Son Tung Ngo

ResearcherID Loop profile Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 50

Top Topics

Respiratory Syndrome Coronavirus

Silver Nanoparticles

Molecular Dynamics

Top Venues

The journal of physical chemistry. B

Journal of chemical information and modeling

This page only lists publications with an associated author ORCID identifier.

Publications

Dinh Quy Huong, Pham Cam Nam, Duong Tuan Quang, Son Tung Ngo, Tran Duong, Nguyen Minh Tam
Evaluation of Free Radical Scavenging Ability of Triazole-3-Thiol: A Combination of Experimental and Theoretical Approaches. ACS omega 9 (22) (2024)
Quynh Mai Thai, Phuong-Thao Tran, Huong Thi Thu Phung, Pham Minh Quan, Son Tung Ngo
Silver nanoparticles alter the dimerization of Aβ 42 studied by REMD simulations. RSC advances 14 (21) (2024)
Thu Thi Phung, Nguyen Thi Huyen, Nguyen Thi Giang, Nguyen Minh Thu, Nguyen Thanh Son, Nguyen Hoang Tung, Ngo Thi Lan, Son Tung Ngo, Nguyen Thi Mai, Nguyen Thanh Tung
Unraveling Hydrogen Adsorption on Transition Metal-Doped [Mo 3 S 13 ] 2- Clusters: Insights from Density Functional Theory Calculations. ACS omega 9 (18) (2024)
Quynh Mai Thai, Trung Hai Nguyen, Huong Thi Thu Phung, Pham Minh Quan, Nguyen Kim Tuyen Pham, Jim-Tong Horng, Son Tung Ngo
MedChemExpress compounds prevent neuraminidase N1 via physics- and knowledge-based methods. RSC advances 14 (27) (2024)
Dinh Quy Huong, Pham Cam Nam, Duong Tuan Quang, Son Tung Ngo, Tran Duong, Nguyen Minh Tam
Evaluation of Free Radical Scavenging Ability of Triazole-3-Thiol: A Combination of Experimental and Theoretical Approaches. ACS omega 9 (22) (2024)
Son Tung Ngo, Quynh Mai Thai, Trung Hai Nguyen, Nguyen Ngoc Tuan, T Ngoc Han Pham, Huong Thi Thu Phung, Duong Tuan Quang
Alchemical approach performance in calculating the ligand-binding free energy. RSC advances 14 (21) (2024)
Thu Thi Phung, Nguyen Thi Huyen, Nguyen Thi Giang, Nguyen Minh Thu, Nguyen Thanh Son, Nguyen Hoang Tung, Ngo Thi Lan, Son Tung Ngo, Nguyen Thi Mai, Nguyen Thanh Tung
Unraveling Hydrogen Adsorption on Transition Metal-Doped [Mo 3 S 13 ] 2- Clusters: Insights from Density Functional Theory Calculations. ACS omega 9 (18) (2024)
Son Tung Ngo, Quynh Mai Thai, Trung Hai Nguyen, Nguyen Ngoc Tuan, T Ngoc Han Pham, Huong Thi Thu Phung, Duong Tuan Quang
Alchemical approach performance in calculating the ligand-binding free energy. RSC advances 14 (21) (2024)
Quynh Mai Thai, Phuong-Thao Tran, Huong Thi Thu Phung, Pham Minh Quan, Son Tung Ngo
Silver nanoparticles alter the dimerization of Aβ 42 studied by REMD simulations. RSC advances 14 (21) (2024)
Quynh Mai Thai, Trung Hai Nguyen, Huong Thi Thu Phung, Pham Minh Quan, Nguyen Kim Tuyen Pham, Jim-Tong Horng, Son Tung Ngo
MedChemExpress compounds prevent neuraminidase N1 via physics- and knowledge-based methods. RSC advances 14 (27) (2024)
Son Tung Ngo, Trung Hai Nguyen, Van V Vu
Morphology of a Transmembrane Aβ 42 Tetramer via REMD Simulations. Journal of chemical information and modeling (2023)
Trung Hai Nguyen, Phuong-Thao Tran, Ngoc Quynh Anh Pham, Van-Hai Hoang, Dinh Minh Hiep, Son Tung Ngo
Identifying Possible AChE Inhibitors from Drug-like Molecules via Machine Learning and Experimental Studies. ACS omega 7 (24) (2022)
Ngo Thi Lan, Nguyen Thi Mai, Ngo Tuan Cuong, Phung Thi Hong Van, Duong Duc La, Nguyen Minh Tam, Son Tung Ngo, Nguyen Thanh Tung
Density Functional Study of Size-Dependent Hydrogen Adsorption on Ag n Cr ( n = 1-12) Clusters. ACS omega 7 (42) (2022)
Son Tung Ngo, Trung Hai Nguyen, Nguyen Thanh Tung, Binh Khanh Mai
Insights into the binding and covalent inhibition mechanism of PF-07321332 to SARS-CoV-2 M pro . RSC advances 12 (6) (2022)
Trung Hai Nguyen, Phuong H Nguyen, Son Tung Ngo, Philippe Derreumaux
Effect of Cholesterol Molecules on Aβ1-42 Wild-Type and Mutants Trimers. Molecules (Basel, Switzerland) 27 (4) (2022)
Son Tung Ngo, Han N Phan, Cuong X Luu, Chinh N Le, Giap T Ho, Nhung T C Ngo, Loan Q Le, Binh Khanh Mai, Huong T T Phung, Hoang-Dung Nguyen, Khanh B Vu, Van V Vu
Distal Hydrophobic Loop Modulates the Copper Active Site and Reaction of AA13 Polysaccharide Monooxygenases. The journal of physical chemistry. B 126 (39) (2022)
Son Tung Ngo, Trung Hai Nguyen, Nguyen Thanh Tung, Van V Vu, Pham Minh Quan, Binh Khanh Mai
Characterizing the ligand-binding affinity toward SARS-CoV-2 Mpro via physics- and knowledge-based approaches. Physical chemistry chemical physics : PCCP (2022)
Nguyen Minh Tam, Trung Hai Nguyen, Vu Thi Ngan, Nguyen Thanh Tung, Son Tung Ngo
Unbinding ligands from SARS-CoV-2 Mpro via umbrella sampling simulations. Royal Society open science 9 (1) (2022)
T Ngoc Han Pham, Trung Hai Nguyen, Nguyen Minh Tam, Thien Y Vu, Nhat Truong Pham, Nguyen Truong Huy, Binh Khanh Mai, Nguyen Thanh Tung, Pham Minh Quan, Van V Vu, Son Tung Ngo
Improving ligand-ranking of AutoDock Vina by changing the empirical parameters. Journal of computational chemistry 43 (3) (2021)
Nguyen Minh Tam, Pham Minh Quan, Huy Truong Nguyen, Nam Dao Hong, Nguyen Khoa Hien, Duong Tuan Quang, Huong Thi Thu Phung, Son Tung Ngo
Potential inhibitors for SARS-CoV-2 Mpro from marine compounds. RSC advances 11 (36) (2021)
Son Tung Ngo, Phuong Hoang Nguyen, Philippe Derreumaux
Impact of the Rat R5G, Y10F, and H13R Mutations on Tetrameric Aβ42 β-Barrel in a Lipid Bilayer Membrane Model. The journal of physical chemistry. B 125 (12) (2021)
Son Tung Ngo, Phuong Hoang Nguyen, Philippe Derreumaux
Cholesterol Molecules Alter the Energy Landscape of Small Aβ1-42 Oligomers. The journal of physical chemistry. B 125 (9) (2021)
Nguyen Thi Mai, Ngo Thi Lan, Ngo Tuan Cuong, Nguyen Minh Tam, Son Tung Ngo, Thu Thi Phung, Nguyen Van Dang, Nguyen Thanh Tung
Systematic Investigation of the Structure, Stability, and Spin Magnetic Moment of CrM n Clusters (M = Cu, Ag, Au, and n = 2-20) by DFT Calculations. ACS omega 6 (31) (2021)
Nguyen Minh Tam, Duc-Hung Pham, Dinh Minh Hiep, Phuong-Thao Tran, Duong Tuan Quang, Son Tung Ngo
Searching and designing potential inhibitors for SARS-CoV-2 Mpro from natural sources using atomistic and deep-learning calculations. RSC advances 11 (61) (2021)
Phuong Hoang Nguyen, Ayyalusamy Ramamoorthy, Bikash R Sahoo, Jie Zheng, Peter Faller, John E Straub, Laura Domínguez, Joan-Emma Shea, Nikolay V Dokholyan, Alfonso De Simone, Buyong Ma, Ruth Nussinov, Saeed Najafi, Son Tung Ngo, Antoine Loquet, Mara Chiricotto, Pritam Ganguly, James J McCarty, Mai Suan Li, Carol K Hall, Yiming Wang, Yifat Miller, Simone Melchionna, Birgit Habenstein, Stepan Timr, Jiaxing Chen, Brianna Hnath, Birgit Strodel, Rakez Kayed, Sylvain Lesné, Guanghong Wei, Fabio Sterpone, Andrew J Doig, Philippe Derreumaux
Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis. Chemical reviews 121 (4) (2021)
Nguyen Minh Tam, Pham Cam Nam, Duong Tuan Quang, Nguyen Thanh Tung, Van V Vu, Son Tung Ngo
Binding of inhibitors to the monomeric and dimeric SARS-CoV-2 Mpro. RSC advances 11 (5) (2021)
Son Tung Ngo, Khanh B Vu, Pham Minh Quan, Nguyen Minh Tam, Phuong-Thao Tran
Marine derivatives prevent wMUS81 in silico studies. Royal Society open science 8 (9) (2021)
Son Tung Ngo, Trung Hai Nguyen, Duc-Hung Pham, Nguyen Thanh Tung, Pham Cam Nam
Thermodynamics and kinetics in antibody resistance of the 501Y.V2 SARS-CoV-2 variant. RSC advances 11 (53) (2021)
Son Tung Ngo, Nguyen Minh Tam, Pham Minh Quan, Trung Hai Nguyen
Benchmark of Popular Free Energy Approaches Revealing the Inhibitors Binding to SARS-CoV-2 Mpro. Journal of chemical information and modeling 61 (5) (2021)
Son Tung Ngo
Estimating the ligand-binding affinity via λ-dependent umbrella sampling simulations. Journal of computational chemistry 42 (2) (2020)
Huynh Minh Hung, Minh Tho Nguyen, Phuong-Thao Tran, Vi Khanh Truong, James Chapman, Le Huu Quynh Anh, Philippe Derreumaux, Van V Vu, Son Tung Ngo
Impact of the Astaxanthin, Betanin, and EGCG Compounds on Small Oligomers of Amyloid Aβ40 Peptide. Journal of chemical information and modeling 60 (3) (2020)
Nguyen Thi Mai, Son Tung Ngo, Peter Lievens, Ewald Janssens, Nguyen Thanh Tung
Photofragmentation Patterns of Cobalt Oxide Cations ConOm+ (n = 5-9, m = 4-13): From Oxygen-Deficient to Oxygen-Rich Species. The journal of physical chemistry. A 124 (37) (2020)
Son Tung Ngo, Han N Phan, Chinh N Le, Nhung C T Ngo, Khanh Bao Vu, Nguyen Thanh Tung, Cuong X Luu, Van V Vu
Fine Tuning of the Copper Active Site in Polysaccharide Monooxygenases. The journal of physical chemistry. B 124 (10) (2020)
Son Tung Ngo, Nam Dao Hong, Le Huu Quynh Anh, Dinh Minh Hiep, Nguyen Thanh Tung
Effective estimation of the inhibitor affinity of HIV-1 protease via a modified LIE approach. RSC advances 10 (13) (2020)
Son Tung Ngo, Hung Minh Nguyen, Le Thi Thuy Huong, Pham Minh Quan, Vi Khanh Truong, Nguyen Thanh Tung, Van V Vu
Assessing potential inhibitors of SARS-CoV-2 main protease from available drugs using free energy perturbation simulations. RSC advances 10 (66) (2020)
Son Tung Ngo, Ngoc Quynh Anh Pham, Ly Thi Le, Duc-Hung Pham, Van V Vu
Computational Determination of Potential Inhibitors of SARS-CoV-2 Main Protease. Journal of chemical information and modeling 60 (12) (2020)
Pham Minh Quan, Khanh B Vu, T Ngoc Han Pham, Le Thi Thuy Huong, Linh Hoang Tran, Nguyen Thanh Tung, Van V Vu, Trung Hai Nguyen, Son Tung Ngo
Rapid prediction of possible inhibitors for SARS-CoV-2 main protease using docking and FPL simulations. RSC advances 10 (53) (2020)
Nguyen Thanh Nguyen, Trung Hai Nguyen, T Ngoc Han Pham, Nguyen Truong Huy, Mai Van Bay, Pham Minh Quan, Pham Cam Nam, Van V Vu, Son Tung Ngo
Autodock Vina Adopts More Accurate Binding Poses but Autodock4 Forms Better Binding Affinity. Journal of chemical information and modeling 60 (1) (2020)
Son Tung Ngo, Phuong Hoang Nguyen, Philippe Derreumaux
Stability of Aβ11-40 Trimers with Parallel and Antiparallel β-Sheet Organizations in a Membrane-Mimicking Environment by Replica Exchange Molecular Dynamics Simulation. The journal of physical chemistry. B 124 (4) (2020)
Ngo Xuan Hoang, Van-Hai Hoang, Thi-Thu-Trang Luu, Hung Nguyen Luu, Thien Ngo, Duong Van Hieu, Nguyen Huu Long, Le Viet Anh, Son Tung Ngo, Yen Thi Kim Nguyen, Byung Woo Han, Thanh Xuan Nguyen, Dinh Thi Thanh Hai, Tran Thi Thu Hien, Phuong-Thao Tran
Design, synthesis and bioevaluation of novel 6-substituted aminoindazole derivatives as anticancer agents. RSC advances 10 (73) (2020)
Phuong Hoang Nguyen, Josep M Campanera, Son Tung Ngo, Antoine Loquet, Philippe Derreumaux
Tetrameric Aβ40 and Aβ42 β-Barrel Structures by Extensive Atomistic Simulations. I. In a Bilayer Mimicking a Neuronal Membrane. The journal of physical chemistry. B 123 (17) (2019)
Phuong Hoang Nguyen, Josep M Campanera, Son Tung Ngo, Antoine Loquet, Philippe Derreumaux
Tetrameric Aβ40 and Aβ42 β-Barrel Structures by Extensive Atomistic Simulations. II. In Aqueous Solution. The journal of physical chemistry. B 123 (31) (2019)
Son Tung Ngo, Philippe Derreumaux, Van V Vu
Probable Transmembrane Amyloid α-Helix Bundles Capable of Conducting Ca2+ Ions. The journal of physical chemistry. B 123 (12) (2019)
Son Tung Ngo, Trung Hai Nguyen, Nguyen Thanh Tung, Pham Cam Nam, Khanh B Vu, Van V Vu
Oversampling Free Energy Perturbation Simulation in Determination of the Ligand-Binding Free Energy. Journal of computational chemistry 41 (7) (2019)
Phuong-Thao Tran, Van-Hai Hoang, Jeewoo Lee, Tran Thi Thu Hien, Nguyen Thanh Tung, Son Tung Ngo
In vitro and in silico determination of glutaminyl cyclase inhibitors. RSC advances 9 (51) (2019)
Son Tung Ngo, Phuong Duy Tran-Le, Giap T Ho, Loan Q Le, Le Minh Bui, Bao Khanh Vu, Huong Thi Thu Phung, Hoang-Dung Nguyen, Thanh-Sang Vo, Van V Vu
Interaction of carbohydrate binding module 20 with starch substrates. RSC advances 9 (43) (2019)
Son Tung Ngo, Binh Khanh Mai, Philippe Derreumaux, Van V Vu
Adequate prediction for inhibitor affinity of Aβ 40 protofibril using the linear interaction energy method. RSC advances 9 (22) (2019)
Son Tung Ngo, Huong Thi Thu Phung, Khanh B Vu, Van V Vu
Atomistic investigation of an Iowa Amyloid-β trimer in aqueous solution. RSC advances 8 (73) (2018)
Son Tung Ngo, Huynh Minh Hung, Duc Toan Truong, Minh Tho Nguyen
Replica exchange molecular dynamics study of the truncated amyloid beta (11-40) trimer in solution. Physical chemistry chemical physics : PCCP 19 (3) (2018)
Son Tung Ngo, Minh Tung Nguyen, Nguyen Thanh Nguyen, Van V Vu
The Effects of A21G Mutation on Transmembrane Amyloid Beta (11-40) Trimer: An In Silico Study. The journal of physical chemistry. B 121 (36) (2017)