1) (2023)
Yang Ruan, Yakov Kuzyakov, Xiaoyu Liu, Xuhui Zhang, Qicheng Xu, Junjie Guo, Shiwei Guo, Qirong Shen, Yunfeng Yang, Ning Ling
Elevated temperature and CO 2 strongly affect the growth strategies of soil bacteria. Nature communications 14 (1) (2023)
Jianing Wang, Waseem Raza, Gaofei Jiang, Zhang Yi, Bryden Fields, Samuel Greenrod, Ville-Perti Friman, Alexandre Jousset, Qirong Shen, Zhong Wei
Bacterial volatile organic compounds attenuate pathogen virulence via evolutionary trade-offs. The ISME journal (2023)
Jianing Wang, Waseem Raza, Gaofei Jiang, Zhang Yi, Bryden Fields, Samuel Greenrod, Ville-Perti Friman, Alexandre Jousset, Qirong Shen, Zhong Wei
Bacterial volatile organic compounds attenuate pathogen virulence via evolutionary trade-offs. The ISME journal 17 (3) (2023)
Jianing Wang, Xiaofang Wang, Keming Yang, Chunxia Lu, Bryden Fields, Yangchun Xu, Qirong Shen, Zhong Wei, Ville-Petri Friman
Phage selection drives resistance-virulence trade-offs in Ralstonia solanacearum plant-pathogenic bacterium irrespective of the growth temperature. Evolution letters 8 (2) (2023)
Yang Ruan, Yakov Kuzyakov, Xiaoyu Liu, Xuhui Zhang, Qicheng Xu, Junjie Guo, Shiwei Guo, Qirong Shen, Yunfeng Yang, Ning Ling
Elevated temperature and CO 2 strongly affect the growth strategies of soil bacteria. Nature communications 14 (1) (2023)
Jianing Wang, Waseem Raza, Gaofei Jiang, Zhang Yi, Bryden Fields, Samuel Greenrod, Ville-Perti Friman, Alexandre Jousset, Qirong Shen, Zhong Wei
Bacterial volatile organic compounds attenuate pathogen virulence via evolutionary trade-offs. The ISME journal 17 (3) (2023)
Yang Ruan, Yakov Kuzyakov, Xiaoyu Liu, Xuhui Zhang, Qicheng Xu, Junjie Guo, Shiwei Guo, Qirong Shen, Yunfeng Yang, Ning Ling
Elevated temperature and CO 2 strongly affect the growth strategies of soil bacteria. Nature communications 14 (1) (2023)
Yunpeng Liu, Xia Shu, Lin Chen, Huihui Zhang, Haichao Feng, Xiting Sun, Qin Xiong, Guangqi Li, Weibing Xun, Zhihui Xu, Nan Zhang, Corné M J Pieterse, Qirong Shen, Ruifu Zhang
Plant commensal type VII secretion system causes iron leakage from roots to promote colonization. Nature microbiology (2023)
Shanshan Liu, Chengyuan Tao, Lingyin Zhang, Zhe Wang, Wu Xiong, Dandan Xiang, Ou Sheng, Jiabao Wang, Jian Zhang, Zongzhuan Shen, Chunyu Li, Qirong Shen, George A Kowalchuk
Plant pathogen resistance is mediated by recruitment of specific rhizosphere fungi. The ISME journal (2023)
Xuhui Deng, Na Zhang, Yuchan Li, Chengzhi Zhu, Baoyuan Qu, Hongjun Liu, Jian Zhang, Yang Bai, Qirong Shen, Joana Falcao Salles
Bio-organic soil amendment promotes the suppression of Ralstonia solanacearum by inducing changes in the functionality and composition of rhizosphere bacterial communities. The New phytologist 235 (4) (2022)
Yong Zhang, Hisae Tateishi-Karimata, Tamaki Endoh, Qiongli Jin, Kexin Li, Xiaoru Fan, Yingjun Ma, Limin Gao, Haiyan Lu, Zhi-Ye Wang, Art E Cho, Xue-Feng Yao, Chun-Ming Liu, Naoki Sugimoto, Shiwei Guo, Xiangdong Fu, Qirong Shen, Guo Hua Xu, Luis Rafael Herrera-Estrella, Xiaorong Fan
High-temperature adaptation of an OsNRT2.3 allele is thermoregulated by small RNAs. Science advances 8 (47) (2022)
Zhonghua Wang, Tianjie Yang, Xinlan Mei, Ningqi Wang, Xiaogang Li, Qingsong Yang, Caixia Dong, Gaofei Jiang, Jing Lin, Yangchun Xu, Qirong Shen, Alexandre Jousset, Samiran Banerjee
Bio-Organic Fertilizer Promotes Pear Yield by Shaping the Rhizosphere Microbiome Composition and Functions. Microbiology spectrum (2022)
Sai Guo, Chengyuan Tao, Alexandre Jousset, Wu Xiong, Zhe Wang, Zongzhuan Shen, Beibei Wang, Zhihui Xu, Zhilei Gao, Shanshan Liu, Jian Zhang, Yunze Ruan, Qirong Shen, George A Kowalchuk, Stefan Geisen
Trophic interactions between predatory protists and pathogen-suppressive bacteria impact plant health. The ISME journal 16 (8) (2022)
Yian Gu, Samiran Banerjee, Francisco Dini-Andreote, Yangchun Xu, Qirong Shen, Alexandre Jousset, Zhong Wei
Small changes in rhizosphere microbiome composition predict disease outcomes earlier than pathogen density variations. The ISME journal 16 (10) (2022)
Zongzhuan Shen, Linda S Thomashow, Yannan Ou, Chengyuan Tao, Jiabao Wang, Wu Xiong, Hongjun Liu, Rong Li, Qirong Shen, George A Kowalchuk
Shared Core Microbiome and Functionality of Key Taxa Suppressive to Banana Fusarium Wilt. Research (Washington, D.C.) 2022 (2022)
Zheng Zhao, Feng M Cai, Renwei Gao, Mingyue Ding, Siqi Jiang, Peijie Chen, Guan Pang, Komal Chenthamara, Qirong Shen, Günseli Bayram Akcapinar, Irina S Druzhinina
At least three families of hyphosphere small secreted cysteine-rich proteins can optimize surface properties to a moderately hydrophilic state suitable for fungal attachment. Environmental microbiology 23 (10) (2021)
Xuhui Deng, Na Zhang, Zongzhuan Shen, Chengzhi Zhu, Hongjun Liu, Zhihui Xu, Jian Zhang, Qirong Shen, Joana Falcao Salles
Soil microbiome manipulation triggers direct and possible indirect suppression against Ralstonia solanacearum and Fusarium oxysporum. NPJ biofilms and microbiomes 7 (1) (2021)
Min Wang, Ruirui Wang, Luis Alejandro Jose Mur, Jianyun Ruan, Qirong Shen, Shiwei Guo
Functions of silicon in plant drought stress responses. Horticulture research 8 (1) (2021)
Maoxing Zhang, Yin Wang, Xi Chen, Feiyun Xu, Ming Ding, Wenxiu Ye, Yuya Kawai, Yosuke Toda, Yuki Hayashi, Takamasa Suzuki, Houqing Zeng, Liang Xiao, Xin Xiao, Jin Xu, Shiwei Guo, Feng Yan, Qirong Shen, Guo Hua Xu, Toshinori Kinoshita, Yiyong Zhu
Plasma membrane H+-ATPase overexpression increases rice yield via simultaneous enhancement of nutrient uptake and photosynthesis. Nature communications 12 (1) (2021)
Feng M Cai, Zheng Zhao, Renwei Gao, Peijie Chen, Mingyue Ding, Siqi Jiang, Zhifei Fu, Pingyong Xu, Komal Chenthamara, Qirong Shen, Günseli Bayram Akcapinar, Irina S Druzhinina
The pleiotropic functions of intracellular hydrophobins in aerial hyphae and fungal spores. PLoS genetics 17 (11) (2021)
Jie Hu, Tianjie Yang, Ville-Perti Friman, George A Kowalchuk, Yann Hautier, Mei Li, Zhong Wei, Yangchun Xu, Qirong Shen, Alexandre Jousset
Introduction of probiotic bacterial consortia promotes plant growth via impacts on the resident rhizosphere microbiome. Proceedings. Biological sciences 288 (1960) (2021)
Yifan Li, Tingting Sun, Degang Guo, Jia Gao, Jian Zhang, Feng Cai, Reinhard Fischer, Qirong Shen, Zhenzhong Yu
Comprehensive analysis of the regulatory network of blue-light-regulated conidiation and hydrophobin production in Trichoderma guizhouense. Environmental microbiology 23 (10) (2021)
Hong Zhu, Jian Zhang, Qi Gao, Guan Pang, Tingting Sun, Jian Zhang, Zhenzhong Yu, Qirong Shen
A new atypical short-chain dehydrogenase is required for interfungal combat and conidiation in Trichoderma guizhouense. Environmental microbiology 23 (10) (2021)
Youzhi Miao, Yanwei Xia, Yanqiong Kong, Han Zhu, Huiling Mei, Pan Li, Haichao Feng, Weibing Xun, Zhihui Xu, Nan Zhang, Dongyang Liu, Qirong Shen, Ruifu Zhang
Overcoming diverse homologous recombinations and single chimeric guide RNA competitive inhibition enhances Cas9-based cyclical multiple genes coediting in filamentous fungi. Environmental microbiology 23 (6) (2021)
Xinli Sun, Zhihui Xu, Jiyu Xie, Viktor Hesselberg-Thomsen, Taimeng Tan, Daoyue Zheng, Mikael Lenz Strube, Anna Dragoš, Qirong Shen, Ruifu Zhang, Ákos T Kovács
Bacillus velezensis stimulates resident rhizosphere Pseudomonas stutzeri for plant health through metabolic interactions. The ISME journal (2021)
Tao Wen, Jun Yuan, Xiaoming He, Yue Lin, Qiwei Huang, Qirong Shen
Enrichment of beneficial cucumber rhizosphere microbes mediated by organic acid secretion. Horticulture research 7 (2020)
Guan Pang, Tingting Sun, Zhenzhong Yu, Tao Yuan, Wei Liu, Hong Zhu, Qi Gao, Dongqing Yang, Christian P Kubicek, Jian Zhang, Qirong Shen
Azaphilones biosynthesis complements the defence mechanism of Trichoderma guizhouense against oxidative stress. Environmental microbiology 22 (11) (2020)
Feng M Cai, Renwei Gao, Zheng Zhao, Mingyue Ding, Siqi Jiang, Civan Yagtu, Hong Zhu, Jian Zhang, Thomas Ebner, Michael Mayrhofer-Reinhartshuber, Philipp Kainz, Komal Chenthamara, Günseli Bayram Akcapinar, Qirong Shen, Irina S Druzhinina
Evolutionary compromises in fungal fitness: hydrophobins can hinder the adverse dispersal of conidiospores and challenge their survival. The ISME journal 14 (10) (2020)
Chengyuan Tao, Rong Li, Wu Xiong, Zongzhuan Shen, Shanshan Liu, Beibei Wang, Yunze Ruan, Stefan Geisen, Qirong Shen, George A Kowalchuk
Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression. Microbiome 8 (1) (2020)
Tao Wen, Jun Yuan, Xiaoming He, Yue Lin, Qiwei Huang, Qirong Shen
Enrichment of beneficial cucumber rhizosphere microbes mediated by organic acid secretion. Horticulture research 7 (1) (2020)
Jun Yuan, Tao Wen, He Zhang, Mengli Zhao, C Ryan Penton, Linda S Thomashow, Qirong Shen
Predicting disease occurrence with high accuracy based on soil macroecological patterns of Fusarium wilt. The ISME journal 14 (12) (2020)
Dandan Wang, Zhihui Xu, Guishan Zhang, Liming Xia, Xiaoyan Dong, Qing Li, Mark R Liles, Jiahui Shao, Qirong Shen, Ruifu Zhang
A genomic island in a plant beneficial rhizobacterium encodes novel antimicrobial fatty acids and a self-protection shield to enhance its competition. Environmental microbiology (2019)