Simona Cocco

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 16

Top Topics

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

PLoS computational biology

RNA (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Simona Cocco, Lorenzo Posani, Remi Monasson
Functional effects of mutations in proteins can be predicted and interpreted by guided selection of sequence covariation information. Proceedings of the National Academy of Sciences of the United States of America 121 (26) (2024)
Simona Cocco, Lorenzo Posani, Remi Monasson
Functional effects of mutations in proteins can be predicted and interpreted by guided selection of sequence covariation information. Proceedings of the National Academy of Sciences of the United States of America 121 (26) (2024)
Simona Cocco, Lorenzo Posani, Remi Monasson
Functional effects of mutations in proteins can be predicted and interpreted by guided selection of sequence covariation information. Proceedings of the National Academy of Sciences of the United States of America 121 (26) (2024)
Lorenzo Posani, Francesca Rizzato, Rémi Monasson, Simona Cocco
Infer global, predict local: Quantity-relevance trade-off in protein fitness predictions from sequence data. PLoS computational biology 19 (10) (2023)
Sebastien Wolf, Guillaume Le Goc, Georges Debrégeas, Simona Cocco, Remi Monasson
Emergence of time persistence in a data-driven neural network model. eLife 12 (2023)
Barbara Bravi, Andrea Di Gioacchino, Jorge Fernandez-de-Cossio-Diaz, Aleksandra M Walczak, Thierry Mora, Simona Cocco, Remi Monasson
A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity. eLife 12 (2023)
Ruy Gómez-Ocádiz, Massimiliano Trippa, Chun-Lei Zhang, Lorenzo Posani, Simona Cocco, Rémi Monasson, Christoph Schmidt-Hieber
A synaptic signal for novelty processing in the hippocampus. Nature communications 13 (1) (2022)
Marta Łuksza, Zachary M Sethna, Luis A Rojas, Jayon Lihm, Barbara Bravi, Yuval Elhanati, Kevin C Soares, Masataka Amisaki, Anton Dobrin, David Hoyos, Pablo Guasp, Abderezak Zebboudj, Rebecca Yu, Adrienne Kaya Chandra, Theresa Waters, Zagaa Odgerel, Joanne Leung, Rajya Kappagantula, Alvin P Makohon-Moore, Amber Johns, Anthony Gill, Mathieu Gigoux, Jedd D Wolchok, Taha Merghoub, Michel Sadelain, Erin Patterson, Remi Monasson, Thierry Mora, Aleksandra M Walczak, Simona Cocco, Christine A Iacobuzio-Donahue, Benjamin D Greenbaum, Vinod P Balachandran
Neoantigen quality predicts immunoediting in survivors of pancreatic cancer. Nature 606 (7913) (2022)
Barbara Bravi, Vinod P Balachandran, Benjamin D Greenbaum, Aleksandra M Walczak, Thierry Mora, Remi Monasson, Simona Cocco
Probing T-cell response by sequence-based probabilistic modeling. PLoS computational biology 17 (9) (2021)
Andrea Di Gioacchino, Petr Šulc, Anastassia V Komarova, Benjamin D Greenbaum, Rémi Monasson, Simona Cocco
The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2. Molecular biology and evolution 38 (6) (2021)
Steven Schulz, Sébastien Boyer, Matteo Smerlak, Simona Cocco, Remi Monasson, Clément Nizak, Olivier Rivoire
Parameters and determinants of responses to selection in antibody libraries. PLoS computational biology 17 (3) (2021)
Andrea Di Gioacchino, Rachel Legendre, Yannis Rahou, Valérie Najburg, Pierre Charneau, Benjamin D Greenbaum, Frédéric Tangy, Sylvie van der Werf, Simona Cocco, Anastassia V Komarova
sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs. RNA (New York, N.Y.) 28 (3) (2021)
Andrea Di Gioacchino, Petr Sulc, Anastassia V Komarova, Benjamin D Greenbaum, Remi Monasson, Simona Cocco
The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2. bioRxiv : the preprint server for biology (2020)
Marco Molari, Klaus Eyer, Jean Baudry, Simona Cocco, Remi Monasson
Quantitative modeling of the effect of antigen dosage on B-cell affinity distributions in maturating germinal centers. eLife 9 (2020)
William P Russ, Matteo Figliuzzi, Christian Stocker, Pierre Barrat-Charlaix, Michael Socolich, Peter Kast, Donald Hilvert, Remi Monasson, Simona Cocco, Martin Weigt, Rama Ranganathan
An evolution-based model for designing chorismate mutase enzymes. Science (New York, N.Y.) 369 (6502) (2020)
Jérôme Tubiana, Simona Cocco, Remi Monasson
Learning protein constitutive motifs from sequence data. eLife 8 (2019)