R Dustin Schaeffer

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 20

Top Venues

Protein science : a publication of the Protein Society

PLoS computational biology

Proteins

Proceedings of the National Academy of Sciences of the United States of America

University of Texas Southwestern Medical Center at Dallas

Unversity of Washington (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Texas Southwestern Medical Center at Dallas Oct 01 2010 - Sep 01 2016

United States

Postdoctoral Fellow :: Biophysics

Education History

Unversity of Washington Sep 01 2003 - Jun 20 2010

United States

PHD :: Biochemistry

UC San Diego Sep 01 1999 - Jun 10 2003

United States

BSC :: Biology

Publications

R Dustin Schaeffer, Jing Zhang, Kirill E Medvedev, Lisa N Kinch, Qian Cong, Nick V Grishin
ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2. PLoS computational biology 20 (2) (2024)
R Dustin Schaeffer, Jing Zhang, Kirill E Medvedev, Lisa N Kinch, Qian Cong, Nick V Grishin
ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2. PLoS computational biology 20 (2) (2024)
R Dustin Schaeffer, Jing Zhang, Kirill E Medvedev, Lisa N Kinch, Qian Cong, Nick V Grishin
ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2. PLoS computational biology 20 (2) (2024)
R Dustin Schaeffer, Jing Zhang, Kirill E Medvedev, Lisa N Kinch, Qian Cong, Nick V Grishin
ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2. PLoS computational biology 20 (2) (2024)
Kirill E Medvedev, R Dustin Schaeffer, Nick V Grishin
DrugDomain: The evolutionary context of drugs and small molecules bound to domains. Protein science : a publication of the Protein Society 33 (8) (2024)
Kirill E Medvedev, R Dustin Schaeffer, Nick V Grishin
DrugDomain: The evolutionary context of drugs and small molecules bound to domains. Protein science : a publication of the Protein Society 33 (8) (2024)
Jing Zhang, R Dustin Schaeffer, Jesse Durham, Nick V Grishin, Nick V Grishin
DPAM: A domain parser for AlphaFold models. Protein science : a publication of the Protein Society 32 (2) (2023)
Jing Zhang, R Dustin Schaeffer, Jesse Durham, Nick V Grishin, Nick V Grishin
DPAM: A domain parser for AlphaFold models. Protein science : a publication of the Protein Society 32 (2) (2023)
Jing Zhang, R Dustin Schaeffer, Jesse Durham, Nick V Grishin, Nick V Grishin
DPAM: A domain parser for AlphaFold models. Protein science : a publication of the Protein Society 32 (2) (2023)
R Dustin Schaeffer, Jing Zhang, Lisa N Kinch, Jimin Pei, Nick V Grishin, Nick V Grishin
Classification of domains in predicted structures of the human proteome. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
R Dustin Schaeffer, Jing Zhang, Lisa N Kinch, Jimin Pei, Nick V Grishin, Nick V Grishin
Classification of domains in predicted structures of the human proteome. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
Kirill E Medvedev, R Dustin Schaeffer, Jimin Pei, Nick V Grishin
Pathogenic mutation hotspots in protein kinase domain structure. Protein science : a publication of the Protein Society (2023)
Jing Zhang, R Dustin Schaeffer, Jesse Durham, Nick V Grishin, Nick V Grishin
DPAM: A Domain Parser for AlphaFold Models. Protein science : a publication of the Protein Society (2022)
Jing Zhang, R Dustin Schaeffer, Jesse Durham, Nick V Grishin, Nick V Grishin
DPAM: A Domain Parser for AlphaFold Models. Protein science : a publication of the Protein Society (2022)
Lisa N Kinch, Jimin Pei, Andriy Kryshtafovych, R Dustin Schaeffer, Nick V Grishin
Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14). Proteins 89 (12) (2021)
Minkyung Baek, Frank Dimaio, David Baker, Justas Dauparas, Sergey Ovchinnikov, Gyu Rie Lee, Jue Wang, Nick V Grishin, Lisa N Kinch, R Dustin Schaeffer, Claudia Millán, Hahnbeom Park, Carson Adams, Caleb R Glassman, Andy DeGiovanni, Jose Henrique Pereira, Andria V Rodrigues, Alberdina A van Dijk, Ana C Ebrecht, Diederik Johannes Opperman, Theo Sagmeister, Christoph Buhlheller, Tea Pavkov-Keller, Manoj K Rathinaswamy, Udit Dalwadi, Calvin K Yip, John E Burke, K Christopher Garcia, Nick V Grishin, Paul D Adams, Randy J Read, Julien S Baker
Accurate prediction of protein structures and interactions using a three-track neural network. Science (New York, N.Y.) 373 (6557) (2021)
Lisa N Kinch, R Dustin Schaeffer, Andriy Kryshtafovych, Nick V Grishin
Target classification in the 14th round of the critical assessment of protein structure prediction (CASP14). Proteins 89 (12) (2021)
R Dustin Schaeffer, Lisa N Kinch, Andriy Kryshtafovych, Nick V Grishin
Assessment of domain interactions in the fourteenth round of the Critical Assessment of Structure Prediction (CASP14). Proteins 89 (12) (2021)
R Dustin Schaeffer, Lisa N Kinch, Jimin Pei, Kirill E Medvedev, Nick V Grishin
Completeness and Consistency in Structural Domain Classifications. ACS omega 6 (24) (2021)
R Dustin Schaeffer, Lisa N Kinch, Yuxing Liao, Nick V Grishin
Classification of proteins with shared motifs and internal repeats in the ECOD database. Protein science : a publication of the Protein Society 25 (7) (2016)

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Publication Activity (10 Years)

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R Dustin Schaeffer