Pieter C Dorrestein (P C Dorrestein, Pieter Dorrestein)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 155

Top Venues

Nature microbiology

Nature

Nature communications

Analytical chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Heidi Isokääntä, Lucas Pinto da Silva, Naama Karu, Teemu Kallonen, Anna-Katariina Aatsinki, Thomas Hankemeier, Leyla Schimmel, Edgar Diaz, Tuulia Hyötyläinen, Pieter C Dorrestein, Rob Knight, Matej Orešič, Rima Kaddurah-Daouk, Alex M Dickens, Santosh Lamichhane
Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization. Analytical chemistry (2024)
Bipin Rimal, Stephanie L Collins, Ceylan E Tanes, Edson R Rocha, Megan A Granda, Sumeet Solanki, Nushrat J Hoque, Emily C Gentry, Imhoi Koo, Erin R Reilly, Fuhua Hao, Devendra Paudel, Vishal Singh, Tingting Yan, Min Soo Kim, Kyle Bittinger, Joseph P Zackular, Kristopher W Krausz, Dhimant Desai, Shantu Amin, James P Coleman, Yatrik M Shah, Jordan E Bisanz, Frank J Gonzalez, John P Vanden Heuvel, Gary D Wu, Babette S Zemel, Pieter C Dorrestein, Emily E Weinert, Andrew D Patterson
Bile salt hydrolase catalyses formation of amine-conjugated bile acids. Nature 626 (8000) (2024)
Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andres M Caraballo-Rodriguez, Yasin El Abiead, Allegra T Aron, Emily C Gentry, Jasmine Zemlin, Michael J Meehan, Nicole E Avalon, Robert H Cichewicz, Ekaterina Buzun, Marvic Carrillo Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte C M Kuijpers, Sara L Jackrel, Fidele Tugizimana, Lerato Pertunia Nephali, Ian A Dubery, Ntakadzeni Edwin Madala, Eduarda Antunes Moreira, Leticia Veras Costa-Lotufo, Norberto Peporine Lopes, Paula Rezende-Teixeira, Paula C Jimenez, Bipin Rimal, Andrew D Patterson, Matthew F Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efraín Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Jean Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin S Pullman, Nuno Bandeira, William H Gerwick, Katia Gindro, Josep Massana Codina, Berenike C Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo-Bin Kang, Henna Gadhavi, Luiz Pedro Sorio de Carvalho, Mariana Silva Dos Santos, Alicia Isabel Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Brönstrup, Arturo Vera Ponce de León, Phillip Byron Pope, Sabina Leanti La Rosa, Giorgia La Barbera, Henrik Munch Roager, Martin Frederik Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis Charles O'Neill, Eve Tallulah Roxborough, Jane Odoi, Nicole J Bale, Su Ding, Jaap S Sinninghe Damsté, Xue Li Guan, Jerry J Cui, Kou-San Ju, Denise Brentan Silva, Fernanda Motta Ribeiro Silva, Gilvan Ferreira da Silva, Hector H F Koolen, Carlismari Grundmann, Jason A Clement, Hosein Mohimani, Kirk Broders, Kerry L McPhail, Sidnee E Ober-Singleton, Christopher M Rath, Daniel McDonald, Rob Knight, Mingxun Wang, Pieter C Dorrestein
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data. Nature microbiology 9 (2) (2024)
Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andres M Caraballo-Rodriguez, Yasin El Abiead, Allegra T Aron, Emily C Gentry, Jasmine Zemlin, Michael J Meehan, Nicole E Avalon, Robert H Cichewicz, Ekaterina Buzun, Marvic Carrillo Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte C M Kuijpers, Sara L Jackrel, Fidele Tugizimana, Lerato Pertunia Nephali, Ian A Dubery, Ntakadzeni Edwin Madala, Eduarda Antunes Moreira, Leticia Veras Costa-Lotufo, Norberto Peporine Lopes, Paula Rezende-Teixeira, Paula C Jimenez, Bipin Rimal, Andrew D Patterson, Matthew F Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efraín Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Jean Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin S Pullman, Nuno Bandeira, William H Gerwick, Katia Gindro, Josep Massana Codina, Berenike C Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo-Bin Kang, Henna Gadhavi, Luiz Pedro Sorio de Carvalho, Mariana Silva Dos Santos, Alicia Isabel Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Brönstrup, Arturo Vera Ponce de León, Phillip Byron Pope, Sabina Leanti La Rosa, Giorgia La Barbera, Henrik Munch Roager, Martin Frederik Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis Charles O'Neill, Eve Tallulah Roxborough, Jane Odoi, Nicole J Bale, Su Ding, Jaap S Sinninghe Damsté, Xue Li Guan, Jerry J Cui, Kou-San Ju, Denise Brentan Silva, Fernanda Motta Ribeiro Silva, Gilvan Ferreira da Silva, Hector H F Koolen, Carlismari Grundmann, Jason A Clement, Hosein Mohimani, Kirk Broders, Kerry L McPhail, Sidnee E Ober-Singleton, Christopher M Rath, Daniel McDonald, Rob Knight, Mingxun Wang, Pieter C Dorrestein
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data. Nature microbiology 9 (2) (2024)
Nicole E Avalon, Mariana A Reis, Christopher C Thornburg, Robert Thomas Williamson, Daniel Petras, Allegra T Aron, George F Neuhaus, Momen Al-Hindy, Jana Mitrevska, Leonor Ferreira, João Morais, Yasin El Abiead, Evgenia Glukhov, Kelsey L Alexander, F Alexandra Vulpanovici, Matthew J Bertin, Syrena Whitner, Hyukjae Choi, Gabriella Spengler, Kirill Blinov, Ameen M Almohammadi, Lamiaa A Shaala, William R Kew, Ljiljana Paša-Tolić, Diaa T A Youssef, Pieter C Dorrestein, Vitor Vasconcelos, Lena Gerwick, Kerry L McPhail, William H Gerwick
Leptochelins A-C, Cytotoxic Metallophores Produced by Geographically Dispersed Leptothoe Strains of Marine Cyanobacteria. Journal of the American Chemical Society 146 (27) (2024)
Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andres M Caraballo-Rodriguez, Yasin El Abiead, Allegra T Aron, Emily C Gentry, Jasmine Zemlin, Michael J Meehan, Nicole E Avalon, Robert H Cichewicz, Ekaterina Buzun, Marvic Carrillo Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte C M Kuijpers, Sara L Jackrel, Fidele Tugizimana, Lerato Pertunia Nephali, Ian A Dubery, Ntakadzeni Edwin Madala, Eduarda Antunes Moreira, Leticia Veras Costa-Lotufo, Norberto Peporine Lopes, Paula Rezende-Teixeira, Paula C Jimenez, Bipin Rimal, Andrew D Patterson, Matthew F Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efraín Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Jean Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin S Pullman, Nuno Bandeira, William H Gerwick, Katia Gindro, Josep Massana Codina, Berenike C Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo-Bin Kang, Henna Gadhavi, Luiz Pedro Sorio de Carvalho, Mariana Silva Dos Santos, Alicia Isabel Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Brönstrup, Arturo Vera Ponce de León, Phillip Byron Pope, Sabina Leanti La Rosa, Giorgia La Barbera, Henrik Munch Roager, Martin Frederik Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis Charles O'Neill, Eve Tallulah Roxborough, Jane Odoi, Nicole J Bale, Su Ding, Jaap S Sinninghe Damsté, Xue Li Guan, Jerry J Cui, Kou-San Ju, Denise Brentan Silva, Fernanda Motta Ribeiro Silva, Gilvan Ferreira da Silva, Hector H F Koolen, Carlismari Grundmann, Jason A Clement, Hosein Mohimani, Kirk Broders, Kerry L McPhail, Sidnee E Ober-Singleton, Christopher M Rath, Daniel McDonald, Rob Knight, Mingxun Wang, Pieter C Dorrestein
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data. Nature microbiology (2024)
Nicole E Avalon, Mariana A Reis, Christopher C Thornburg, Robert Thomas Williamson, Daniel Petras, Allegra T Aron, George F Neuhaus, Momen Al-Hindy, Jana Mitrevska, Leonor Ferreira, João Morais, Yasin El Abiead, Evgenia Glukhov, Kelsey L Alexander, F Alexandra Vulpanovici, Matthew J Bertin, Syrena Whitner, Hyukjae Choi, Gabriella Spengler, Kirill Blinov, Ameen M Almohammadi, Lamiaa A Shaala, William R Kew, Ljiljana Paša-Tolić, Diaa T A Youssef, Pieter C Dorrestein, Vitor Vasconcelos, Lena Gerwick, Kerry L McPhail, William H Gerwick
Leptochelins A-C, Cytotoxic Metallophores Produced by Geographically Dispersed Leptothoe Strains of Marine Cyanobacteria. Journal of the American Chemical Society (2024)
Celeste Allaband, Amulya Lingaraju, Stephany Flores Ramos, Tanya Kumar, Haniyeh Javaheri, Maria D Tiu, Ana Carolina Dantas Machado, R Alexander Richter, Emmanuel Elijah, Gabriel G Haddad, Vanessa A Leone, Pieter C Dorrestein, Rob Knight, Amir Zarrinpar
Time of sample collection is critical for the replicability of microbiome analyses. Nature metabolism 6 (7) (2024)
Heidi Isokääntä, Lucas Pinto da Silva, Naama Karu, Teemu Kallonen, Anna-Katariina Aatsinki, Thomas Hankemeier, Leyla Schimmel, Edgar Diaz, Tuulia Hyötyläinen, Pieter C Dorrestein, Rob Knight, Matej Orešič, Rima Kaddurah-Daouk, Alex M Dickens, Santosh Lamichhane
Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization. Analytical chemistry 96 (22) (2024)
Bipin Rimal, Stephanie L Collins, Ceylan E Tanes, Edson R Rocha, Megan A Granda, Sumeet Solanki, Nushrat J Hoque, Emily C Gentry, Imhoi Koo, Erin R Reilly, Fuhua Hao, Devendra Paudel, Vishal Singh, Tingting Yan, Min Soo Kim, Kyle Bittinger, Joseph P Zackular, Kristopher W Krausz, Dhimant Desai, Shantu Amin, James P Coleman, Yatrik M Shah, Jordan E Bisanz, Frank J Gonzalez, John P Vanden Heuvel, Gary D Wu, Babette S Zemel, Pieter C Dorrestein, Emily E Weinert, Andrew D Patterson
Bile salt hydrolase catalyses formation of amine-conjugated bile acids. Nature 626 (8000) (2024)
Chloe Engler Hart, Tobias Kind, Pieter C Dorrestein, David Healey, Daniel Domingo-Fernández
Weighting Low-Intensity MS/MS Ions and m / z Frequency for Spectral Library Annotation. Journal of the American Society for Mass Spectrometry 35 (2) (2024)
Heidi Isokääntä, Lucas Pinto da Silva, Naama Karu, Teemu Kallonen, Anna-Katariina Aatsinki, Thomas Hankemeier, Leyla Schimmel, Edgar Diaz, Tuulia Hyötyläinen, Pieter C Dorrestein, Rob Knight, Matej Orešič, Rima Kaddurah-Daouk, Alex M Dickens, Santosh Lamichhane
Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization. Analytical chemistry 96 (22) (2024)
Celeste Allaband, Amulya Lingaraju, Stephany Flores Ramos, Tanya Kumar, Haniyeh Javaheri, Maria D Tiu, Ana Carolina Dantas Machado, R Alexander Richter, Emmanuel Elijah, Gabriel G Haddad, Vanessa A Leone, Pieter C Dorrestein, Rob Knight, Amir Zarrinpar
Time of sample collection is critical for the replicability of microbiome analyses. Nature metabolism 6 (7) (2024)
Heidi Isokääntä, Lucas Pinto da Silva, Naama Karu, Teemu Kallonen, Anna-Katariina Aatsinki, Thomas Hankemeier, Leyla Schimmel, Edgar Diaz, Tuulia Hyötyläinen, Pieter C Dorrestein, Rob Knight, Matej Orešič, Rima Kaddurah-Daouk, Alex M Dickens, Santosh Lamichhane
Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization. Analytical chemistry 96 (22) (2024)
Nicole E Avalon, Mariana A Reis, Christopher C Thornburg, Robert Thomas Williamson, Daniel Petras, Allegra T Aron, George F Neuhaus, Momen Al-Hindy, Jana Mitrevska, Leonor Ferreira, João Morais, Yasin El Abiead, Evgenia Glukhov, Kelsey L Alexander, F Alexandra Vulpanovici, Matthew J Bertin, Syrena Whitner, Hyukjae Choi, Gabriella Spengler, Kirill Blinov, Ameen M Almohammadi, Lamiaa A Shaala, William R Kew, Ljiljana Paša-Tolić, Diaa T A Youssef, Pieter C Dorrestein, Vitor Vasconcelos, Lena Gerwick, Kerry L McPhail, William H Gerwick
Leptochelins A-C, Cytotoxic Metallophores Produced by Geographically Dispersed Leptothoe Strains of Marine Cyanobacteria. Journal of the American Chemical Society 146 (27) (2024)
Chloe Engler Hart, Tobias Kind, Pieter C Dorrestein, David Healey, Daniel Domingo-Fernández
Weighting Low-Intensity MS/MS Ions and m / z Frequency for Spectral Library Annotation. Journal of the American Society for Mass Spectrometry 35 (2) (2024)
Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andres M Caraballo-Rodriguez, Yasin El Abiead, Allegra T Aron, Emily C Gentry, Jasmine Zemlin, Michael J Meehan, Nicole E Avalon, Robert H Cichewicz, Ekaterina Buzun, Marvic Carrillo Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte C M Kuijpers, Sara L Jackrel, Fidele Tugizimana, Lerato Pertunia Nephali, Ian A Dubery, Ntakadzeni Edwin Madala, Eduarda Antunes Moreira, Leticia Veras Costa-Lotufo, Norberto Peporine Lopes, Paula Rezende-Teixeira, Paula C Jimenez, Bipin Rimal, Andrew D Patterson, Matthew F Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efraín Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Jean Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin S Pullman, Nuno Bandeira, William H Gerwick, Katia Gindro, Josep Massana Codina, Berenike C Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo-Bin Kang, Henna Gadhavi, Luiz Pedro Sorio de Carvalho, Mariana Silva Dos Santos, Alicia Isabel Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Brönstrup, Arturo Vera Ponce de León, Phillip Byron Pope, Sabina Leanti La Rosa, Giorgia La Barbera, Henrik Munch Roager, Martin Frederik Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis Charles O'Neill, Eve Tallulah Roxborough, Jane Odoi, Nicole J Bale, Su Ding, Jaap S Sinninghe Damsté, Xue Li Guan, Jerry J Cui, Kou-San Ju, Denise Brentan Silva, Fernanda Motta Ribeiro Silva, Gilvan Ferreira da Silva, Hector H F Koolen, Carlismari Grundmann, Jason A Clement, Hosein Mohimani, Kirk Broders, Kerry L McPhail, Sidnee E Ober-Singleton, Christopher M Rath, Daniel McDonald, Rob Knight, Mingxun Wang, Pieter C Dorrestein
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data. Nature microbiology 9 (2) (2024)
Zachary M Burcham, Aeriel D Belk, Bridget B McGivern, Amina Bouslimani, Parsa Ghadermazi, Cameron Martino, Liat Shenhav, Anru R Zhang, Pixu Shi, Alexandra Emmons, Heather L Deel, Zhenjiang Zech Xu, Victoria Nieciecki, Qiyun Zhu, Michael Shaffer, Morgan Panitchpakdi, Kelly C Weldon, Kalen Cantrell, Asa Ben-Hur, Sasha C Reed, Greg C Humphry, Gail Ackermann, Daniel McDonald, Siu Hung Joshua Chan, Melissa Connor, Derek Boyd, Jake Smith, Jenna M S Watson, Giovanna Vidoli, Dawnie Wolfe Steadman, Aaron M Lynne, Sibyl Bucheli, Pieter C Dorrestein, Kelly C Wrighton, David O Carter, Rob Knight, Jessica L Metcalf
A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables. Nature microbiology 9 (3) (2024)
Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andres M Caraballo-Rodriguez, Yasin El Abiead, Allegra T Aron, Emily C Gentry, Jasmine Zemlin, Michael J Meehan, Nicole E Avalon, Robert H Cichewicz, Ekaterina Buzun, Marvic Carrillo Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte C M Kuijpers, Sara L Jackrel, Fidele Tugizimana, Lerato Pertunia Nephali, Ian A Dubery, Ntakadzeni Edwin Madala, Eduarda Antunes Moreira, Leticia Veras Costa-Lotufo, Norberto Peporine Lopes, Paula Rezende-Teixeira, Paula C Jimenez, Bipin Rimal, Andrew D Patterson, Matthew F Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efraín Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Jean Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin S Pullman, Nuno Bandeira, William H Gerwick, Katia Gindro, Josep Massana Codina, Berenike C Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo-Bin Kang, Henna Gadhavi, Luiz Pedro Sorio de Carvalho, Mariana Silva Dos Santos, Alicia Isabel Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Brönstrup, Arturo Vera Ponce de León, Phillip Byron Pope, Sabina Leanti La Rosa, Giorgia La Barbera, Henrik Munch Roager, Martin Frederik Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis Charles O'Neill, Eve Tallulah Roxborough, Jane Odoi, Nicole J Bale, Su Ding, Jaap S Sinninghe Damsté, Xue Li Guan, Jerry J Cui, Kou-San Ju, Denise Brentan Silva, Fernanda Motta Ribeiro Silva, Gilvan Ferreira da Silva, Hector H F Koolen, Carlismari Grundmann, Jason A Clement, Hosein Mohimani, Kirk Broders, Kerry L McPhail, Sidnee E Ober-Singleton, Christopher M Rath, Daniel McDonald, Rob Knight, Mingxun Wang, Pieter C Dorrestein
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data. Nature microbiology 9 (2) (2024)
Bipin Rimal, Stephanie L Collins, Ceylan E Tanes, Edson R Rocha, Megan A Granda, Sumeet Solanki, Nushrat J Hoque, Emily C Gentry, Imhoi Koo, Erin R Reilly, Fuhua Hao, Devendra Paudel, Vishal Singh, Tingting Yan, Min Soo Kim, Kyle Bittinger, Joseph P Zackular, Kristopher W Krausz, Dhimant Desai, Shantu Amin, James P Coleman, Yatrik M Shah, Jordan E Bisanz, Frank J Gonzalez, John P Vanden Heuvel, Gary D Wu, Babette S Zemel, Pieter C Dorrestein, Emily E Weinert, Andrew D Patterson
Bile salt hydrolase catalyses formation of amine-conjugated bile acids. Nature 626 (8000) (2024)
Steffen Heuckeroth, Tito Damiani, Aleksandr Smirnov, Olena Mokshyna, Corinna Brungs, Ansgar Korf, Joshua David Smith, Paolo Stincone, Nicola Dreolin, Louis-Felix Nothias, Tuulia Hyötyläinen, Matej Oresic, Uwe Karst, Pieter C Dorrestein, Daniel Petras, Xiuxia Du, Justin Johan Jozias van der Hooft, Robin Schmid, Tomáš Pluskal
Reproducible mass spectrometry data processing and compound annotation in MZmine 3. Nature protocols (2024)
Chloe Engler Hart, Tobias Kind, Pieter C Dorrestein, David Healey, Daniel Domingo-Fernández
Weighting Low-Intensity MS/MS Ions and m / z Frequency for Spectral Library Annotation. Journal of the American Society for Mass Spectrometry 35 (2) (2024)
Bipin Rimal, Stephanie L Collins, Ceylan E Tanes, Edson R Rocha, Megan A Granda, Sumeet Solanki, Nushrat J Hoque, Emily C Gentry, Imhoi Koo, Erin R Reilly, Fuhua Hao, Devendra Paudel, Vishal Singh, Tingting Yan, Min Soo Kim, Kyle Bittinger, Joseph P Zackular, Kristopher W Krausz, Dhimant Desai, Shantu Amin, James P Coleman, Yatrik M Shah, Jordan E Bisanz, Frank J Gonzalez, John P Vanden Heuvel, Gary D Wu, Babette S Zemel, Pieter C Dorrestein, Emily E Weinert, Andrew D Patterson
Bile salt hydrolase catalyses formation of amine-conjugated bile acids. Nature 626 (8000) (2024)
Heidi Isokääntä, Lucas Pinto da Silva, Naama Karu, Teemu Kallonen, Anna-Katariina Aatsinki, Thomas Hankemeier, Leyla Schimmel, Edgar Diaz, Tuulia Hyötyläinen, Pieter C Dorrestein, Rob Knight, Matej Orešič, Rima Kaddurah-Daouk, Alex M Dickens, Santosh Lamichhane
Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization. Analytical chemistry 96 (22) (2024)
Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andres M Caraballo-Rodriguez, Yasin El Abiead, Allegra T Aron, Emily C Gentry, Jasmine Zemlin, Michael J Meehan, Nicole E Avalon, Robert H Cichewicz, Ekaterina Buzun, Marvic Carrillo Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte C M Kuijpers, Sara L Jackrel, Fidele Tugizimana, Lerato Pertunia Nephali, Ian A Dubery, Ntakadzeni Edwin Madala, Eduarda Antunes Moreira, Leticia Veras Costa-Lotufo, Norberto Peporine Lopes, Paula Rezende-Teixeira, Paula C Jimenez, Bipin Rimal, Andrew D Patterson, Matthew F Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efraín Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Jean Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin S Pullman, Nuno Bandeira, William H Gerwick, Katia Gindro, Josep Massana Codina, Berenike C Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo-Bin Kang, Henna Gadhavi, Luiz Pedro Sorio de Carvalho, Mariana Silva Dos Santos, Alicia Isabel Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Brönstrup, Arturo Vera Ponce de León, Phillip Byron Pope, Sabina Leanti La Rosa, Giorgia La Barbera, Henrik Munch Roager, Martin Frederik Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis Charles O'Neill, Eve Tallulah Roxborough, Jane Odoi, Nicole J Bale, Su Ding, Jaap S Sinninghe Damsté, Xue Li Guan, Jerry J Cui, Kou-San Ju, Denise Brentan Silva, Fernanda Motta Ribeiro Silva, Gilvan Ferreira da Silva, Hector H F Koolen, Carlismari Grundmann, Jason A Clement, Hosein Mohimani, Kirk Broders, Kerry L McPhail, Sidnee E Ober-Singleton, Christopher M Rath, Daniel McDonald, Rob Knight, Mingxun Wang, Pieter C Dorrestein
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data. Nature microbiology 9 (2) (2024)
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Wout Bittremieux, Lev I Levitsky, Matteo Pilz, Timo Sachsenberg, Florian Huber, Mingxun Wang, Pieter C Dorrestein
Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils. Journal of proteome research 22 (2) (2023)
Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender Portal Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo-Bin Kang, Hyun Woo Kim, Todor Kondić, Helena M Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin Johan Jozias van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C Dorrestein
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature communications 14 (1) (2023)
Matthew H Foley, Morgan E Gibbs, Allison K Stewart, Sarah O'Flaherty, Emily C Gentry, Shakshi Patel, Violet V Beaty, Garrison Allen, Meichen Pan, Joshua B Simpson, Caroline Perkins, Molly E Vanhoy, Michael K Dougherty, Sarah K McGill, Ajay S Gulati, Pieter C Dorrestein, Erin S Baker, Matthew R Redinbo, Rodolphe Barrangou, Casey M Theriot
Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut. Nature microbiology (2023)
Matthew A Pendergraft, Pedro Belda-Ferre, Daniel Petras, Clare K Morris, Brock A Mitts, Allegra T Aron, MacKenzie Bryant, Tara Schwartz, Gail Ackermann, Greg Humphrey, Ethan Kaandorp, Pieter C Dorrestein, Rob Knight, Kimberly A Prather
Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol. Environmental science & technology 57 (10) (2023)
Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender Portal Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo-Bin Kang, Hyun Woo Kim, Todor Kondić, Helena M Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin Johan Jozias van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C Dorrestein
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature communications 14 (1) (2023)
Abhinav Srinath, Bingqing Xie, Ying Li, Je Yeong Sone, Sharbel Romanos, Chang Chen, Anukriti Sharma, Sean P Polster, Pieter C Dorrestein, Kelly C Weldon, Dorothy DeBiasse, Thomas Moore, Rhonda Lightle, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Kristina Piedad, Matthew J Hagan, Abdallah Shkoukani, Julián Carrión-Penagos, Dehua Bi, Le Shen, Robert Shenkar, Yuan Ji, Ashley Sidebottom, Eric G Pamer, Jack A Gilbert, Mark L Kahn, Mark D'Souza, Dinanath Sulakhe, Issam A Awad, Romuald Girard
Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma. Communications medicine 3 (1) (2023)
Matthew A Pendergraft, Pedro Belda-Ferre, Daniel Petras, Clare K Morris, Brock A Mitts, Allegra T Aron, MacKenzie Bryant, Tara Schwartz, Gail Ackermann, Greg Humphrey, Ethan Kaandorp, Pieter C Dorrestein, Rob Knight, Kimberly A Prather
Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol. Environmental science & technology 57 (10) (2023)
Wout Bittremieux, Lev I Levitsky, Matteo Pilz, Timo Sachsenberg, Florian Huber, Mingxun Wang, Pieter C Dorrestein
Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils. Journal of proteome research (2023)
Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender Portal Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo-Bin Kang, Hyun Woo Kim, Todor Kondić, Helena M Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin Johan Jozias van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C Dorrestein
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature communications 14 (1) (2023)
Ana Carolina Dantas Machado, Stephany Flores Ramos, Julia M Gauglitz, Anne-Marie Fassler, Daniel Petras, Alexander A Aksenov, Un Bi Kim, Michael Lazarowicz, Abbey Barnard Giustini, Hamed Aryafar, Irine Vodkin, Curtis Warren, Pieter C Dorrestein, Ali Zarrinpar, Amir Zarrinpar
Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry. Nature communications 14 (1) (2023)
Helena M Russo, Sean O I Swift, Kirsten K Nakayama, Christopher B Wall, Emily C Gentry, Morgan Panitchpakdi, Andrés M Caraballo-Rodriguez, Allegra T Aron, Daniel Petras, Kathleen Dorrestein, Tatiana K Dorrestein, Taylor M Williams, Eileen M Nalley, Noam T Altman-Kurosaki, Mike Martinelli, Jeff Y Kuwabara, John L Darcy, Vanderlan S Bolzani, Linda Wegley Kelly, Camilo Mora, Joanne Y Yew, Anthony S Amend, Margaret J McFall-Ngai, Nicole A Hynson, Pieter C Dorrestein, Craig E Nelson
Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses. Communications biology 6 (1) (2023)
Abhinav Srinath, Bingqing Xie, Ying Li, Je Yeong Sone, Sharbel Romanos, Chang Chen, Anukriti Sharma, Sean P Polster, Pieter C Dorrestein, Kelly C Weldon, Dorothy DeBiasse, Thomas Moore, Rhonda Lightle, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Kristina Piedad, Matthew J Hagan, Abdallah Shkoukani, Julián Carrión-Penagos, Dehua Bi, Le Shen, Robert Shenkar, Yuan Ji, Ashley Sidebottom, Eric G Pamer, Jack A Gilbert, Mark L Kahn, Mark D'Souza, Dinanath Sulakhe, Issam A Awad, Romuald Girard
Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma. Communications medicine 3 (1) (2023)
Wout Bittremieux, Lev I Levitsky, Matteo Pilz, Timo Sachsenberg, Florian Huber, Mingxun Wang, Pieter C Dorrestein
Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils. Journal of proteome research 22 (2) (2023)
Matthew A Pendergraft, Pedro Belda-Ferre, Daniel Petras, Clare K Morris, Brock A Mitts, Allegra T Aron, MacKenzie Bryant, Tara Schwartz, Gail Ackermann, Greg Humphrey, Ethan Kaandorp, Pieter C Dorrestein, Rob Knight, Kimberly A Prather
Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol. Environmental science & technology 57 (10) (2023)
Matthew A Pendergraft, Pedro Belda-Ferre, Daniel Petras, Clare K Morris, Brock A Mitts, Allegra T Aron, MacKenzie Bryant, Tara Schwartz, Gail Ackermann, Greg Humphrey, Ethan Kaandorp, Pieter C Dorrestein, Rob Knight, Kimberly A Prather
Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol. Environmental science & technology 57 (10) (2023)
Robin Schmid, Steffen Heuckeroth, Ansgar Korf, Aleksandr Smirnov, Owen Myers, Thomas S Dyrlund, Roman Bushuiev, Kevin J Murray, Nils Hoffmann, Miaoshan Lu, Abinesh Sarvepalli, Zheng Zhang, Markus Fleischauer, Kai Dührkop, Mark Wesner, Shawn J Hoogstra, Edward Rudt, Olena Mokshyna, Corinna Brungs, Kirill Ponomarov, Lana Mutabdžija, Tito Damiani, Chris J Pudney, Mark Earll, Patrick O Helmer, Timothy R Fallon, Tobias Schulze, Albert Rivas-Ubach, Aivett Bilbao, Henning Richter, Louis-Felix Nothias, Mingxun Wang, Matej Oresic, Jing-Ke Weng, Sebastian Böcker, Astrid Jeibmann, Heiko Hayen, Uwe Karst, Pieter C Dorrestein, Daniel Petras, Xiuxia Du, Tomáš Pluskal
Integrative analysis of multimodal mass spectrometry data in MZmine 3. Nature biotechnology (2023)
Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender Portal Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo-Bin Kang, Hyun Woo Kim, Todor Kondić, Helena M Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin Johan Jozias van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C Dorrestein
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature communications 14 (1) (2023)
Emily C Gentry, Stephanie L Collins, Morgan Panitchpakdi, Pedro Belda Ferre, Allison K Stewart, Marvic Carrillo Terrazas, Hsueh-Han Lu, Simone Zuffa, Tingting Yan, Julian Avila Pacheco, Damian Rafal Plichta, Allegra T Aron, Mingxun Wang, Alan K Jarmusch, Fuhua Hao, Mashette Syrkin-Nikolau, Hera Vlamakis, Ashwin N Ananthakrishnan, Brigid Boland, Amy Hemperly, Niels Vande Casteele, Frank J Gonzalez, Andrew T Chan, Ramnik J Xavier, Hiutung Chu, Erin S Baker, Andrew D Patterson, Rob Knight, Dionicio Siegel, Pieter C Dorrestein
Reverse metabolomics for the discovery of chemical structures from humans. Nature (2023)
María Victoria Berlanga-Clavero, Carlos Molina-Santiago, Andrés Mauricio Caraballo-Rodriguez, Daniel Petras, L Díaz-Martínez, A Pérez-García, Antonio de Vicente, V J Carrión, Pieter C Dorrestein, Diego Romero
Bacillus subtilis biofilm matrix components target seed oil bodies to promote growth and anti-fungal resistance in melon. Nature microbiology 7 (7) (2022)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Daniel G C Treen, Mingxun Wang, Shipei Xing, Katherine B Louie, Tao Huan, Pieter C Dorrestein, Trent R Northen, Benjamin P Bowen
SIMILE enables alignment of tandem mass spectra with statistical significance. Nature communications 13 (1) (2022)
Alexander A Aksenov, Rodolfo A Salido, Alexey V Melnik, Caitriona Brennan, Asker Brejnrod, Andrés Mauricio Caraballo-Rodriguez, Julia M Gauglitz, Franck Lejzerowicz, Delphine K Farmer, Marina E Vance, Rob Knight, Pieter C Dorrestein
The molecular impact of life in an indoor environment. Science advances 8 (25) (2022)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Jun Sang Yu, Louis-Félix Nothias, Mingxun Wang, Dong Hyun Kim, Pieter C Dorrestein, Kyo-Bin Kang, Hye-Hyun Yoo
Tandem Mass Spectrometry Molecular Networking as a Powerful and Efficient Tool for Drug Metabolism Studies. Analytical chemistry 94 (2) (2022)
Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J Meehan, Kathleen Dorrestein, Justin P Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J Johnson, Katharina Spengler, Pedro Belda Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O Elijah, Mingxun Wang, Clarisse Marotz, Kate E Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira da Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H Mills, Paulina K Piotrowski, Stephanie L Servetas, Sandra M Da Silva, Christina M Jones, Nancy J Lin, Katrice A Lippa, Scott A Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S Dulai, Tatyana I Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M Doty, Jae H Kim, David J Gonzalez, Julia Beauchamp-Walters, Kenneth P Wright, Maria Gloria Dominguez Bello, Mark Manary, Michelli F Oliveira, Brigid S Boland, Norberto Peporine Lopes, Monica Guma, Austin D Swafford, Rachel J Dutton, Rob Knight, Pieter C Dorrestein
Enhancing untargeted metabolomics using metadata-based source annotation. Nature biotechnology (2022)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Raphael Reher, Allegra T Aron, Pavla Fajtová, Paolo Stincone, Berenike Wagner, Alicia I Pérez-Lorente, Chenxi Liu, Ido Y Ben Shalom, Wout Bittremieux, Mingxun Wang, Kyowon Jeong, Marie L Matos-Hernández, Kelsey L Alexander, Eduardo J E Caro-Diaz, C Benjamin Naman, J H William Scanlan, Phil M M Hochban, Wibke E Diederich, Carlos Molina-Santiago, Diego Romero, Khaled A Selim, Peter Sass, Heike Brötz-Oesterhelt, Chambers C Hughes, Pieter C Dorrestein, Anthony J O'Donoghue, William H Gerwick, Daniel Petras
Native metabolomics identifies the rivulariapeptolide family of protease inhibitors. Nature communications 13 (1) (2022)
Carsten Simon, Kai Dührkop, Daniel Petras, Vanessa-Nina Roth, Sebastian Böcker, Pieter C Dorrestein, Gerd Gleixner
Mass Difference Matching Unfolds Hidden Molecular Structures of Dissolved Organic Matter. Environmental science & technology 56 (15) (2022)
Stephanie B Orchanian, Julia M Gauglitz, Stephen Wandro, Kelly C Weldon, Megan M Doty, Kristina Stillwell, Shalisa Hansen, Lingjing Jiang, Fernando Vargas, Kyung E Rhee, Julie C Lumeng, Pieter C Dorrestein, Rob Knight, Jae H Kim, Se Jin Song, Austin D Swafford
Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention. Advanced biology 6 (8) (2022)
Kiana A West, Robin Schmid, Julia M Gauglitz, Mingxun Wang, Pieter C Dorrestein
foodMASST a mass spectrometry search tool for foods and beverages. NPJ science of food 6 (1) (2022)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Sydney P Thomas, Erce Denizer, Simone Zuffa, Brookie M Best, Lars Bode, Christina D Chambers, Pieter C Dorrestein, George Y Liu, Jeremiah D Momper, Victor Nizet, Shirley M Tsunoda, Adriana H Tremoulet
Transfer of antibiotics and their metabolites in human milk: Implications for infant health and microbiota. Pharmacotherapy (2022)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Tiago F Leão, Mingxun Wang, Ricardo R da Silva, Alexey Gurevich, Anelize Bauermeister, Paulo Wender Portal Gomes, Asker Daniel Brejnrod, Evgenia Glukhov, Allegra T Aron, Joris J R Louwen, Hyun Woo Kim, Raphael Reher, Marli Fatima Fiore, Justin Johan Jozias van der Hooft, Lena Gerwick, William H Gerwick, Nuno Bandeira, Pieter C Dorrestein
NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters. PNAS nexus 1 (5) (2022)
Arnaud Taton, Sebastian Rohrer, Brienna Diaz, Raphael Reher, Andres Mauricio Caraballo Rodriguez, Marsha L Pierce, Pieter C Dorrestein, Lena Gerwick, William H Gerwick, James W Golden
Heterologous Expression in Anabaena of the Columbamide Pathway from the Cyanobacterium Moorena bouillonii and Production of New Analogs. ACS chemical biology 17 (7) (2022)
Robert H Mills, Parambir S Dulai, Yoshiki Vázquez-Baeza, Consuelo Sauceda, Noëmie Daniel, Romana Raphaela Gerner, Lakshmi E Batachari, Mario Malfavon, Qiyun Zhu, Kelly C Weldon, Greg Humphrey, Marvic Carrillo-Terrazas, Lindsay DeRight Goldasich, MacKenzie Bryant, Manuela Raffatellu, Robert A Quinn, Andrew T Gewirtz, Benoit Chassaing, Hiutung Chu, William J Sandborn, Pieter C Dorrestein, Rob Knight, David J Gonzalez
Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity. Nature microbiology 7 (2) (2022)
Justin P Shaffer, Louis-Felix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido, Sneha P Couvillion, Asker D Brejnrod, Franck Lejzerowicz, Niina Haiminen, Shi Huang, Holly L Lutz, Qiyun Zhu, Cameron Martino, James T Morton, Smruthi Karthikeyan, Mélissa Nothias-Esposito, Kai Dührkop, Sebastian Böcker, Hyun Woo Kim, Alexander A Aksenov, Wout Bittremieux, Jeremiah J Minich, Clarisse Marotz, MacKenzie M Bryant, Karenina Sanders, Tara Schwartz, Greg Humphrey, Yoshiki Vásquez-Baeza, Anupriya Tripathi, Laxmi Parida, Anna Paola Carrieri, Kristen L Beck, Promi Das, Antonio González, Daniel McDonald, Joshua Ladau, Søren M Karst, Mads Albertsen, Gail Ackermann, Jeff DeReus, Torsten Thomas, Daniel Petras, Ashley Shade, James Stegen, Se Jin Song, Thomas O Metz, Austin D Swafford, Pieter C Dorrestein, Janet K Jansson, Jack A Gilbert, Rob Knight, null null
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity. Nature microbiology 7 (12) (2022)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Tiago F Leão, Mingxun Wang, Ricardo R da Silva, Alexey Gurevich, Anelize Bauermeister, Paulo Wender Portal Gomes, Asker Daniel Brejnrod, Evgenia Glukhov, Allegra T Aron, Joris J R Louwen, Hyun Woo Kim, Raphael Reher, Marli Fatima Fiore, Justin Johan Jozias van der Hooft, Lena Gerwick, William H Gerwick, Nuno Bandeira, Pieter C Dorrestein
NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters. PNAS nexus 1 (5) (2022)
Allegra T Aron, Daniel Petras, Robin Schmid, Julia M Gauglitz, Isabell Büttel, Luis Antelo, Hui Zhi, Sean-Paul Nuccio, Christina C Saak, Kien P Malarney, Eckhard Thines, Rachel J Dutton, Lihini I Aluwihare, Manuela Raffatellu, Pieter C Dorrestein
Native mass spectrometry-based metabolomics identifies metal-binding compounds. Nature chemistry (2021)
Wout Bittremieux, Charlotte Adams, Kris Laukens, Pieter C Dorrestein, Nuno Bandeira
Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2. Journal of proteome research 20 (3) (2021)

Pieter C Dorrestein.css-eqlu8i{font-size:small;padding-left:4px;} (P C Dorrestein, Pieter Dorrestein)

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Pieter C Dorrestein (P C Dorrestein, Pieter Dorrestein)