Saugat Poudel

Publication Activity (10 Years)

Years Active: 2019-2022
Publications (10 Years): 8

Top Topics

Staphylococcus Aureus

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

PLoS computational biology

Scientific data

This page only lists publications with an associated author ORCID identifier.

Publications

Anaëlle Fait, Yara Seif, Kasper Mikkelsen, Saugat Poudel, Jerry M Wells, Bernhard O Palsson, Hanne Ingmer
Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories. Proceedings of the National Academy of Sciences of the United States of America 119 (30) (2022)
Akanksha Rajput, Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M Monk, Bernhard O Palsson
Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens. mSystems 6 (1) (2021)
Donghui Choe, Richard Szubin, Saugat Poudel, Anand V Sastry, Yoseb Song, Yongjae Lee, Suhyung Cho, Bernhard O Palsson, Byung Kwan Cho
RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics. PLoS genetics 17 (9) (2021)
Anand V Sastry, Alyssa Hu, David Heckmann, Saugat Poudel, Erol S Kavvas, Bernhard O Palsson
Independent component analysis recovers consistent regulatory signals from disparate datasets. PLoS computational biology 17 (2) (2021)
Saugat Poudel, Hannah Tsunemoto, Yara Seif, Anand V Sastry, Richard Szubin, Sibei Xu, Henrique Machado, Connor A Olson, Amitesh Anand, Joe Pogliano, Victor Nizet, Bernhard O Palsson
Revealing 29 sets of independently modulated genes in Staphylococcus aureus, their regulators, and role in key physiological response. Proceedings of the National Academy of Sciences of the United States of America 117 (29) (2020)
Akanksha Rajput, Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Rob Knight, Victor Nizet, Bernhard O Palsson, Adam M Feist, Joe Pogliano
Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media. Scientific data 6 (1) (2019)
Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Joseph Pogliano, Rob Knight, Victor Nizet, Bernhard O Palsson, Adam M Feist
Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media. Scientific data 6 (1) (2019)
Yara Seif, Jonathan M Monk, Nathan Mih, Hannah Y Tsunemoto, Saugat Poudel, Cristal Zuñiga, Jared T Broddrick, Karsten Zengler, Bernhard O Palsson
A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types. PLoS computational biology 15 (1) (2019)