Shu Yi Shen

Scopus Author ID Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 15

Top Topics

Transcription Factor

Diabetic Retinopathy

Genome Wide Identification

Circulating Tumor

Top Venues

Nature medicine

Nature protocols

Clinical cancer research : an official journal of the American Association for Cancer Research

This page only lists publications with an associated author ORCID identifier.

Publications

Coby Viner, Charles A Ishak, James Johnson, Nicolas J Walker, Hui Shi, Marcela K Sjöberg-Herrera, Shu Yi Shen, Santana M Lardo, David J Adams, Anne C Ferguson-Smith, Daniel D De Carvalho, Sarah J Hainer, Timothy L Bailey, Michael M Hoffman
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet. Genome biology 25 (1) (2024)
Coby Viner, Charles A Ishak, James Johnson, Nicolas J Walker, Hui Shi, Marcela K Sjöberg-Herrera, Shu Yi Shen, Santana M Lardo, David J Adams, Anne C Ferguson-Smith, Daniel D De Carvalho, Sarah J Hainer, Timothy L Bailey, Michael M Hoffman
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet. Genome biology 25 (1) (2024)
Coby Viner, Charles A Ishak, James Johnson, Nicolas J Walker, Hui Shi, Marcela K Sjöberg-Herrera, Shu Yi Shen, Santana M Lardo, David J Adams, Anne C Ferguson-Smith, Daniel D De Carvalho, Sarah J Hainer, Timothy L Bailey, Michael M Hoffman
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet. Genome biology 25 (1) (2024)
Coby Viner, Charles A Ishak, James Johnson, Nicolas J Walker, Hui Shi, Marcela K Sjöberg-Herrera, Shu Yi Shen, Santana M Lardo, David J Adams, Anne C Ferguson-Smith, Daniel D De Carvalho, Sarah J Hainer, Timothy L Bailey, Michael M Hoffman
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet. Genome biology 25 (1) (2024)
Coby Viner, Charles A Ishak, James Johnson, Nicolas J Walker, Hui Shi, Marcela K Sjöberg-Herrera, Shu Yi Shen, Santana M Lardo, David J Adams, Anne C Ferguson-Smith, Daniel D De Carvalho, Sarah J Hainer, Timothy L Bailey, Michael M Hoffman
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet. Genome biology 25 (1) (2024)
Coby Viner, Charles A Ishak, James Johnson, Nicolas J Walker, Hui Shi, Marcela K Sjöberg-Herrera, Shu Yi Shen, Santana M Lardo, David J Adams, Anne C Ferguson-Smith, Daniel D De Carvalho, Sarah J Hainer, Timothy L Bailey, Michael M Hoffman
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet. Genome biology 25 (1) (2024)
Coby Viner, Charles A Ishak, James Johnson, Nicolas J Walker, Hui Shi, Marcela K Sjöberg-Herrera, Shu Yi Shen, Santana M Lardo, David J Adams, Anne C Ferguson-Smith, Daniel D De Carvalho, Sarah J Hainer, Timothy L Bailey, Michael M Hoffman
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet. Genome biology 25 (1) (2024)
Coby Viner, Charles A Ishak, James Johnson, Nicolas J Walker, Hui Shi, Marcela K Sjöberg-Herrera, Shu Yi Shen, Santana M Lardo, David J Adams, Anne C Ferguson-Smith, Daniel D De Carvalho, Sarah J Hainer, Timothy L Bailey, Michael M Hoffman
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet. Genome biology 25 (1) (2024)
Coby Viner, Charles A Ishak, James Johnson, Nicolas J Walker, Hui Shi, Marcela K Sjöberg-Herrera, Shu Yi Shen, Santana M Lardo, David J Adams, Anne C Ferguson-Smith, Daniel D De Carvalho, Sarah J Hainer, Timothy L Bailey, Michael M Hoffman
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet. Genome biology 25 (1) (2024)
Coby Viner, Charles A Ishak, James Johnson, Nicolas J Walker, Hui Shi, Marcela K Sjöberg-Herrera, Shu Yi Shen, Santana M Lardo, David J Adams, Anne C Ferguson-Smith, Daniel D De Carvalho, Sarah J Hainer, Timothy L Bailey, Michael M Hoffman
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet. Genome biology 25 (1) (2024)
Sujun Chen, Jessica Petricca, Wenbin Ye, Jiansheng Guan, Yong Zeng, Nicholas Cheng, Linsey Gong, Shu Yi Shen, Junjie T Hua, Megan Crumbaker, Michael Fraser, Stanley K Liu, Scott V Bratman, Theodorus H Van der Kwast, Trevor J Pugh, Anthony M Joshua, Daniel D De Carvalho, Kim N Chi, Phillip Awadalla, Guoli Ji, Felix Y Feng, Alexander W Wyatt, Housheng Hansen He
The cell-free DNA methylome captures distinctions between localized and metastatic prostate tumors. Nature communications 13 (1) (2022)
Justin M Burgener, Jinfeng Zou, Zhen Zhao, Yangqiao Zheng, Shu Yi Shen, Shao Hui Huang, Sareh Keshavarzi, Wei Xu, Fei-Fei Liu, Geoffrey Liu, John N Waldron, Ilan Weinreb, Anna Spreafico, Lillian L Siu, John R de Almeida, David P Goldstein, Michael M Hoffman, Daniel D De Carvalho, Scott V Bratman
Tumor-Naïve Multimodal Profiling of Circulating Tumor DNA in Head and Neck Squamous Cell Carcinoma. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (15) (2021)
Farshad Nassiri, Ankur Chakravarthy, Shengrui Feng, Shu Yi Shen, Romina Nejad, Jeffrey A Zuccato, Mathew R Voisin, Vikas Patil, Craig Horbinski, Kenneth Aldape, Gelareh Zadeh, Daniel D De Carvalho
Detection and discrimination of intracranial tumors using plasma cell-free DNA methylomes. Nature medicine 26 (7) (2020)
Pier Vitale Nuzzo, Jacob E Berchuck, Keegan Korthauer, Sandor Spisak, Amin H Nassar, Sarah Abou Alaiwi, Ankur Chakravarthy, Shu Yi Shen, Ziad Bakouny, Francesco Boccardo, John Steinharter, Gabrielle Bouchard, Catherine R Curran, Wenting Pan, Sylvan C Baca, Ji-Heui Seo, Gwo-Shu Mary Lee, M Dror Michaelson, Steven L Chang, Sushrut S Waikar, Guru Sonpavde, Rafael A Irizarry, Mark Pomerantz, Daniel D De Carvalho, Toni K Choueiri, Matthew L Freedman
Detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes. Nature medicine 26 (7) (2020)
Shu Yi Shen, Justin M Burgener, Scott V Bratman, Daniel D De Carvalho
Preparation of cfMeDIP-seq libraries for methylome profiling of plasma cell-free DNA. Nature protocols 14 (10) (2019)