Ji-Sen Zhang (Jisen Zhang)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 38

Top Venues

The Plant journal : for cell and molecular biology

Nature communications

Planta

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Fangping Li, Zhuangwei Hou, Shiqiang Xu, Danlu Han, Bin Li, Haifei Hu, Jieying Liu, Shike Cai, Zhenpeng Gan, Yan Gu, Xiufeng Zhang, Xiao-Fan Zhou, Shaokui Wang, Junliang Zhao, Yu Mei, Ji-Sen Zhang, Zefu Wang, Jihua Wang
Haplotype-resolved genomes of octoploid species in Phyllanthaceae family reveal a critical role for polyploidization and hybridization in speciation. The Plant journal : for cell and molecular biology 119 (1) (2024)
Yixue Bao, Qing Zhang, Jiangfeng Huang, Shengcheng Zhang, Wei Yao, Zehuai Yu, Zuhu Deng, Jiaxin Yu, Weilong Kong, Xikai Yu, Shan Lu, Yibin Wang, Ru Li, Yuhan Song, Chengwu Zou, Yuzhi Xu, Zongling Liu, Fan Yu, Jiaming Song, Youzong Huang, Ji-Sen Zhang, Haifeng Wang, Baoshan Chen, Xing-Tan Zhang, Mu-Qing Zhang
A chromosomal-scale genome assembly of modern cultivated hybrid sugarcane provides insights into origination and evolution. Nature communications 15 (1) (2024)
Yongjun Fang, Xiaohu Xiao, Jishan Lin, Qiang Lin, Jiang Wang, Kaiye Liu, Zhonghua Li, Jianfeng Xing, Zhenglin Liu, Baiyu Wang, Yiying Qi, Xiangyu Long, Xia Zeng, Yanshi Hu, Jiyan Qi, Yunxia Qin, Jianghua Yang, Yi Zhang, Shengmin Zhang, De Ye, Ji-Sen Zhang, Jian-Quan Liu, Chaorong Tang
Pan-genome and phylogenomic analyses highlight Hevea species delineation and rubber trait evolution. Nature communications 15 (1) (2024)
Xiuting Hua, Huihong Shi, Gui Zhuang, Yuhong Lan, Shaoli Zhou, Dongxu Zhao, Ming-Ju Amy Lyu, Sehrish Akbar, Jia Liu, Yuan Yuan, Zhen Li, Qing Jiang, Kaixin Huang, Yating Zhang, Qing Zhang, Gang Wang, Yu Wang, Xiaomin Yu, Pinghua Li, Xing-Tan Zhang, Jianping Wang, Shenghua Xiao, Wei Yao, Ray Ming, Xin-Guang Zhu, Mu-Qing Zhang, Haibao Tang, Ji-Sen Zhang
Regulatory Network of the Late-Recruited Primary Decarboxylase C4NADP-ME in Sugarcane. Plant physiology (2024)
Yongjun Fang, Xiaohu Xiao, Jishan Lin, Qiang Lin, Jiang Wang, Kaiye Liu, Zhonghua Li, Jianfeng Xing, Zhenglin Liu, Baiyu Wang, Yiying Qi, Xiangyu Long, Xia Zeng, Yanshi Hu, Jiyan Qi, Yunxia Qin, Jianghua Yang, Yi Zhang, Shengmin Zhang, De Ye, Ji-Sen Zhang, Jian-Quan Liu, Chaorong Tang
Pan-genome and phylogenomic analyses highlight Hevea species delineation and rubber trait evolution. Nature communications 15 (1) (2024)
Yixue Bao, Qing Zhang, Jiangfeng Huang, Shengcheng Zhang, Wei Yao, Zehuai Yu, Zuhu Deng, Jiaxin Yu, Weilong Kong, Xikai Yu, Shan Lu, Yibin Wang, Ru Li, Yuhan Song, Chengwu Zou, Yuzhi Xu, Zongling Liu, Fan Yu, Jiaming Song, Youzong Huang, Ji-Sen Zhang, Haifeng Wang, Baoshan Chen, Xing-Tan Zhang, Mu-Qing Zhang
A chromosomal-scale genome assembly of modern cultivated hybrid sugarcane provides insights into origination and evolution. Nature communications 15 (1) (2024)
Siyuan Chen, Xiaoxi Feng, Zhe Zhang, Xiuting Hua, Qing Zhang, Chengjie Chen, Jiawei Li, Xiaojing Liu, Chenyu Weng, Baoshan Chen, Mu-Qing Zhang, Wei Yao, Haibao Tang, Ray Ming, Ji-Sen Zhang
ScDB: A comprehensive database dedicated to Saccharum, facilitating functional genomics and molecular biology studies in sugarcane. Plant biotechnology journal (2024)
Xiuting Hua, Zhen Li, Meijie Dou, Yanqing Zhang, Dongxu Zhao, Huihong Shi, Yihan Li, Shuangyu Li, Yumin Huang, Yiying Qi, Baiyu Wang, Qiyun Wang, Qiaoyu Wang, Ruiting Gao, Ray Ming, Haibao Tang, Wei Yao, Muqing Zhang, Ji-Sen Zhang
Transcriptome and small RNA analysis unveils novel insights into the C 4 gene regulation in sugarcane. Planta 259 (5) (2024)
Xuhui Li, Xinglong Chen, Junteng Fang, Xiaomin Feng, Xiangbo Zhang, Huanzhang Lin, Weiwei Chen, Nannan Zhang, Huiyi He, Zhenghui Huang, Xiaoming Xue, Yucong Li, Lina Fan, Ruiqiang Lai, Zhenye Huo, Mingyang Cui, Guangyan Deng, Chachar Zaid, Yueping Su, Ji-Sen Zhang, Weijun Cai, Yongwen Qi
Whole-genome sequencing of a worldwide collection of sugarcane cultivars (Saccharum spp.) reveals the genetic basis of cultivar improvement. The Plant journal : for cell and molecular biology (2024)
Xiuting Hua, Zhen Li, Meijie Dou, Yanqing Zhang, Dongxu Zhao, Huihong Shi, Yihan Li, Shuangyu Li, Yumin Huang, Yiying Qi, Baiyu Wang, Qiyun Wang, Qiaoyu Wang, Ruiting Gao, Ray Ming, Haibao Tang, Wei Yao, Muqing Zhang, Ji-Sen Zhang
Transcriptome and small RNA analysis unveils novel insights into the C 4 gene regulation in sugarcane. Planta 259 (5) (2024)
Xuhui Li, Xinglong Chen, Junteng Fang, Xiaomin Feng, Xiangbo Zhang, Huanzhang Lin, Weiwei Chen, Nannan Zhang, Huiyi He, Zhenghui Huang, Xiaoming Xue, Yucong Li, Lina Fan, Ruiqiang Lai, Zhenye Huo, Mingyang Cui, Guangyan Deng, Chachar Zaid, Yueping Su, Ji-Sen Zhang, Weijun Cai, Yongwen Qi
Whole-genome sequencing of a worldwide collection of sugarcane cultivars (Saccharum spp.) reveals the genetic basis of cultivar improvement. The Plant journal : for cell and molecular biology 119 (5) (2024)
Fangping Li, Zhuangwei Hou, Shiqiang Xu, Danlu Han, Bin Li, Haifei Hu, Jieying Liu, Shike Cai, Zhenpeng Gan, Yan Gu, Xiufeng Zhang, Xiao-Fan Zhou, Shaokui Wang, Junliang Zhao, Yu Mei, Ji-Sen Zhang, Zefu Wang, Jihua Wang
Haplotype-resolved genomes of octoploid species in Phyllanthaceae family reveal a critical role for polyploidization and hybridization in speciation. The Plant journal : for cell and molecular biology (2024)
Yongjun Fang, Xiaohu Xiao, Jishan Lin, Qiang Lin, Jiang Wang, Kaiye Liu, Zhonghua Li, Jianfeng Xing, Zhenglin Liu, Baiyu Wang, Yiying Qi, Xiangyu Long, Xia Zeng, Yanshi Hu, Jiyan Qi, Yunxia Qin, Jianghua Yang, Yi Zhang, Shengmin Zhang, De Ye, Ji-Sen Zhang, Jian-Quan Liu, Chaorong Tang
Pan-genome and phylogenomic analyses highlight Hevea species delineation and rubber trait evolution. Nature communications 15 (1) (2024)
Yixue Bao, Qing Zhang, Jiangfeng Huang, Shengcheng Zhang, Wei Yao, Zehuai Yu, Zuhu Deng, Jiaxin Yu, Weilong Kong, Xikai Yu, Shan Lu, Yibin Wang, Ru Li, Yuhan Song, Chengwu Zou, Yuzhi Xu, Zongling Liu, Fan Yu, Jiaming Song, Youzong Huang, Ji-Sen Zhang, Haifeng Wang, Baoshan Chen, Xing-Tan Zhang, Mu-Qing Zhang
A chromosomal-scale genome assembly of modern cultivated hybrid sugarcane provides insights into origination and evolution. Nature communications 15 (1) (2024)
Xiuting Hua, Zhen Li, Meijie Dou, Yanqing Zhang, Dongxu Zhao, Huihong Shi, Yihan Li, Shuangyu Li, Yumin Huang, Yiying Qi, Baiyu Wang, Qiyun Wang, Qiaoyu Wang, Ruiting Gao, Ray Ming, Haibao Tang, Wei Yao, Muqing Zhang, Ji-Sen Zhang
Transcriptome and small RNA analysis unveils novel insights into the C 4 gene regulation in sugarcane. Planta 259 (5) (2024)
Qing Jiang, Xiuting Hua, Huihong Shi, Jia Liu, Yuan Yuan, Zhen Li, Shuangyu Li, Meiqing Zhou, Chongyang Yin, Meijie Dou, Nameng Qi, Yongjun Wang, Muqing Zhang, Ray Ming, Haibao Tang, Ji-Sen Zhang
Transcriptome dynamics provides insights into divergences of photosynthesis pathway between Saccharum officinarum and Saccharum spontaneum. The Plant journal : for cell and molecular biology (2023)
Qing Jiang, Xiuting Hua, Huihong Shi, Jia Liu, Yuan Yuan, Zhen Li, Shuangyu Li, Meiqing Zhou, Chongyang Yin, Meijie Dou, Nameng Qi, Yongjun Wang, Muqing Zhang, Ray Ming, Haibao Tang, Ji-Sen Zhang
Transcriptome dynamics provides insights into divergences of the photosynthesis pathway between Saccharum officinarum and Saccharum spontaneum. The Plant journal : for cell and molecular biology 113 (6) (2023)
Qing Jiang, Xiuting Hua, Huihong Shi, Jia Liu, Yuan Yuan, Zhen Li, Shuangyu Li, Meiqing Zhou, Chongyang Yin, Meijie Dou, Nameng Qi, Yongjun Wang, Muqing Zhang, Ray Ming, Haibao Tang, Ji-Sen Zhang
Transcriptome dynamics provides insights into divergences of the photosynthesis pathway between Saccharum officinarum and Saccharum spontaneum. The Plant journal : for cell and molecular biology 113 (6) (2023)
Zhen Huang, Yuming Zhou, Huixue Li, Yixue Bao, Zhenzhen Duan, Caixia Wang, Charles A Powell, Kai Wang, Qin Hu, Baoshan Chen, Ji-Sen Zhang, Mu-Qing Zhang, Wei Yao
Identification of common fungal extracellular membrane (CFEM) proteins in Fusarium sacchari that inhibit plant immunity and contribute to virulence. Microbiology spectrum (2023)
Qing Jiang, Xiuting Hua, Huihong Shi, Jia Liu, Yuan Yuan, Zhen Li, Shuangyu Li, Meiqing Zhou, Chongyang Yin, Meijie Dou, Nameng Qi, Yongjun Wang, Muqing Zhang, Ray Ming, Haibao Tang, Ji-Sen Zhang
Transcriptome dynamics provides insights into divergences of the photosynthesis pathway between Saccharum officinarum and Saccharum spontaneum. The Plant journal : for cell and molecular biology 113 (6) (2023)
Qing Jiang, Xiuting Hua, Huihong Shi, Jia Liu, Yuan Yuan, Zhen Li, Shuangyu Li, Meiqing Zhou, Chongyang Yin, Meijie Dou, Nameng Qi, Yongjun Wang, Muqing Zhang, Ray Ming, Haibao Tang, Ji-Sen Zhang
Transcriptome dynamics provides insights into divergences of the photosynthesis pathway between Saccharum officinarum and Saccharum spontaneum. The Plant journal : for cell and molecular biology (2023)
Tianyou Wang, Baiyu Wang, Xiuting Hua, Haibao Tang, Zeyu Zhang, Ruiting Gao, Yiying Qi, Qing Zhang, Gang Wang, Zehuai Yu, Yongji Huang, Zhe Zhang, Jing Mei, Yuhao Wang, Yixing Zhang, Yihan Li, Xue Meng, Yongjun Wang, Haoran Pan, Shuqi Chen, Zhen Li, Huihong Shi, Xinlong Liu, Zuhu Deng, Baoshan Chen, Muqing Zhang, Lianfeng Gu, Jianping Wang, Ray Ming, Wei Yao, Ji-Sen Zhang
A complete gap-free diploid genome in Saccharum complex and the genomic footprints of evolution in the highly polyploid Saccharum genus. Nature plants (2023)
Liang Ma, Ke-Wei Liu, Zhen Li, Yu-Yun Hsiao, Yiying Qi, Tao Fu, Guang-Da Tang, Di-Yang Zhang, Wei-Hong Sun, Ding-Kun Liu, Yuanyuan Li, Gui-Zhen Chen, Xue-Die Liu, Xing-Yu Liao, Yu-Ting Jiang, Xia Yu, Yang Hao, Jie Huang, Xue-Wei Zhao, Shijie Ke, You-Yi Chen, Wan-Lin Wu, Jui-Ling Hsu, Yu-Fu Lin, Ming-Der Huang, Chia-Ying Li, Laiqiang Huang, Zhi-Wen Wang, Xiang Zhao, Wen-Ying Zhong, Dong-Hui Peng, Sagheer Ahmad, Si-Ren Lan, Ji-Sen Zhang, Wen-Chieh Tsai, Yves Van de Peer, Zhong-Jian Liu
Diploid and tetraploid genomes of Acorus and the evolution of monocots. Nature communications 14 (1) (2023)
Hai Zhang, Zongtao Yang, Guangyuan Cheng, Tingxu Luo, Kang Zeng, Wendi Jiao, Yingshuan Zhou, Guoqiang Huang, Ji-Sen Zhang, Jingsheng Xu
Sugarcane mosaic virus employs 6K2 protein to impair ScPIP2; 4 transport of H2O2 to facilitate virus infection. Plant physiology (2023)
Guibing Hu, Junting Feng, Xu Xiang, Jiabao Wang, Jarkko Salojärvi, Chengming Liu, Zhenxian Wu, Ji-Sen Zhang, Xinming Liang, Zide Jiang, Wei Liu, Liangxi Ou, Jiawei Li, Guangyi Fan, Yingxiao Mai, Chengjie Chen, Xingtan Zhang, Jiakun Zheng, Yanqing Zhang, Hongxiang Peng, Lixian Yao, Ching Man Wai, Xinping Luo, Jiaxin Fu, Haibao Tang, Tianying Lan, Biao Lai, Jinhua Sun, Yongzan Wei, Huanling Li, Jiezhen Chen, Xuming Huang, Qian Yan, Xin Liu, Leah K McHale, William Rolling, Romain Guyot, David Sankoff, Chunfang Zheng, Victor A Albert, Ray Ming, Houbin Chen, Rui Xia, Jianguo Li
Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars. Nature genetics 54 (1) (2022)
Yihan Li, Yongjun Wang, Xiaoxi Feng, Xiuting Hua, Meijie Dou, Wei Yao, Mu-Qing Zhang, Ji-Sen Zhang
Expression Profiling and MicroRNA Regulatory Networks of Homeobox Family Genes in Sugarcane Saccharum spontaneum L. International journal of molecular sciences 23 (15) (2022)
Qing Zhang, Yiying Qi, Haoran Pan, Haibao Tang, Gang Wang, Xiuting Hua, Yongjun Wang, Lianyu Lin, Zhen Li, Yihan Li, Fan Yu, Zehuai Yu, Yongji Huang, Tianyou Wang, Panpan Ma, Meijie Dou, Zongyi Sun, Yibin Wang, Hengbo Wang, Xingtan Zhang, Wei Yao, Yuntong Wang, Xinlong Liu, Maojun Wang, Jianping Wang, Zuhu Deng, Jingsheng Xu, Qinghui Yang, Zhong-Jian Liu, Baoshan Chen, Muqing Zhang, Ray Ming, Ji-Sen Zhang
Genomic insights into the recent chromosome reduction of autopolyploid sugarcane Saccharum spontaneum. Nature genetics 54 (6) (2022)
Wenping Zhang, Jishan Lin, Jianguo Li, Shaoquan Zheng, Xingtan Zhang, Shuai Chen, Xiaokai Ma, Fei Dong, Haifeng Jia, Xiuming Xu, Ziqin Yang, Panpan Ma, Fang Deng, Ban Deng, Yongji Huang, Zhanjie Li, Xiaozhou Lv, Yaying Ma, Zhenyang Liao, Zhicong Lin, Jing Lin, Shengcheng Zhang, Tracie Matsumoto, Rui Xia, Ji-Sen Zhang, Ray Ming
Rambutan genome revealed gene networks for spine formation and aril development. The Plant journal : for cell and molecular biology 108 (4) (2021)
Wenshun Hu, Baiyu Wang, Muhammad Moaaz Ali, Xiuping Chen, Ji-Sen Zhang, Shaoquan Zheng, Faxing Chen
Free Amino Acids Profile and Expression Analysis of Core Genes Involved in Branched-Chain Amino Acids Metabolism during Fruit Development of Longan (Dimocarpus longan Lour.) Cultivars with Different Aroma Types. Biology 10 (8) (2021)
Yi Wang, Haiping Xin, Peige Fan, Ji-Sen Zhang, Yongbo Liu, Yang Dong, Zemin Wang, Yingzhen Yang, Qing Zhang, Ray Ming, Gan-Yuan Zhong, Shaohua Li, Zhengchang Liang
The genome of Shanputao (Vitis amurensis) provides a new insight into cold tolerance of grapevine. The Plant journal : for cell and molecular biology 105 (6) (2021)
Gang Wang, Yuanyuan Wang, Lianfu Chen, Hongbo Wang, Lin Guo, Xuan Zhou, Meijie Dou, Baiyu Wang, Jingxian Lin, Lei Liu, Zhengchao Wang, Youjin Deng, Ji-Sen Zhang
Genetic structure and evolutionary diversity of mating-type (MAT) loci in Hypsizygus marmoreus. IMA fungus 12 (1) (2021)
Qing Zhang, Xiuting Hua, Hong Liu, Yuan Yuan, Yan Shi, Zhengchao Wang, Muqing Zhang, Ray Ming, Ji-Sen Zhang
Evolutionary expansion and functional divergence of sugar transporters in Saccharum (S. spontaneum and S. officinarum). The Plant journal : for cell and molecular biology 105 (4) (2020)
Duo Chen, Qing Zhang, Weiqi Tang, Zhen Huang, Gang Wang, Yongjun Wang, Jiaxian Shi, Huimin Xu, Lianyu Lin, Zhen Li, Wenchao Chi, Likun Huang, Jing Xia, Xingtan Zhang, Lin Guo, Yuanyuan Wang, Panpan Ma, Juan Tang, Gang Zhou, Min Liu, Fuyan Liu, Xiuting Hua, Baiyu Wang, Qiaochu Shen, Qing Jiang, Jingxian Lin, Xuequn Chen, Hongbo Wang, Meijie Dou, Lei Liu, Haoran Pan, Yiying Qi, Bin Wu, Jingping Fang, Yitao Zhou, Wan Cen, Wenjin He, Qiujin Zhang, Ting Xue, Gang Lin, Wenchun Zhang, Zhongjian Liu, Liming Qu, Aiming Wang, Qichang Ye, Jianming Chen, Yanding Zhang, Ray Ming, Marc Van Montagu, Haibao Tang, Yves Van de Peer, Youqiang Chen, Ji-Sen Zhang
The evolutionary origin and domestication history of goldfish (Carassius auratus). Proceedings of the National Academy of Sciences of the United States of America 117 (47) (2020)
Gang Wang, Jingxian Lin, Yang Shi, Xiaoguang Chang, Yuanyuan Wang, Lin Guo, Wenhui Wang, Meijie Dou, Youjin Deng, Ray Ming, Ji-Sen Zhang
Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya. BMC genomics 20 (1) (2019)
Yongjun Wang, Xiuting Hua, Jingsheng Xu, Zhichang Chen, Tianqu Fan, Zhaohui Zeng, Hengbo Wang, Ai-Ling Hour, Qingyi Yu, Ray Ming, Ji-Sen Zhang
Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum. BMC genomics 20 (1) (2019)
Guangyuan Cheng, Zongtao Yang, Hai Zhang, Ji-Sen Zhang, Jingsheng Xu
Remorin interacting with PCaP1 impairs Turnip mosaic virus intercellular movement but is antagonised by VPg. The New phytologist 225 (5) (2019)
Weichang Hu, Xiuting Hua, Qing Zhang, Jianping Wang, Qiaochu Shen, Xingtan Zhang, Kai Wang, Qingyi Yu, Yann-Rong Lin, Ray Ming, Ji-Sen Zhang
New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics. BMC plant biology 18 (1) (2018)
Ji-Sen Zhang, Xingtan Zhang, Haibao Tang, Qing Zhang, Xiuting Hua, Xiaokai Ma, Fan Zhu, Tyler Jones, Xinguang Zhu, John Bowers, Ching Man Wai, Chunfang Zheng, Yan Shi, Shuai Chen, Xiuming Xu, Jingjing Yue, David R Nelson, Lixian Huang, Zhen Li, Huimin Xu, Dong Zhou, Yongjun Wang, Weichang Hu, Jishan Lin, Youjin Deng, Neha Pandey, Melina Mancini, Dessireé Zerpa, Julie K Nguyen, Liming Wang, Liang Yu, Yinghui Xin, Liangfa Ge, Jie Arro, Jennifer O Han, Setu Chakrabarty, Marija Pushko, Wenping Zhang, Yanhong Ma, Panpan Ma, Mingju Lv, Faming Chen, Guangyong Zheng, Jingsheng Xu, Zhenhui Yang, Fang Deng, Xuequn Chen, Zhenyang Liao, Xunxiao Zhang, Zhicong Lin, Hai Lin, Hansong Yan, Zheng Kuang, Weimin Zhong, Pingping Liang, Guofeng Wang, Yuan Yuan, Jiaxian Shi, Jinxiang Hou, Jingxian Lin, Jingjing Jin, Peijian Cao, Qiaochu Shen, Qing Jiang, Ping Zhou, Yaying Ma, Xiaodan Zhang, Rongrong Xu, Juan Liu, Yongmei Zhou, Haifeng Jia, Qing Ma, Rui Qi, Zhiliang Zhang, Jingping Fang, Hongkun Fang, Jinjin Song, Mengjuan Wang, Guangrui Dong, Gang Wang, Zheng Chen, Teng Ma, Hong Liu, Singha R Dhungana, Sarah E Huss, Xiping Yang, Anupma Sharma, Jhon H Trujillo, Maria C Martinez, Matthew E Hudson, John J Riascos, Mary Schuler, Li-Qing Chen, David M Braun, Lei Li, Qingyi Yu, Jianping Wang, Kai Wang, Michael C Schatz, David Heckerman, Marie-Anne Van Sluys, Glaucia Mendes Souza, Paul H Moore, David Sankoff, Robert VanBuren, Andrew H Paterson, Chifumi Nagai, Ray Ming
Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature genetics 50 (11) (2018)

Ji-Sen Zhang.css-eqlu8i{font-size:small;padding-left:4px;} (Jisen Zhang)

Publication Activity (10 Years)

Top Topics

Top Venues

Ji-Sen Zhang (Jisen Zhang)