Shaojie Zhang

ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 33

Top Venues

bioRxiv : the preprint server for biology

EMBO reports

GigaScience

Genome research

University of Central Florida

University of California, San Diego (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Central Florida

United States

Associate Professor :: Computer Science

Education History

University of California, San Diego

United States

PHD

Publications

Ardalan Naseri, William Yue, Shaojie Zhang, Degui Zhi
FastRecomb: Fast inference of genetic recombination rates in biobank scale data. bioRxiv : the preprint server for biology (2023)
Ardalan Naseri, William Yue, Shaojie Zhang, Degui Zhi
FastRecomb: Fast inference of genetic recombination rates in biobank scale data. bioRxiv : the preprint server for biology (2023)
Md Mahfuzur Rahaman, Nabila Shahnaz Khan, Shaojie Zhang
RNAMotifComp: a comprehensive method to analyze and identify structurally similar RNA motif families. Bioinformatics (Oxford, England) 39 (39 Suppl 1) (2023)
Xiaoli Chen, Shaojie Zhang
CircularSTAR3D: a stack-based RNA 3D structural alignment tool for circular matching. Nucleic acids research (2023)
Ahsan Sanaullah, Degui Zhi, Shaojie Zhang
Minimal Positional Substring Cover: A Haplotype Threading Alternative to Li & Stephens Model. bioRxiv : the preprint server for biology (2023)
Yuan Wei, Degui Zhi, Shaojie Zhang
Fast and accurate local ancestry inference with Recomb-Mix. bioRxiv : the preprint server for biology (2023)
Ahsan Sanaullah, Degui Zhi, Shaojie Zhang
Minimal positional substring cover is a haplotype threading alternative to Li and Stephens Model. Genome research (2023)
Ardalan Naseri, William Yue, Shaojie Zhang, Degui Zhi
FastRecomb: Fast inference of genetic recombination rates in biobank scale data. bioRxiv : the preprint server for biology (2023)
Ardalan Naseri, William Yue, Shaojie Zhang, Degui Zhi
Fast inference of genetic recombination rates in biobank scale data. Genome research (2023)
Ahsan Sanaullah, Degui Zhi, Shaojie Zhang
Minimal Positional Substring Cover: A Haplotype Threading Alternative to Li & Stephens Model. bioRxiv : the preprint server for biology (2023)
Ahsan Sanaullah, Degui Zhi, Shaojie Zhang
Minimal Positional Substring Cover: A Haplotype Threading Alternative to Li & Stephens Model. bioRxiv : the preprint server for biology (2023)
Nabila Shahnaz Khan, Md Mahfuzur Rahaman, Shahidul Islam, Shaojie Zhang
RNA-NRD: a non-redundant RNA structural dataset for benchmarking and functional analysis. NAR genomics and bioinformatics 5 (2) (2023)
Nabila Shahnaz Khan, Md Mahfuzur Rahaman, Shahidul Islam, Shaojie Zhang
RNA-NRD: a non-redundant RNA structural dataset for benchmarking and functional analysis. NAR genomics and bioinformatics 5 (2) (2023)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
Qiuying Liu, Mariah K Novak, Rachel M Pepin, Katharine R Maschhoff, Kailey Worner, Xiaoli Chen, Shaojie Zhang, Wenqian Hu
A congenital hydrocephalus-causing mutation in Trim71 induces stem cell defects via inhibiting Lsd1 mRNA translation. EMBO reports 24 (2) (2022)
William Yue, Ardalan Naseri, Victor Wang, Pramesh Shakya, Shaojie Zhang, Degui Zhi
P-smoother: efficient PBWT smoothing of large haplotype panels. Bioinformatics advances 2 (1) (2022)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
Qiuying Liu, Mariah K Novak, Rachel M Pepin, Katharine R Maschhoff, Kailey Worner, Xiaoli Chen, Shaojie Zhang, Wenqian Hu
A congenital hydrocephalus-causing mutation in Trim71 induces stem cell defects via inhibiting Lsd1 mRNA translation. EMBO reports 24 (2) (2022)
Qiuying Liu, Mariah K Novak, Rachel M Pepin, Katharine R Maschhoff, Kailey Worner, Xiaoli Chen, Shaojie Zhang, Wenqian Hu
A congenital hydrocephalus-causing mutation in Trim71 induces stem cell defects via inhibiting Lsd1 mRNA translation. EMBO reports 24 (2) (2022)
Qiuying Liu, Mariah K Novak, Rachel M Pepin, Katharine R Maschhoff, Kailey Worner, Xiaoli Chen, Shaojie Zhang, Wenqian Hu
A congenital hydrocephalus-causing mutation in Trim71 induces stem cell defects via inhibiting Lsd1 mRNA translation. EMBO reports (2022)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
Qiuying Liu, Mariah K Novak, Rachel M Pepin, Katharine R Maschhoff, Kailey Worner, Xiaoli Chen, Shaojie Zhang, Wenqian Hu
A congenital hydrocephalus-causing mutation in Trim71 induces stem cell defects via inhibiting Lsd1 mRNA translation. EMBO reports 24 (2) (2022)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
Qiuying Liu, Mariah K Novak, Rachel M Pepin, Katharine R Maschhoff, Kailey Worner, Xiaoli Chen, Shaojie Zhang, Wenqian Hu
A congenital hydrocephalus-causing mutation in Trim71 induces stem cell defects via inhibiting Lsd1 mRNA translation. EMBO reports 24 (2) (2022)
Qiuying Liu, Xiaoli Chen, Mariah K Novak, Shaojie Zhang, Wenqian Hu
Repressing Ago2 mRNA translation by Trim71 maintains pluripotency through inhibiting let-7 microRNAs. eLife 10 (2021)
Ardalan Naseri, Junjie Shi, Xihong Lin, Shaojie Zhang, Degui Zhi
RAFFI: Accurate and fast familial relationship inference in large scale biobank studies using RaPID. PLoS genetics 17 (1) (2021)
Shahidul Islam, Md Mahfuzur Rahaman, Shaojie Zhang
RNAMotifContrast: a method to discover and visualize RNA structural motif subfamilies. Nucleic acids research 49 (11) (2021)
Ardalan Naseri, Degui Zhi, Shaojie Zhang
Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank. medRxiv : the preprint server for health sciences (2020)
Hanhui Ma, Li-Chun Tu, Yu-Chieh Chung, Ardalan Naseri, David Grünwald, Shaojie Zhang, Thoru Pederson
Cell cycle- and genomic distance-dependent dynamics of a discrete chromosomal region. The Journal of cell biology 218 (5) (2019)
Susan J Baserga, Li-Chun Tu, Ardalan Naseri, Yu-Chieh Chung, David Grünwald, Shaojie Zhang, Thoru Pederson
CRISPR-Sirius: RNA scaffolds for signal amplification in genome imaging. Nature methods 15 (11) (2018)
Xu Zhang, Xiaoli Chen, Qiuying Liu, Shaojie Zhang, Wenqian Hu
Translation repression via modulation of the cytoplasmic poly(A)-binding protein in the inflammatory response. eLife 6 (2017)

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Publication Activity (10 Years)

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Shaojie Zhang