Scott A Handley

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 26

Top Topics

Monoclonal Antibody

Top Venues

Science (New York, N.Y.)

Microbiology spectrum

The Journal of experimental medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Michael J Roach, Sarah Jane Beecroft, Kathie A Mihindukulasuriya, Leran Wang, Anne Paredes, Luis Alberto Chica Cárdenas, Kara Henry-Cocks, Lais Farias Oliveira Lima, Elizabeth A Dinsdale, Robert A Edwards, Scott A Handley
Hecatomb: an integrated software platform for viral metagenomics. GigaScience 13 (2024)
Muntsa Rocafort, David B Gootenberg, Jesús M Luévano, Jeffrey M Paer, Matthew R Hayward, Juliet T Bramante, Musie S Ghebremichael, Jiawu Xu, Zoe H Rogers, Alexander R Munoz, Samson Okello, June-Ho Kim, Ruth Sentongo, Robert Wagubi, Alexander J Lankowski, Segametsi Maruapula, Guoyan Zhao, Scott A Handley, Mosepele Mosepele, Mark J Siedner, Douglas S Kwon
HIV-associated gut microbial alterations are dependent on host and geographic context. Nature communications 15 (1) (2024)
Ana Jung, Lindsay Droit, Binita Febles, Catarina Fronick, Lisa Cook, Scott A Handley, Bijal A Parikh, David Wang
Tracking the prevalence and emergence of SARS-CoV-2 variants of concern using a regional genomic surveillance program. Microbiology spectrum (2024)
Michael J Roach, Sarah Jane Beecroft, Kathie A Mihindukulasuriya, Leran Wang, Anne Paredes, Luis Alberto Chica Cárdenas, Kara Henry-Cocks, Lais Farias Oliveira Lima, Elizabeth A Dinsdale, Robert A Edwards, Scott A Handley
Hecatomb: an integrated software platform for viral metagenomics. GigaScience 13 (2024)
Muntsa Rocafort, David B Gootenberg, Jesús M Luévano, Jeffrey M Paer, Matthew R Hayward, Juliet T Bramante, Musie S Ghebremichael, Jiawu Xu, Zoe H Rogers, Alexander R Munoz, Samson Okello, June-Ho Kim, Ruth Sentongo, Robert Wagubi, Alexander J Lankowski, Segametsi Maruapula, Guoyan Zhao, Scott A Handley, Mosepele Mosepele, Mark J Siedner, Douglas S Kwon
HIV-associated gut microbial alterations are dependent on host and geographic context. Nature communications 15 (1) (2024)
Ana Jung, Lindsay Droit, Binita Febles, Catarina Fronick, Lisa Cook, Scott A Handley, Bijal A Parikh, David Wang
Tracking the prevalence and emergence of SARS-CoV-2 variants of concern using a regional genomic surveillance program. Microbiology spectrum 12 (8) (2024)
Michael J Roach, Sarah Jane Beecroft, Kathie A Mihindukulasuriya, Leran Wang, Anne Paredes, Luis Alberto Chica Cárdenas, Kara Henry-Cocks, Lais Farias Oliveira Lima, Elizabeth A Dinsdale, Robert A Edwards, Scott A Handley
Hecatomb: an integrated software platform for viral metagenomics. GigaScience 13 (2024)
Michael J Roach, Sarah Jane Beecroft, Kathie A Mihindukulasuriya, Leran Wang, Anne Paredes, Luis Alberto Chica Cárdenas, Kara Henry-Cocks, Lais Farias Oliveira Lima, Elizabeth A Dinsdale, Robert A Edwards, Scott A Handley
Hecatomb: an integrated software platform for viral metagenomics. GigaScience 13 (2024)
Yael Alippe, Leran Wang, Reyan Coskun, Stefanie Primon Muraro, Fang R Zhao, Michelle Elam-Noll, J Michael White, Daiana M Vota, Vanesa C Hauk, Jeffrey I Gordon, Scott A Handley, Michael S. Diamond
Fetal MAVS and type I IFN signaling pathways control ZIKV infection in the placenta and maternal decidua. The Journal of experimental medicine 221 (9) (2024)
Yael Alippe, Leran Wang, Reyan Coskun, Stefanie Primon Muraro, Fang R Zhao, Michelle Elam-Noll, J Michael White, Daiana M Vota, Vanesa C Hauk, Jeffrey I Gordon, Scott A Handley, Michael S. Diamond
Fetal MAVS and type I IFN signaling pathways control ZIKV infection in the placenta and maternal decidua. The Journal of experimental medicine 221 (9) (2024)
Muntsa Rocafort, David B Gootenberg, Jesús M Luévano, Jeffrey M Paer, Matthew R Hayward, Juliet T Bramante, Musie S Ghebremichael, Jiawu Xu, Zoe H Rogers, Alexander R Munoz, Samson Okello, June-Ho Kim, Ruth Sentongo, Robert Wagubi, Alexander J Lankowski, Segametsi Maruapula, Guoyan Zhao, Scott A Handley, Mosepele Mosepele, Mark J Siedner, Douglas S Kwon
HIV-associated gut microbial alterations are dependent on host and geographic context. Nature communications 15 (1) (2024)
Ana Jung, Lindsay Droit, Binita Febles, Catarina Fronick, Lisa Cook, Scott A Handley, Bijal A Parikh, David Wang
Tracking the prevalence and emergence of SARS-CoV-2 variants of concern using a regional genomic surveillance program. Microbiology spectrum (2024)
Ana Jung, Lindsay Droit, Binita Febles, Catarina Fronick, Lisa Cook, Scott A Handley, Bijal A Parikh, David Wang
Tracking the prevalence and emergence of SARS-CoV-2 variants of concern using a regional genomic surveillance program. Microbiology spectrum (2024)
Yael Alippe, Leran Wang, Reyan Coskun, Stefanie Primon Muraro, Fang R Zhao, Michelle Elam-Noll, J Michael White, Daiana M Vota, Vanesa C Hauk, Jeffrey I Gordon, Scott A Handley, Michael S. Diamond
Fetal MAVS and type I IFN signaling pathways control ZIKV infection in the placenta and maternal decidua. The Journal of experimental medicine 221 (9) (2024)
Dong-Oh Seo, David O'Donnell, Nimansha Jain, Jason D Ulrich, Jasmin Herz, Yuhao Li, Mackenzie E Lemieux, Jiye Cheng, Hao Hu, Javier Remolina Serrano, Xin Bao, Emily Franke, Maria Karlsson, Martin Meier, Su Deng, Chandani Desai, Hemraj B Dodiya, Janaki Lelwala-Guruge, Scott A Handley, Jonathan Kipnis, Sangram S Sisodia, Jeffrey I Gordon, David M Holtzman
ApoE isoform- and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy. Science (New York, N.Y.) 379 (6628) (2023)
Dong-Oh Seo, David O'Donnell, Nimansha Jain, Jason D Ulrich, Jasmin Herz, Yuhao Li, Mackenzie E Lemieux, Jiye Cheng, Hao Hu, Javier Remolina Serrano, Xin Bao, Emily Franke, Maria Karlsson, Martin Meier, Su Deng, Chandani Desai, Hemraj B Dodiya, Janaki Lelwala-Guruge, Scott A Handley, Jonathan Kipnis, Sangram S Sisodia, Jeffrey I Gordon, David M Holtzman
ApoE isoform- and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy. Science (New York, N.Y.) 379 (6628) (2023)
Dong-Oh Seo, David O'Donnell, Nimansha Jain, Jason D Ulrich, Jasmin Herz, Yuhao Li, Mackenzie E Lemieux, Jiye Cheng, Hao Hu, Javier Remolina Serrano, Xin Bao, Emily Franke, Maria Karlsson, Martin Meier, Su Deng, Chandani Desai, Hemraj B Dodiya, Janaki Lelwala-Guruge, Scott A Handley, Jonathan Kipnis, Sangram S Sisodia, Jeffrey I Gordon, David M Holtzman
ApoE isoform- and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy. Science (New York, N.Y.) 379 (6628) (2023)
Dong-Oh Seo, David O'Donnell, Nimansha Jain, Jason D Ulrich, Jasmin Herz, Yuhao Li, Mackenzie E Lemieux, Jiye Cheng, Hao Hu, Javier Remolina Serrano, Xin Bao, Emily Franke, Maria Karlsson, Martin Meier, Su Deng, Chandani Desai, Hemraj B Dodiya, Janaki Lelwala-Guruge, Scott A Handley, Jonathan Kipnis, Sangram S Sisodia, Jeffrey I Gordon, David M Holtzman
ApoE isoform- and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy. Science (New York, N.Y.) 379 (6628) (2023)
Dong-Oh Seo, David O'Donnell, Nimansha Jain, Jason D Ulrich, Jasmin Herz, Yuhao Li, Mackenzie E Lemieux, Jiye Cheng, Hao Hu, Javier Remolina Serrano, Xin Bao, Emily Franke, Maria Karlsson, Martin Meier, Su Deng, Chandani Desai, Hemraj B Dodiya, Janaki Lelwala-Guruge, Scott A Handley, Jonathan Kipnis, Sangram S Sisodia, Jeffrey I Gordon, David M Holtzman
ApoE isoform- and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy. Science (New York, N.Y.) 379 (6628) (2023)
Dong-Oh Seo, David O'Donnell, Nimansha Jain, Jason D Ulrich, Jasmin Herz, Yuhao Li, Mackenzie E Lemieux, Jiye Cheng, Hao Hu, Javier Remolina Serrano, Xin Bao, Emily Franke, Maria Karlsson, Martin Meier, Su Deng, Chandani Desai, Hemraj B Dodiya, Janaki Lelwala-Guruge, Scott A Handley, Jonathan Kipnis, Sangram S Sisodia, Jeffrey I Gordon, David M Holtzman
ApoE isoform- and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy. Science (New York, N.Y.) 379 (6628) (2023)
Dong-Oh Seo, David O'Donnell, Nimansha Jain, Jason D Ulrich, Jasmin Herz, Yuhao Li, Mackenzie E Lemieux, Jiye Cheng, Hao Hu, Javier Remolina Serrano, Xin Bao, Emily Franke, Maria Karlsson, Martin Meier, Su Deng, Chandani Desai, Hemraj B Dodiya, Janaki Lelwala-Guruge, Scott A Handley, Jonathan Kipnis, Sangram S Sisodia, Jeffrey I Gordon, David M Holtzman
ApoE isoform- and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy. Science (New York, N.Y.) 379 (6628) (2023)
Natasha M Kafai, Lauren E Williamson, Elad M Binshtein, Soila Sukupolvi-Petty, Christina L Gardner, Jaclyn Liu, Samantha R Mackin, Arthur S Kim, Nurgun Kose, Robert H Carnahan, Ana Jung, Lindsay Droit, Douglas S Reed, Scott A Handley, William B Klimstra, James E Crowe, Michael S Diamond
Neutralizing antibodies protect mice against Venezuelan equine encephalitis virus aerosol challenge. The Journal of experimental medicine 219 (4) (2022)
James Brett Case, Samantha Mackin, John M Errico, Zhenlu Chong, Emily A Madden, Bradley Whitener, Barbara Guarino, Michael Alexander Schmid, Kim Rosenthal, Kuishu Ren, Ha V Dang, Gyorgy Snell, Ana Jung, Lindsay Droit, Scott A Handley, Peter J Halfmann, Yoshihiro Kawaoka, James E Crowe, Daved H Fremont, Herbert W Virgin, Yueh-Ming Loo, Mark T Esser, Lisa A Purcell, Davide Corti, Michael S. Diamond
Resilience of S309 and AZD7442 monoclonal antibody treatments against infection by SARS-CoV-2 Omicron lineage strains. Nature communications 13 (1) (2022)
Fatemeh Adiliaghdam, Hajera Amatullah, Sreehaas Digumarthi, Tahnee L Saunders, Raza-Ur Rahman, Lai Ping Wong, Ruslan Sadreyev, Lindsay Droit, Jean Paquette, Philippe Goyette, John D Rioux, Richard Hodin, Kathie A Mihindukulasuriya, Scott A Handley, Kate L Jeffrey
Human enteric viruses autonomously shape inflammatory bowel disease phenotype through divergent innate immunomodulation. Science immunology 7 (70) (2022)
Dale R Balce, Ya-Ting Wang, Michael R McAllaster, Bria F Dunlap, Anthony Orvedahl, Barry L Hykes, Lindsay Droit, Scott A Handley, Craig B Wilen, John G Doench, Robert C Orchard, Christina L Stallings, Herbert W Virgin
UFMylation inhibits the proinflammatory capacity of interferon-γ-activated macrophages. Proceedings of the National Academy of Sciences of the United States of America 118 (1) (2021)
Craig B Wilen, Sanghyun Lee, Leon L Hsieh, Robert C Orchard, Chandani Desai, Barry L Hykes, Michael R McAllaster, Dale R Balce, Taylor Feehley, Jonathan Robert Brestoff, Christina A Hickey, Christine C Yokoyama, Ya Ting Wang, Donna A MacDuff, Darren Kreamalmayer, Michael R Howitt, Jessica A Neil, Ken H Cadwell, Paul M Allen, Scott A Handley, Menno van Lookeren Campagne, Megan T Baldridge, Herbert W Virgin
Tropism for tuft cells determines immune promotion of norovirus pathogenesis. Science (New York, N.Y.) 360 (6385) (2018)