Rustem F Ismagilov

ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 33

Top Venues

Microbiology spectrum

Microbiome

PloS one

Nature communications

California Institute of Technology

This page only lists publications with an associated author ORCID identifier.

Affiliation History

California Institute of Technology

United States

Professor :: CCE, BBE

Publications

Alexander Viloria Winnett, Reid Akana, Natasha Shelby, Hannah Davich, Saharai Caldera, Taikun Yamada, John Raymond B Reyna, Anna E Romano, Alyssa M Carter, Mi Kyung Kim, Matt Thomson, Colten Tognazzini, Matthew Feaster, Ying-Ying Goh, Yap Ching Chew, Rustem F Ismagilov
Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods. PNAS nexus 2 (3) (2023)
Jenny Ji, Alexander Viloria Winnett, Natasha Shelby, Jessica A Reyes, Noah W Schlenker, Hannah Davich, Saharai Caldera, Colten Tognazzini, Ying-Ying Goh, Matt Feaster, Rustem F Ismagilov
Index cases first identified by nasal-swab rapid COVID-19 tests had more transmission to household contacts than cases identified by other test types. PloS one 18 (10) (2023)
Natalie J Wu-Woods, Jacob T Barlow, Florian Trigodet, Dustin G Shaw, Anna E Romano, Bana Jabri, A Murat Eren, Rustem F Ismagilov
Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples. Nature methods (2023)
Alexander Viloria Winnett, Reid Akana, Natasha Shelby, Hannah Davich, Saharai Caldera, Taikun Yamada, John Raymond B Reyna, Anna E Romano, Alyssa M Carter, Mi Kyung Kim, Matt Thomson, Colten Tognazzini, Matthew Feaster, Ying-Ying Goh, Yap Ching Chew, Rustem F Ismagilov
Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods. PNAS nexus 2 (3) (2023)
Alyssa M Carter, Alexander Viloria Winnett, Anna E Romano, Reid Akana, Natasha Shelby, Rustem F Ismagilov
Laboratory Evaluation Links Some False-Positive COVID-19 Antigen Test Results Observed in a Field Study to a Specific Lot of Test Strips. Open forum infectious diseases 10 (1) (2023)
Alyssa M Carter, Alexander Viloria Winnett, Anna E Romano, Reid Akana, Natasha Shelby, Rustem F Ismagilov
Laboratory Evaluation Links Some False-Positive COVID-19 Antigen Test Results Observed in a Field Study to a Specific Lot of Test Strips. Open forum infectious diseases 10 (1) (2023)
Alexander Viloria Winnett, Reid Akana, Natasha Shelby, Hannah Davich, Saharai Caldera, Taikun Yamada, John Raymond B Reyna, Anna E Romano, Alyssa M Carter, Mi Kyung Kim, Matt Thomson, Colten Tognazzini, Matthew Feaster, Ying-Ying Goh, Yap Ching Chew, Rustem F Ismagilov
Daily SARS-CoV-2 Nasal Antigen Tests Miss Infected and Presumably Infectious People Due to Viral Load Differences among Specimen Types. Microbiology spectrum (2023)
Roberta Poceviciute, Said R Bogatyrev, Anna E Romano, Amanda Hazel Dilmore, Octavio Mondragón-Palomino, Heli Takko, Ojas Pradhan, Rustem F Ismagilov
Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa. NPJ biofilms and microbiomes 9 (1) (2023)
Alexander Viloria Winnett, Michael K Porter, Anna E Romano, Emily S Savela, Reid Akana, Natasha Shelby, Jessica A Reyes, Noah W Schlenker, Matthew M Cooper, Alyssa M Carter, Jenny Ji, Jacob T Barlow, Colten Tognazzini, Matthew Feaster, Ying-Ying Goh, Rustem F Ismagilov
Morning SARS-CoV-2 Testing Yields Better Detection of Infection Due to Higher Viral Loads in Saliva and Nasal Swabs upon Waking. Microbiology spectrum (2022)
Octavio Mondragón-Palomino, Roberta Poceviciute, Antti Lignell, Jessica A Griffiths, Heli Takko, Rustem F Ismagilov
Three-dimensional imaging for the quantification of spatial patterns in microbiota of the intestinal mucosa. Proceedings of the National Academy of Sciences of the United States of America 119 (18) (2022)
Emily S Savela, Alexander Viloria Winnett, Anna E Romano, Michael K Porter, Natasha Shelby, Reid Akana, Jenny Ji, Matthew M Cooper, Noah W Schlenker, Jessica A Reyes, Alyssa M Carter, Jacob T Barlow, Colten Tognazzini, Matthew Feaster, Ying-Ying Goh, Rustem F Ismagilov
Quantitative SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs Inform Appropriate Respiratory Sampling Site and Analytical Test Sensitivity Required for Earliest Viral Detection. Journal of clinical microbiology 60 (2) (2021)
Mary V Arrastia, Joanna W Jachowicz, Noah Ollikainen, Matthew S Curtis, Charlotte Lai, Sofia A Quinodoz, David A Selck, Rustem F Ismagilov, Mitchell Guttman
Single-cell measurement of higher-order 3D genome organization with scSPRITE. Nature biotechnology (2021)
Jacob T Barlow, Gabriela Leite, Anna E Romano, Rashin Sedighi, Christine Chang, Shreya Celly, Ali Rezaie, Ruchi Mathur, Mark Pimentel, Rustem F Ismagilov
Quantitative sequencing clarifies the role of disruptor taxa, oral microbiota, and strict anaerobes in the human small-intestine microbiome. Microbiome 9 (1) (2021)
Alexander Viloria Winnett, Matthew M Cooper, Natasha Shelby, Anna E Romano, Jessica A Reyes, Jenny Ji, Michael K Porter, Emily S Savela, Jacob T Barlow, Reid Akana, Colten Tognazzini, Matthew Feaster, Ying-Ying Goh, Rustem F Ismagilov
SARS-CoV-2 Viral Load in Saliva Rises Gradually and to Moderate Levels in Some Humans. medRxiv : the preprint server for health sciences (2020)
Nathan G Schoepp, Eric J Liaw, Alexander Viloria Winnett, Emily S Savela, Omai B Garner, Rustem F Ismagilov
Differential DNA accessibility to polymerase enables 30-minute phenotypic β-lactam antibiotic susceptibility testing of carbapenem-resistant Enterobacteriaceae. PLoS biology 18 (3) (2020)
Tahmineh Khazaei, Rory L Williams, Said R Bogatyrev, John C Doyle, Christopher S Henry, Rustem F Ismagilov
Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community. Science advances 6 (33) (2020)
Jacob T Barlow, Said R Bogatyrev, Rustem F Ismagilov
A quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities. Nature communications 11 (1) (2020)
Erik Jue, Daan Witters, Rustem F Ismagilov
Two-phase wash to solve the ubiquitous contaminant-carryover problem in commercial nucleic-acid extraction kits. Scientific reports 10 (1) (2020)
Said R Bogatyrev, Justin C Rolando, Rustem F Ismagilov
Self-reinoculation with fecal flora changes microbiota density and composition leading to an altered bile-acid profile in the mouse small intestine. Microbiome 8 (1) (2020)
Roberta Poceviciute, Rustem F Ismagilov
Human-gut-microbiome on a chip. Nature biomedical engineering 3 (7) (2020)
Jacob T Barlow, Said R Bogatyrev, Rustem F Ismagilov
Publisher Correction: A quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities. Nature communications 11 (1) (2020)
Emily S Savela, Nathan G Schoepp, Matthew M Cooper, Justin C Rolando, Jeffrey D Klausner, Olusegun O Soge, Rustem F Ismagilov
Surfactant-enhanced DNA accessibility to nuclease accelerates phenotypic β-lactam antibiotic susceptibility testing of Neisseria gonorrhoeae. PLoS biology 18 (3) (2020)
Mengchao Yu, Xiaoying Chen, Haijun Qu, Liang Ma, Lei Xu, Weiyuan Lv, Hua Wang, Rustem F Ismagilov, Min Li, Feng Shen
Multistep SlipChip for the Generation of Serial Dilution Nanoliter Arrays and Hepatitis B Viral Load Quantification by Digital Loop Mediated Isothermal Amplification. Analytical chemistry 91 (14) (2019)
Michael K Porter, Asher Preska Steinberg, Rustem F Ismagilov
Interplay of motility and polymer-driven depletion forces in the initial stages of bacterial aggregation. Soft matter 15 (35) (2019)
Asher Preska Steinberg, Sujit Sankar Datta, Thomas H Naragon, Justin C Rolando, Said R Bogatyrev, Rustem F Ismagilov
High-molecular-weight polymers from dietary fiber drive aggregation of particulates in the murine small intestine. eLife 8 (2019)
Dmitriy V Zhukov, Eugenia M Khorosheva, Tahmineh Khazaei, Wenbin Du, David A Selck, Alexander A Shishkin, Rustem F Ismagilov
Microfluidic SlipChip device for multistep multiplexed biochemistry on a nanoliter scale. Lab on a chip 19 (19) (2019)
Asher Preska Steinberg, Zhen-Gang Wang, Rustem F Ismagilov
Food Polyelectrolytes Compress the Colonic Mucus Hydrogel by a Donnan Mechanism. Biomacromolecules 20 (7) (2019)
Tahmineh Khazaei, Jacob T Barlow, Nathan G Schoepp, Rustem F Ismagilov
RNA markers enable phenotypic test of antibiotic susceptibility in Neisseria gonorrhoeae after 10 minutes of ciprofloxacin exposure. Scientific reports 8 (1) (2018)
Nathan G Schoepp, Travis S Schlappi, Matthew S Curtis, Slava S Butkovich, Shelley Miller, Romney M Humphries, Rustem F Ismagilov
Rapid pathogen-specific phenotypic antibiotic susceptibility testing using digital LAMP quantification in clinical samples. Science translational medicine 9 (410) (2018)
Justin C Rolando, Erik Jue, Nathan G Schoepp, Rustem F Ismagilov
Real-Time, Digital LAMP with Commercial Microfluidic Chips Reveals the Interplay of Efficiency, Speed, and Background Amplification as a Function of Reaction Temperature and Time. Analytical chemistry 91 (1) (2018)
Sujit S Datta, Asher Preska Steinberg, Rustem F Ismagilov
Polymers in the gut compress the colonic mucus hydrogel. Proceedings of the National Academy of Sciences of the United States of America 113 (26) (2016)
Nathan G Schoepp, Eugenia M Khorosheva, Travis S Schlappi, Matthew S Curtis, Romney M Humphries, Janet A Hindler, Rustem F Ismagilov
Digital Quantification of DNA Replication and Chromosome Segregation Enables Determination of Antimicrobial Susceptibility after only 15 Minutes of Antibiotic Exposure. Angewandte Chemie (International ed. in English) 55 (33) (2016)
David A Selck, Rustem F Ismagilov
Instrument for Real-Time Digital Nucleic Acid Amplification on Custom Microfluidic Devices. PloS one 11 (10) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Rustem F Ismagilov