Roger Stephan

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 62

Top Venues

Microbiology resource announcements

Microorganisms

Foods (Basel, Switzerland)

Methods and protocols

University of Zurich

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Zurich Mar 01 2003

Switzerland

Director :: Institute for Food Safety and Hygiene, Vetsuisse Faculty

Publications

Francis Muchaamba, Roger Stephan
A Comprehensive Methodology for Microbial Strain Typing Using Fourier-Transform Infrared Spectroscopy. Methods and protocols 7 (3) (2024)
Francis Muchaamba, Roger Stephan
A Comprehensive Methodology for Microbial Strain Typing Using Fourier-Transform Infrared Spectroscopy. Methods and protocols 7 (3) (2024)
Jan Bernd Hinrichs, Antonia Kreitlow, Madeleine Plötz, Ulrich Schotte, Paul Becher, Nele Gremmel, Roger Stephan, Nicole Kemper, Amir Abdulmawjood
Development of a Sensitive and Specific Quantitative RT-qPCR Method for the Detection of Hepatitis E Virus Genotype 3 in Porcine Liver and Foodstuff. Foods (Basel, Switzerland) 13 (3) (2024)
Jan Bernd Hinrichs, Antonia Kreitlow, Madeleine Plötz, Ulrich Schotte, Paul Becher, Nele Gremmel, Roger Stephan, Nicole Kemper, Amir Abdulmawjood
Development of a Sensitive and Specific Quantitative RT-qPCR Method for the Detection of Hepatitis E Virus Genotype 3 in Porcine Liver and Foodstuff. Foods (Basel, Switzerland) 13 (3) (2024)
Magdalena Nüesch-Inderbinen, Michael Biggel, Marianne Wehrli, Andreas Hans Fischer, Roger Stephan
Complete genome sequence of the linezolid-resistant clinical Enterococcus faecalis N23-3408 linked to a livestock lineage in Switzerland. Microbiology resource announcements 13 (6) (2024)
Magdalena Nüesch-Inderbinen, Michael Biggel, Marianne Wehrli, Andreas Hans Fischer, Roger Stephan
Complete genome sequence of the linezolid-resistant clinical Enterococcus faecalis N23-3408 linked to a livestock lineage in Switzerland. Microbiology resource announcements 13 (6) (2024)
Magdalena Nüesch-Inderbinen, Michael Biggel, Marianne Wehrli, Andreas Hans Fischer, Roger Stephan
Complete genome sequence of the linezolid-resistant clinical Enterococcus faecalis N23-3408 linked to a livestock lineage in Switzerland. Microbiology resource announcements (2024)
Magdalena Nüesch-Inderbinen, Michael Biggel, Marianne Wehrli, Andreas Hans Fischer, Roger Stephan
Complete genome sequence of the linezolid-resistant clinical Enterococcus faecalis N23-3408 linked to a livestock lineage in Switzerland. Microbiology resource announcements 13 (6) (2024)
Francis Muchaamba, Roger Stephan
A Comprehensive Methodology for Microbial Strain Typing Using Fourier-Transform Infrared Spectroscopy. Methods and protocols 7 (3) (2024)
Michael Biggel, Karen Barmettler, Andrea Treier, Francis Muchaamba, Roger Stephan
Draft Genome Sequences of Two Escherichia albertii Isolates Collected from Healthy Pets in Switzerland. Microbiology resource announcements 12 (3) (2023)
Simone Scherrer, Sarah Schmitt, Fenja Rademacher, Peter Kuhnert, Giovanni Ghielmetti, Sophie Peterhans, Roger Stephan
Development of a new multiplex quantitative PCR for the detection of Glaesserella parasuis, Mycoplasma hyorhinis, and Mycoplasma hyosynoviae. MicrobiologyOpen 12 (3) (2023)
Simone Scherrer, Sarah Schmitt, Fenja Rademacher, Peter Kuhnert, Giovanni Ghielmetti, Sophie Peterhans, Roger Stephan
Development of a new multiplex quantitative PCR for the detection of Glaesserella parasuis, Mycoplasma hyorhinis, and Mycoplasma hyosynoviae. MicrobiologyOpen 12 (3) (2023)
Simone Scherrer, Sarah Schmitt, Fenja Rademacher, Peter Kuhnert, Giovanni Ghielmetti, Sophie Peterhans, Roger Stephan
Development of a new multiplex quantitative PCR for the detection of Glaesserella parasuis, Mycoplasma hyorhinis, and Mycoplasma hyosynoviae. MicrobiologyOpen 12 (3) (2023)
Michael Biggel, Karen Barmettler, Andrea Treier, Francis Muchaamba, Roger Stephan
Draft Genome Sequences of Four Escherichia albertii Isolates from Hunted Wild Boars in Switzerland. Microbiology resource announcements (2023)
Lucien Kelbert, Marc J A Stevens, Jule A Horlbog, Michael Biggel, Roger Stephan
Completely assembled genome sequence of the florfenicol-resistant Enterococcus faecalis strain 90_2023 isolated from a raw sausage imported from Italy to Switzerland. Microbiology resource announcements (2023)
Longcheng Guo, Joseph M Wambui, Chenhui Wang, Francis Muchaamba, Maria Victoria Fernandez-Cantos, Jaap Broos, Taurai Tasara, Oscar Paul Kuipers, Roger Stephan
Cesin, a short natural variant of nisin, displays potent antimicrobial activity against major pathogens despite lacking two C-terminal macrocycles. Microbiology spectrum (2023)
Michael Biggel, Julia Lienhard, Roger Stephan
Draft Genome Sequence of Pseudomonas carnis Strain 23-145, Causing Blue Discolorations on Rabbit Carcasses. Microbiology resource announcements (2023)
Michael Biggel, Karen Barmettler, Andrea Treier, Francis Muchaamba, Roger Stephan
Draft Genome Sequences of Two Escherichia albertii Isolates Collected from Healthy Pets in Switzerland. Microbiology resource announcements (2023)
Michael Biggel, Sara Boss, Theethawat Uea-Anuwong, Kittitat Lugsomya, Ioannis Magouras, Roger Stephan
Complete Genome Sequence of the Extensively Drug-Resistant Extended-Spectrum β-Lactamase-Producing Proteus mirabilis Isolate HK294, Obtained from Poultry Feces in Hong Kong. Microbiology resource announcements (2023)
Michael Biggel, Sophia Johler, Tim Roloff, Sarah Tschudin-Sutter, Stefano Bassetti, Martin Siegemund, Adrian Egli, Roger Stephan, Helena M B Seth-Smith
PorinPredict: In Silico Identification of OprD Loss from WGS Data for Improved Genotype-Phenotype Predictions of P. aeruginosa Carbapenem Resistance. Microbiology spectrum (2023)
Sven Halbedel, Ida Sperle, Raskit Lachmann, Sylvia Kleta, Martin A Fischer, Sabrina Wamp, Alexandra Holzer, Stefanie Lüth, Larissa Murr, Christin Freitag, Laura Espenhain, Roger Stephan, Ariane Pietzka, Susanne Schjørring, Guido Bloemberg, Mareike Wenning, Sascha Al Dahouk, Hendrik Wilking, Antje Flieger
Large Multicountry Outbreak of Invasive Listeriosis by a Listeria monocytogenes ST394 Clone Linked to Smoked Rainbow Trout, 2020 to 2021. Microbiology spectrum (2023)
Sara Boss, Roger Stephan, Jule Anna Horlbog, Ioannis Magouras, Violaine Albane Colon, Kittitat Lugsomya, Marc J A Stevens, Magdalena Nüesch-Inderbinen
Serotypes, Antimicrobial Resistance Profiles, and Virulence Factors of Salmonella Isolates in Chinese Edible Frogs ( Hoplobatrachus rugulosus ) Collected from Wet Markets in Hong Kong. Foods (Basel, Switzerland) 12 (11) (2023)
Michael Biggel, Karen Barmettler, Andrea Treier, Francis Muchaamba, Roger Stephan
Draft Genome Sequences of Two Escherichia albertii Isolates Collected from Healthy Pets in Switzerland. Microbiology resource announcements 12 (3) (2023)
Hyein Jang, Athmanya Eshwar, Angelika Lehner, Jayanthi Gangiredla, Isha R Patel, Junia Jean-Gilles Beaubrun, Hannah R Chase, Flavia Negrete, Samantha Finkelstein, Leah M Weinstein, Katie Ko, Nicole Addy, Laura Ewing, Jungha Woo, Youyoung Lee, Kunho Seo, Ziad Jaradat, Shabarinath Srikumar, Séamus Fanning, Roger Stephan, Ben D Tall, Gopal R Gopinath
Characterization of Cronobacter sakazakii Strains Originating from Plant-Origin Foods Using Comparative Genomic Analyses and Zebrafish Infectivity Studies. Microorganisms 10 (7) (2022)
Simone Scherrer, Fenja Rademacher, Roger Stephan, Sophie Peterhans
Identification of Glaesserella parasuis and Differentiation of Its 15 Serovars Using High-Resolution Melting Assays. Pathogens (Basel, Switzerland) 11 (7) (2022)
Michael Biggel, Katrin Zurfluh, Sarah Hoehn, Kira Schmitt, Andrea Frei, Christoph Jans, Roger Stephan
Complete Genome Sequence of Hafnia paralvei Isolate AVS0177, Harboring mcr-9 on a Plasmid. Microbiology resource announcements 11 (1) (2022)
Chiara Pagamici, Roger Stephan
Pregnancy in Slaughtered Lambs and Sheep-A Cross-Sectional Study in Three Abattoirs in Switzerland. Animals : an open access journal from MDPI 12 (10) (2022)
Michael Biggel, Katrin Zurfluh, Sarah Hoehn, Kira Schmitt, Andrea Frei, Christoph Jans, Roger Stephan
Complete Genome Sequence of Colistin-Resistant, mcr-10 -Harboring, Enterobacter cloacae Isolate AVS0889, Recovered from River Water in Switzerland. Microbiology resource announcements 11 (5) (2022)
Kira Schmitt, Michael Biggel, Roger Stephan, Barbara Willi
Massive Spread of OXA-48 Carbapenemase-Producing Enterobacteriaceae in the Environment of a Swiss Companion Animal Clinic. Antibiotics (Basel, Switzerland) 11 (2) (2022)
Gopal R Gopinath, Hyein Jang, Junia Jean-Gilles Beaubrun, Jayanthi Gangiredla, Mark K Mammel, Andrea Müller, Sandeep Tamber, Isha R Patel, Laura Ewing, Leah M Weinstein, Caroline Z Wang, Samantha Finkelstein, Flavia Negrete, Tim Muruvanda, Marc Allard, Donald C Sockett, Franco Pagotto, Ben D Tall, Roger Stephan
Phylogenomic Analysis of Salmonella &nbsp; enterica subsp. enterica Serovar Bovismorbificans from Clinical and Food Samples Using Whole Genome Wide Core Genes and kmer Binning Methods to Identify Two Distinct Polyphyletic Genome Pathotypes. Microorganisms 10 (6) (2022)
Andrea Treier, Roger Stephan, Marc J A Stevens, Nicole Cernela, Magdalena Nüesch-Inderbinen
High Occurrence of Shiga Toxin-Producing Escherichia coli in Raw Meat-Based Diets for Companion Animals-A Public Health Issue. Microorganisms 9 (8) (2021)
Alessia Maria Giuseppina Bassi, Janine Carmen Steiner, Roger Stephan, Magdalena Nüesch-Inderbinen
Seroprevalence of Toxoplasma gondii and Salmonella in Hunted Wild Boars from Two Different Regions in Switzerland. Animals : an open access journal from MDPI 11 (8) (2021)
Francis Muchaamba, Roger Stephan, Taurai Tasara
Listeria monocytogenes Cold Shock Proteins: Small Proteins with A Huge Impact. Microorganisms 9 (5) (2021)
Yu Cao, Katherine Dever, Sathesh Kumar Sivasankaran, Scott V Nguyen, Guerrino Macori, Ankita Naithani, Gopal R Gopinath, Ben Tall, Angelika Lehner, Roger Stephan, Shabarinath Srikumar, Séamus Fanning
Alterations in the Transcriptional Landscape Allow Differential Desiccation Tolerance in Clinical Cronobacter sakazakii. Applied and environmental microbiology 87 (24) (2021)
Kira Schmitt, Stefan P Kuster, Katrin Zurfluh, Rahel S Jud, Jane E Sykes, Roger Stephan, Barbara Willi
Transmission Chains of Extended-Spectrum Beta-Lactamase-Producing Enterobacteriaceae at the Companion Animal Veterinary Clinic-Household Interface. Antibiotics (Basel, Switzerland) 10 (2) (2021)
Isabelle Vonlanthen-Specker, Roger Stephan, Xaver Sidler, Dominik Moor, Cornel Fraefel, Claudia Bachofen
Genetic Diversity of Hepatitis E Virus Type 3 in Switzerland-From Stable to Table. Animals : an open access journal from MDPI 11 (11) (2021)
Jule Anna Horlbog, Roger Stephan, Marc J A Stevens, Gudrun Overesch, Sonja Kittl, Maira Napoleoni, Valentina Silenzi, Magdalena Nüesch-Inderbinen, Sarah Albini
Feedborne Salmonella enterica Serovar Jerusalem Outbreak in Different Organic Poultry Flocks in Switzerland and Italy Linked to Soya Expeller. Microorganisms 9 (7) (2021)
Michael Biggel, Magdalena Nüesch-Inderbinen, Christoph Jans, Marc J A Stevens, Roger Stephan
Genetic Context of optrA and poxtA in Florfenicol-Resistant Enterococci Isolated from Flowing Surface Water in Switzerland. Antimicrobial agents and chemotherapy 65 (10) (2021)
Kira Schmitt, Anna Barbara Emilia Zimmermann, Roger Stephan, Barbara Willi
Hand Hygiene Evaluation Using Two Different Evaluation Tools and Hand Contamination of Veterinary Healthcare Workers in a Swiss Companion Animal Clinic. Veterinary sciences 8 (11) (2021)
Valerie Wist, Marina Morach, Marianne Schneeberger, Nicole Cernela, Marc J A Stevens, Katrin Zurfluh, Roger Stephan, Magdalena Nüesch-Inderbinen
Correction: Wist et al. Phenotypic and Genotypic Traits of Vancomycin-Resistant Enterococci from Healthy Food-Producing Animals. Microorganisms 2020, 8, 261. Microorganisms 9 (4) (2021)
Jessica Schlicher, Sarah Schmitt, Marc J A Stevens, Roger Stephan, Giovanni Ghielmetti
Molecular Characterization of Corynebacterium pseudotuberculosis Isolated over a 15-Year Period in Switzerland. Veterinary sciences 8 (8) (2021)
Marc J A Stevens, Nicole Cernela, Andrea Müller, Magdalena Nüesch-Inderbinen, Roger Stephan
Draft Genome Sequences of 19 Clinical stx-Harboring Escherichia coli O80:H2 Strains. Microbiology resource announcements 10 (11) (2021)
Trinad Chakraborty, Mustafa Sadek, Yancheng Yao, Can Imirzalioglu, Roger Stephan, Laurent Poirel, Patrice Nordmann
Cross-Border Emergence of Escherichia coli Producing the Carbapenemase NDM-5 in Switzerland and Germany. Journal of clinical microbiology 59 (3) (2021)
Joseph M Wambui, Nicole Cernela, Marc J A Stevens, Sabrina Corti, Roger Stephan
Draft Genome Sequences of Two Phylogenetically Distinct Clostridium gasigenes Strains, CM001 and CM004, Isolated from Chilled Vacuum-Packed Meat. Microbiology resource announcements 9 (42) (2020)
Mirjami Mattila, Panu Somervuo, Hannu Korkeala, Roger Stephan, Taurai Tasara
Transcriptomic and Phenotypic Analyses of the Sigma B-Dependent Characteristics and the Synergism between Sigma B and Sigma L in Listeria monocytogenes EGD-e. Microorganisms 8 (11) (2020)
Corinne Eicher, Andres Ruiz Subira, Sabrina Corti, Arnulf Meusburger, Roger Stephan, Claudia Guldimann
Growth Potential of Listeria monocytogenes in Three Different Salmon Products. Foods (Basel, Switzerland) 9 (8) (2020)
Francis Muchaamba, Roger Stephan, Taurai Tasara
β-Phenylethylamine as a Natural Food Additive Shows Antimicrobial Activity against Listeria monocytogenes on Ready-to-Eat Foods. Foods (Basel, Switzerland) 9 (10) (2020)
Joseph M Wambui, Nicole Cernela, Marc J A Stevens, Roger Stephan
Draft Genome Sequence of Clostridium estertheticum CEST001, Belonging to a Novel Subspecies of C. estertheticum, Isolated from Chilled Vacuum-Packed Lamb Meat Imported to Switzerland. Microbiology resource announcements 9 (33) (2020)
Joseph M Wambui, Marina Morach, Nicole Cernela, Marc J A Stevens, Giovanni Ghielmetti, Roger Stephan
Draft Genome Sequence of Psychrobacter okhotskensis Strain 5179-1A, Isolated from a Raw Cured Ham Storage Crate. Microbiology resource announcements 9 (29) (2020)
Paul Tetteh Asare, Katrin Zurfluh, Anna Greppi, Denise Lynch, Clarissa Schwab, Roger Stephan, Christophe Lacroix
Reuterin Demonstrates Potent Antimicrobial Activity Against a Broad Panel of Human and Poultry Meat Campylobacter spp. Isolates. Microorganisms 8 (1) (2020)
Joseph M Wambui, Nicole Cernela, Marc J A Stevens, Giovanni Ghielmetti, Roger Stephan
Draft Genome Sequences of Two Clostridium algidicarnis Strains Isolated from Meat Juice Samples of Chilled Vacuum-Packed Lamb Meat. Microbiology resource announcements 9 (45) (2020)
Valerie Wist, Marina Morach, Marianne Schneeberger, Nicole Cernela, Marc J A Stevens, Katrin Zurfluh, Roger Stephan, Magdalena Nüesch-Inderbinen
Phenotypic and Genotypic Traits of Vancomycin-Resistant Enterococci from Healthy Food-Producing Animals. Microorganisms 8 (2) (2020)
Mariella Aalto-Araneda, Anna Pöntinen, Maiju Pesonen, Jukka Corander, Annukka Markkula, Taurai Tasara, Roger Stephan, Hannu Korkeala
Strain Variability of Listeria monocytogenes under NaCl Stress Elucidated by a High-Throughput Microbial Growth Data Assembly and Analysis Protocol. Applied and environmental microbiology 86 (6) (2020)
Jean-Guillaume Emond-Rheault, Jérémie Hamel, Julie Jeukens, Luca Freschi, Irena Kukavica-Ibrulj, Brian Boyle, Sandeep Tamber, Danielle Malo, Eelco Franz, Elton Burnett, France Daigle, Gitanjali Arya, Kenneth Sanderson, Martin Wiedmann, Robin M Slawson, Joel T Weadge, Roger Stephan, Sadjia Bekal, Samantha Gruenheid, Lawrence D Goodridge, Roger C Levesque
The Salmonella enterica Plasmidome as a Reservoir of Antibiotic Resistance. Microorganisms 8 (7) (2020)
Sarah Schmitt, Roger Stephan, Ella Huebschke, Daniel Schaefle, Axel Merz, Sophia Johler
DNA microarray-based characterization and antimicrobial resistance phenotypes of clinical MRSA strains from animal hosts. Journal of veterinary science 21 (4) (2020)
Marc J A Stevens, Nicole Cernela, Andrea Müller, Roger Stephan, Guido Bloemberg
Draft Genome Sequence of Salmonella bongori N19-781, a Clinical Strain from a Patient with Diarrhea. Microbiology resource announcements 8 (29) (2019)
Jule Anna Horlbog, Marc J A Stevens, Roger Stephan, Claudia Guldimann
Global Transcriptional Response of Three Highly Acid-Tolerant Field Strains of Listeria monocytogenes to HCl Stress. Microorganisms 7 (10) (2019)
Magdalena Nüesch-Inderbinen, Andrea Treier, Katrin Zurfluh, Roger Stephan
Raw meat-based diets for companion animals: a potential source of transmission of pathogenic and antimicrobial-resistant Enterobacteriaceae. Royal Society open science 6 (10) (2019)
Katrin Zurfluh, Marc J A Stevens, Melissa Bucher, Laurent Poirel, Patrice Nordmann, Roger Stephan
Full Genome Sequence of pT3, a Multiresistant Plasmid Carrying the mcr-3.5 Colistin Resistance Gene, Recovered from an Extended-Spectrum-β-Lactamase-Producing Escherichia coli Isolate from Crickets Sold as Food. Microbiology resource announcements 8 (29) (2019)
Joseph Wambui, Roger Stephan
Relevant Aspects of Clostridium estertheticum as a Specific Spoilage Organism of Vacuum-Packed Meat. Microorganisms 7 (5) (2019)
Andrea Stoller, Marc J A Stevens, Roger Stephan, Claudia Guldimann
Characteristics of Listeria Monocytogenes Strains Persisting in a Meat Processing Facility over a 4-Year Period. Pathogens (Basel, Switzerland) 8 (1) (2019)
Daniel Hurley, Laura Luque-Sastre, Craig T Parker, Steven Huynh, Athmanya K Eshwar, Scott V Nguyen, Nicholas Andrews, Alexandra Moura, Edward M Fox, Kieran Jordan, Angelika Lehner, Roger Stephan, Séamus Fanning
Whole-Genome Sequencing-Based Characterization of 100 Listeria monocytogenes Isolates Collected from Food Processing Environments over a Four-Year Period. mSphere 4 (4) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Roger Stephan