Degui Zhi

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 47

Top Venues

bioRxiv : the preprint server for biology

eLife

PLoS genetics

GigaScience

University of Texas Health Science Center at Houston

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Texas Health Science Center at Houston

United States

Associate Professor :: School of biomedical informatics

Publications

Fang Li, Laila Rasmy, Yang Xiang, Jingna Feng, Ahmed Abdelhameed, Xinyue Hu, Zenan Sun, David Aguilar, Abhijeet Dhoble, Jingcheng Du, Qing Wang, Shuteng Niu, Yifang Dang, Xinyuan Zhang, Ziqian Xie, Yi Nian, JianPing He, Yujia Zhou, Jianfu Li, Mattia A Prosperi, Jiang Bian, Degui Zhi, Cui Tao
Dynamic Prognosis Prediction for Patients on DAPT After Drug-Eluting Stent Implantation: Model Development and Validation. Journal of the American Heart Association 13 (3) (2024)
Khush Patel, Ziqian Xie, Hao Yuan, Sheikh Muhammad Saiful Islam, Yaochen Xie, Wei He, Wanheng Zhang, Assaf Gottlieb, Han Chen, Luca Giancardo, Alexander Knaack, Evan Fletcher, Myriam Fornage, Shuiwang Ji, Degui Zhi
Unsupervised deep representation learning enables phenotype discovery for genetic association studies of brain imaging. Communications biology 7 (1) (2024)
Fang Li, Laila Rasmy, Yang Xiang, Jingna Feng, Ahmed Abdelhameed, Xinyue Hu, Zenan Sun, David Aguilar, Abhijeet Dhoble, Jingcheng Du, Qing Wang, Shuteng Niu, Yifang Dang, Xinyuan Zhang, Ziqian Xie, Yi Nian, JianPing He, Yujia Zhou, Jianfu Li, Mattia A Prosperi, Jiang Bian, Degui Zhi, Cui Tao
Dynamic Prognosis Prediction for Patients on DAPT After Drug-Eluting Stent Implantation: Model Development and Validation. Journal of the American Heart Association 13 (3) (2024)
Fang Li, Laila Rasmy, Yang Xiang, Jingna Feng, Ahmed Abdelhameed, Xinyue Hu, Zenan Sun, David Aguilar, Abhijeet Dhoble, Jingcheng Du, Qing Wang, Shuteng Niu, Yifang Dang, Xinyuan Zhang, Ziqian Xie, Yi Nian, JianPing He, Yujia Zhou, Jianfu Li, Mattia A Prosperi, Jiang Bian, Degui Zhi, Cui Tao
Dynamic Prognosis Prediction for Patients on DAPT After Drug-Eluting Stent Implantation: Model Development and Validation. Journal of the American Heart Association 13 (3) (2024)
Ziqian Xie, Tao Zhang, Sangbae Kim, Jiaxiong Lu, Wanheng Zhang, Cheng-Hui Lin, Man-Ru Wu, Alexander Davis, Roomasa Channa, Luca Giancardo, Han-Yang Chen, Sui Wang, Rui Chen, Degui Zhi
iGWAS: Image-based genome-wide association of self-supervised deep phenotyping of retina fundus images. PLoS genetics 20 (5) (2024)
Fang Li, Laila Rasmy, Yang Xiang, Jingna Feng, Ahmed Abdelhameed, Xinyue Hu, Zenan Sun, David Aguilar, Abhijeet Dhoble, Jingcheng Du, Qing Wang, Shuteng Niu, Yifang Dang, Xinyuan Zhang, Ziqian Xie, Yi Nian, JianPing He, Yujia Zhou, Jianfu Li, Mattia A Prosperi, Jiang Bian, Degui Zhi, Cui Tao
Dynamic Prognosis Prediction for Patients on DAPT After Drug-Eluting Stent Implantation: Model Development and Validation. Journal of the American Heart Association 13 (3) (2024)
Ziqian Xie, Tao Zhang, Sangbae Kim, Jiaxiong Lu, Wanheng Zhang, Cheng-Hui Lin, Man-Ru Wu, Alexander Davis, Roomasa Channa, Luca Giancardo, Han-Yang Chen, Sui Wang, Rui Chen, Degui Zhi
iGWAS: Image-based genome-wide association of self-supervised deep phenotyping of retina fundus images. PLoS genetics 20 (5) (2024)
Fang Li, Laila Rasmy, Yang Xiang, Jingna Feng, Ahmed Abdelhameed, Xinyue Hu, Zenan Sun, David Aguilar, Abhijeet Dhoble, Jingcheng Du, Qing Wang, Shuteng Niu, Yifang Dang, Xinyuan Zhang, Ziqian Xie, Yi Nian, JianPing He, Yujia Zhou, Jianfu Li, Mattia A Prosperi, Jiang Bian, Degui Zhi, Cui Tao
Dynamic Prognosis Prediction for Patients on DAPT After Drug-Eluting Stent Implantation: Model Development and Validation. Journal of the American Heart Association (2024)
Masayuki Nigo, Laila Rasmy, Bingyu Mao, Bijun Sai Kannadath, Ziqian Xie, Degui Zhi
Deep learning model for personalized prediction of positive MRSA culture using time-series electronic health records. Nature communications 15 (1) (2024)
Ardalan Naseri, Degui Zhi, Shaojie Zhang
Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank. eLife 13 (2024)
Ziqian Xie, Tao Zhang, Sangbae Kim, Jiaxiong Lu, Wanheng Zhang, Cheng-Hui Lin, Man-Ru Wu, Alexander Davis, Roomasa Channa, Luca Giancardo, Han-Yang Chen, Sui Wang, Rui Chen, Degui Zhi
iGWAS: Image-based genome-wide association of self-supervised deep phenotyping of retina fundus images. PLoS genetics 20 (5) (2024)
Masayuki Nigo, Laila Rasmy, Bingyu Mao, Bijun Sai Kannadath, Ziqian Xie, Degui Zhi
Deep learning model for personalized prediction of positive MRSA culture using time-series electronic health records. Nature communications 15 (1) (2024)
Ardalan Naseri, Degui Zhi, Shaojie Zhang
Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank. eLife 13 (2024)
Masayuki Nigo, Laila Rasmy, Bingyu Mao, Bijun Sai Kannadath, Ziqian Xie, Degui Zhi
Deep learning model for personalized prediction of positive MRSA culture using time-series electronic health records. Nature communications 15 (1) (2024)
Ardalan Naseri, Degui Zhi, Shaojie Zhang
Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank. eLife 13 (2024)
Ziqian Xie, Tao Zhang, Sangbae Kim, Jiaxiong Lu, Wanheng Zhang, Cheng-Hui Lin, Man-Ru Wu, Alexander Davis, Roomasa Channa, Luca Giancardo, Han-Yang Chen, Sui Wang, Rui Chen, Degui Zhi
iGWAS: Image-based genome-wide association of self-supervised deep phenotyping of retina fundus images. PLoS genetics 20 (5) (2024)
Ardalan Naseri, Degui Zhi, Shaojie Zhang
Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank. eLife 13 (2024)
Ziqian Xie, Tao Zhang, Sangbae Kim, Jiaxiong Lu, Wanheng Zhang, Cheng-Hui Lin, Man-Ru Wu, Alexander Davis, Roomasa Channa, Luca Giancardo, Han-Yang Chen, Sui Wang, Rui Chen, Degui Zhi
iGWAS: Image-based genome-wide association of self-supervised deep phenotyping of retina fundus images. PLoS genetics 20 (5) (2024)
Khush Patel, Ziqian Xie, Hao Yuan, Sheikh Muhammad Saiful Islam, Yaochen Xie, Wei He, Wanheng Zhang, Assaf Gottlieb, Han Chen, Luca Giancardo, Alexander Knaack, Evan Fletcher, Myriam Fornage, Shuiwang Ji, Degui Zhi
Unsupervised deep representation learning enables phenotype discovery for genetic association studies of brain imaging. Communications biology 7 (1) (2024)
Khush Patel, Ziqian Xie, Hao Yuan, Sheikh Muhammad Saiful Islam, Yaochen Xie, Wei He, Wanheng Zhang, Assaf Gottlieb, Han Chen, Luca Giancardo, Alexander Knaack, Evan Fletcher, Myriam Fornage, Shuiwang Ji, Degui Zhi
Unsupervised deep representation learning enables phenotype discovery for genetic association studies of brain imaging. Communications biology 7 (1) (2024)
Khush Patel, Ziqian Xie, Hao Yuan, Sheikh Muhammad Saiful Islam, Yaochen Xie, Wei He, Wanheng Zhang, Assaf Gottlieb, Han Chen, Luca Giancardo, Alexander Knaack, Evan Fletcher, Myriam Fornage, Shuiwang Ji, Degui Zhi
Unsupervised deep representation learning enables phenotype discovery for genetic association studies of brain imaging. Communications biology 7 (1) (2024)
Ardalan Naseri, Degui Zhi, Shaojie Zhang
Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank. eLife 13 (2024)
Ardalan Naseri, Degui Zhi, Shaojie Zhang
Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank. eLife 13 (2024)
Ardalan Naseri, William Yue, Shaojie Zhang, Degui Zhi
FastRecomb: Fast inference of genetic recombination rates in biobank scale data. bioRxiv : the preprint server for biology (2023)
Ardalan Naseri, William Yue, Shaojie Zhang, Degui Zhi
FastRecomb: Fast inference of genetic recombination rates in biobank scale data. bioRxiv : the preprint server for biology (2023)
Ahsan Sanaullah, Degui Zhi, Shaojie Zhang
Minimal Positional Substring Cover: A Haplotype Threading Alternative to Li & Stephens Model. bioRxiv : the preprint server for biology (2023)
Yuan Wei, Degui Zhi, Shaojie Zhang
Fast and accurate local ancestry inference with Recomb-Mix. bioRxiv : the preprint server for biology (2023)
Ahsan Sanaullah, Degui Zhi, Shaojie Zhang
Minimal positional substring cover is a haplotype threading alternative to Li and Stephens Model. Genome research (2023)
Ardalan Naseri, William Yue, Shaojie Zhang, Degui Zhi
FastRecomb: Fast inference of genetic recombination rates in biobank scale data. bioRxiv : the preprint server for biology (2023)
Ardalan Naseri, William Yue, Shaojie Zhang, Degui Zhi
Fast inference of genetic recombination rates in biobank scale data. Genome research (2023)
Ahsan Sanaullah, Degui Zhi, Shaojie Zhang
Minimal Positional Substring Cover: A Haplotype Threading Alternative to Li & Stephens Model. bioRxiv : the preprint server for biology (2023)
Ahsan Sanaullah, Degui Zhi, Shaojie Zhang
Minimal Positional Substring Cover: A Haplotype Threading Alternative to Li & Stephens Model. bioRxiv : the preprint server for biology (2023)
Zhao Li, Rongbin Li, Yujia Zhou, Laila Rasmy, Degui Zhi, Ping Zhu, Antonio Dono, Xiaoqian Jiang, Hua Xu, Yoshua Esquenazi, Wenjin Jim Zheng
Prediction of Brain Metastases Development in Patients With Lung Cancer by Explainable Artificial Intelligence From Electronic Health Records. JCO clinical cancer informatics 7 (2023)
Han-Yang Chen, Ardalan Naseri, Degui Zhi
FiMAP: A fast identity-by-descent mapping test for biobank-scale cohorts. PLoS genetics 19 (12) (2023)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
William Yue, Ardalan Naseri, Victor Wang, Pramesh Shakya, Shaojie Zhang, Degui Zhi
P-smoother: efficient PBWT smoothing of large haplotype panels. Bioinformatics advances 2 (1) (2022)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
Kecong Tang, Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi
Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts. GigaScience 11 (2022)
Lu Tang, Wenlin Liu, Benjamin Thomas, Hong Thoai Nga Tran, Wenxue Zou, Xueying Zhang, Degui Zhi
Texas Public Agencies' Tweets and Public Engagement During the COVID-19 Pandemic: Natural Language Processing Approach. JMIR public health and surveillance 7 (4) (2021)
Ardalan Naseri, Kecong Tang, Xin Geng, Junjie Shi, Jing Zhang, Pramesh Shakya, Xiaoming Liu, Shaojie Zhang, Degui Zhi
Personalized genealogical history of UK individuals inferred from biobank-scale IBD segments. BMC biology 19 (1) (2021)
Laila Rasmy, Yang Xiang, Ziqian Xie, Cui Tao, Degui Zhi
Med-BERT: pretrained contextualized embeddings on large-scale structured electronic health records for disease prediction. NPJ digital medicine 4 (1) (2021)
Yang Xiang, Hangyu Ji, Yujia Zhou, Fang Li, Jingcheng Du, Laila Rasmy, Stephen Wu, Wenjin Jim Zheng, Hua Xu, Degui Zhi, Yaoyun Zhang, Cui Tao
Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study. Journal of medical Internet research 22 (7) (2020)
Ardalan Naseri, Xiaoming Liu, Kecong Tang, Shaojie Zhang, Degui Zhi
RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts. Genome biology 20 (1) (2019)
Jingcheng Du, Lu Tang, Yang Xiang, Degui Zhi, Jun Xu, Hsing-Yi Song, Cui Tao
Public Perception Analysis of Tweets During the 2015 Measles Outbreak: Comparative Study Using Convolutional Neural Network Models. Journal of medical Internet research 20 (7) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Degui Zhi