David Sankoff

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 23

Top Topics

Embryonic Stem Cells

Candida Albicans

Cystic Fibrosis

Top Venues

Nature genetics

Journal of computational biology : a journal of computational molecular cell biology

Entropy (Basel, Switzerland)

Genome research

This page only lists publications with an associated author ORCID identifier.

Publications

Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J Krabbenhoft, Zhen Qin Wang, Steven J Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter F Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Jennifer Wai, Nicolas Dauchot, Simon Orozco-Arias, Andréa Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Gustavo Hiroshi Sera, Tom Ruttink, Robert Henry, Pierre Marraccini, Yves Van de Peer, Alan Andrade, Douglas Silva Domingues, Giovanni Giuliano, Lukas Mueller, Luiz Filipe Pereira, Stéphane Plaisance, Valerie Poncet, Stéphane Rombauts, David Sankoff, Victor A Albert, Dominique Crouzillat, Alexandre de Kochko, Patrick Descombes
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature genetics 56 (4) (2024)
Mona Meghdari Miardan, Arash Jamshidpey, David Sankoff
Escape from Parsimony of a Double-Cut-and-Join Genome Evolution Process. Journal of computational biology : a journal of computational molecular cell biology 30 (2) (2023)
Mona Meghdari Miardan, Arash Jamshidpey, David Sankoff
Escape from Parsimony of a Double-Cut-and-Join Genome Evolution Process. Journal of computational biology : a journal of computational molecular cell biology 30 (2) (2023)
Mona Meghdari Miardan, Arash Jamshidpey, David Sankoff
Escape from Parsimony of a Double-Cut-and-Join Genome Evolution Process. Journal of computational biology : a journal of computational molecular cell biology 30 (2) (2023)
Mona Meghdari Miardan, Arash Jamshidpey, David Sankoff
Escape from Parsimony of a Double-Cut-and-Join Genome Evolution Process. Journal of computational biology : a journal of computational molecular cell biology 30 (2) (2023)
Haitian Zhong, David Sankoff
Capacity, Collision Avoidance and Shopping Rate under a Social Distancing Regime. Entropy (Basel, Switzerland) 25 (12) (2023)
Mona Meghdari Miardan, Arash Jamshidpey, David Sankoff
Escape from Parsimony of a Double-Cut-and-Join Genome Evolution Process. Journal of computational biology : a journal of computational molecular cell biology (2023)
Haitian Zhong, David Sankoff
Capacity, Collision Avoidance and Shopping Rate under a Social Distancing Regime. Entropy (Basel, Switzerland) 25 (12) (2023)
Guibing Hu, Junting Feng, Xu Xiang, Jiabao Wang, Jarkko Salojärvi, Chengming Liu, Zhenxian Wu, Ji-Sen Zhang, Xinming Liang, Zide Jiang, Wei Liu, Liangxi Ou, Jiawei Li, Guangyi Fan, Yingxiao Mai, Chengjie Chen, Xingtan Zhang, Jiakun Zheng, Yanqing Zhang, Hongxiang Peng, Lixian Yao, Ching Man Wai, Xinping Luo, Jiaxin Fu, Haibao Tang, Tianying Lan, Biao Lai, Jinhua Sun, Yongzan Wei, Huanling Li, Jiezhen Chen, Xuming Huang, Qian Yan, Xin Liu, Leah K McHale, William Rolling, Romain Guyot, David Sankoff, Chunfang Zheng, Victor A Albert, Ray Ming, Houbin Chen, Rui Xia, Jianguo Li
Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars. Nature genetics 54 (1) (2022)
Qiaoji Xu, Lingling Jin, Yue Zhang, Xiaomeng Zhang, Chunfang Zheng, James H Leebens-Mack, David Sankoff
Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-Occurrences. Journal of computational biology : a journal of computational molecular cell biology 28 (11) (2022)
Andre S Chanderbali, Lingling Jin, Qiaoji Xu, Yue Zhang, Jingbo Zhang, Shuguang Jian, Emily Carroll, David Sankoff, Victor A Albert, Dianella G Howarth, Douglas Edward Soltis, Pamela S Soltis
Buxus and Tetracentron genomes help resolve eudicot genome history. Nature communications 13 (1) (2022)
Yue Hao, Makenzie E Mabry, Patrick P Edger, Michael Freeling, Chunfang Zheng, Lingling Jin, Robert VanBuren, Marivi Colle, Hong An, R Shawn Abrahams, Jacob D Washburn, Xinshuai Qi, Kerrie W Barry, Christopher Daum, Shengqiang Shu, Jeremy Schmutz, David Sankoff, Michael S Barker, Eric Lyons, Joseph Chris Pires, Gavin C Conant
The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. Genome research 31 (5) (2021)
Yue Zhang, Zhe Yu, Chunfang Zheng, David Sankoff
Integrated synteny- and similarity-based inference on the polyploidization-fractionation cycle. Interface focus 11 (4) (2021)
Sampath Perumal, Chu Shin Koh, Lingling Jin, Miles Buchwaldt, Erin E Higgins, Chunfang Zheng, David Sankoff, Stephen J Robinson, Sateesh Kagale, Zahra-Katy Navabi, Lily Tang, Kyla N Horner, Zhesi He, Ian Bancroft, Boulos Chalhoub, Andrew G Sharpe, Isobel A P Parkin
A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome. Nature plants 6 (8) (2020)
Yue Zhang, Chunfang Zheng, David Sankoff
A branching process for homology distribution-based inference of polyploidy, speciation and loss. Algorithms for molecular biology : AMB 14 (2019)