Ruibin Liu

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 26

Top Venues

bioRxiv : the preprint server for biology

Journal of chemical information and modeling

ACS chemical neuroscience

Living journal of computational molecular science

ComputChem LLC

Duke University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

ComputChem LLC Sep 03 2019

United States

Senior Scientist

University of Maryland School of Pharmacy Jul 09 2018 - Aug 31 2019

United States

Postdoctoral Research Fellow :: Department of Pharmaceutical Sciences

Education History

Duke University Aug 10 2011 - May 31 2018

United States

PHD :: Chemistry

University of Science and Technology of China Aug 16 2007 - May 31 2011

China

BSC :: Chemical Physics

Publications

Myong In Oh, Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Jana Shen
Machine Learned Classification of Ligand Intrinsic Activities at Human μ -Opioid Receptor. bioRxiv : the preprint server for biology (2024)
Myong In Oh, Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Jana Shen
Machine Learned Classification of Ligand Intrinsic Activities at Human μ-Opioid Receptor. ACS chemical neuroscience (2024)
Craig A Peeples, Ruibin Liu, Jana Shen
Force Field Limitations of All-Atom Continuous Constant pH Molecular Dynamics. bioRxiv : the preprint server for biology (2024)
Myong In Oh, Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Jana Shen
Machine Learned Classification of Ligand Intrinsic Activities at Human μ -Opioid Receptor. bioRxiv : the preprint server for biology (2024)
Myong In Oh, Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Jana Shen
Machine Learned Classification of Ligand Intrinsic Activity at Human µ -Opioid Receptor. bioRxiv : the preprint server for biology (2024)
Mohamed Ibrahim, Xinyuanyuan Sun, Vinicius Martins de Oliveira, Ruibin Liu, Joseph Clayton, Haifa El Kilani, Jana Shen, Rolf Hilgenfeld
Why is the Omicron main protease of SARS-CoV-2 less stable than its wild-type counterpart? A crystallographic, biophysical, and theoretical study of the free enzyme and its complex with inhibitor 13b-K. bioRxiv : the preprint server for biology (2024)
Mohamed Ibrahim, Xinyuanyuan Sun, Vinicius Martins de Oliveira, Ruibin Liu, Joseph Clayton, Haifa El Kilani, Jana Shen, Rolf Hilgenfeld
Why is the Omicron main protease of SARS-CoV-2 less stable than its wild-type counterpart? A crystallographic, biophysical, and theoretical study of the free enzyme and its complex with inhibitor 13b-K. bioRxiv : the preprint server for biology (2024)
Mohamed Ibrahim, Xinyuanyuan Sun, Vinicius Martins de Oliveira, Ruibin Liu, Joseph Clayton, Haifa El Kilani, Jana Shen, Rolf Hilgenfeld
Why is the Omicron main protease of SARS-CoV-2 less stable than its wild-type counterpart? A crystallographic, biophysical, and theoretical study of the free enzyme and its complex with inhibitor 13b-K. bioRxiv : the preprint server for biology (2024)
Myong In Oh, Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Jana Shen
Machine Learned Classification of Ligand Intrinsic Activities at Human μ-Opioid Receptor. ACS chemical neuroscience (2024)
Mohamed Ibrahim, Xinyuanyuan Sun, Vinicius Martins de Oliveira, Ruibin Liu, Joseph Clayton, Haifa El Kilani, Jana Shen, Rolf Hilgenfeld
Why is the Omicron main protease of SARS-CoV-2 less stable than its wild-type counterpart? A crystallographic, biophysical, and theoretical study of the free enzyme and its complex with inhibitor 13b-K. bioRxiv : the preprint server for biology (2024)
Myong In Oh, Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Jana Shen
Machine Learned Classification of Ligand Intrinsic Activity at Human µ -Opioid Receptor. bioRxiv : the preprint server for biology (2024)
Myong In Oh, Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Jana Shen
Machine Learned Classification of Ligand Intrinsic Activities at Human mu-Opioid Receptor. bioRxiv : the preprint server for biology (2024)
Myong In Oh, Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Jana Shen
Machine Learned Classification of Ligand Intrinsic Activities at Human μ-Opioid Receptor. ACS chemical neuroscience 15 (15) (2024)
Myong In Oh, Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Jana Shen
Machine Learned Classification of Ligand Intrinsic Activity at Human μ -Opioid Receptor. bioRxiv : the preprint server for biology (2024)
Myong In Oh, Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Jana Shen
Machine Learned Classification of Ligand Intrinsic Activities at Human μ -Opioid Receptor. bioRxiv : the preprint server for biology (2024)
Aarion Romany, Ruibin Liu, Shaoqi Zhan, Joseph Clayton, Jana Shen
Analysis of the ERK Pathway Cysteinome for Targeted Covalent Inhibition of RAF and MEK Kinases. Journal of chemical information and modeling (2023)
Paween Mahinthichaichan, Ruibin Liu, Quynh N Vo, Christopher R Ellis, Lidiya Stavitskaya, Jana Shen
Structure-Kinetics Relationships of Opioids from Metadynamics and Machine Learning. bioRxiv : the preprint server for biology (2023)
Ruibin Liu, Erik Antonio Vázquez-Montelongo, Shuhua Ma, Jana Shen
Quantum Descriptors for Predicting and Understanding the Structure-Activity Relationships of Michael Acceptor Warheads. Journal of chemical information and modeling (2023)
Paween Mahinthichaichan, Ruibin Liu, Quynh N Vo, Christopher R Ellis, Lidiya Stavitskaya, Jana Shen
Structure-Kinetics Relationships of Opioids from Metadynamics and Machine Learning Analysis. Journal of chemical information and modeling (2023)
Ruibin Liu, Joseph Clayton, Mingzhe Shen, Jana Shen
Interrogating Proteome-wide Cysteine Ligandabilities: Crystallography Meets Chemoproteomics Through Machine Learning. bioRxiv : the preprint server for biology (2023)
Jack A Henderson, Ruibin Liu, Robert C Harris, Yandong Huang, Vinicius Martins de Oliveira, Jana Shen
A Guide to the Continuous Constant pH Molecular Dynamics Methods in Amber and CHARMM [Article v1.0]. Living journal of computational molecular science 4 (1) (2022)
Jack A Henderson, Ruibin Liu, Robert C Harris, Yandong Huang, Vinicius Martins de Oliveira, Jana Shen
A Guide to the Continuous Constant pH Molecular Dynamics Methods in Amber and CHARMM [Article v1.0]. Living journal of computational molecular science 4 (1) (2022)
Ruibin Liu, Neha Verma, Jack A Henderson, Shaoqi Zhan, Jana Shen
Profiling MAP kinase cysteines for targeted covalent inhibitor design. RSC medicinal chemistry 13 (1) (2021)
Robert C Harris, Ruibin Liu, Jana Shen
Predicting Reactive Cysteines with Implicit-Solvent-Based Continuous Constant pH Molecular Dynamics in Amber. Journal of chemical theory and computation 16 (6) (2020)
Jack A Henderson, Neha Verma, Robert C Harris, Ruibin Liu, Jana Shen
Assessment of proton-coupled conformational dynamics of SARS and MERS coronavirus papain-like proteases: Implication for designing broad-spectrum antiviral inhibitors. The Journal of chemical physics 153 (11) (2020)
Ruibin Liu, Zhi Yue, Cheng-Chieh Tsai, Jana Shen
Assessing Lysine and Cysteine Reactivities for Designing Targeted Covalent Kinase Inhibitors. Journal of the American Chemical Society 141 (16) (2019)

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Publication Activity (10 Years)

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Ruibin Liu