Birgit Strodel

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 49

Top Topics

Sickle Cell Disease

Binding Protein

Molecular Dynamics

Drug Administration

Top Venues

ACS chemical biology

Bioconjugate chemistry

Molecules (Basel, Switzerland)

The journal of physical chemistry. B

This page only lists publications with an associated author ORCID identifier.

Publications

André Paschold, Moritz Schäffler, Xincheng Miao, Luis Gardon, Stephanie Krüger, Henrike Heise, Merle Insa Silja Röhr, Maria Ott, Birgit Strodel, Wolfgang Hubertus Binder
Photocontrolled Reversible Amyloid Fibril Formation of Parathyroid Hormone-Derived Peptides. Bioconjugate chemistry (2024)
André Paschold, Moritz Schäffler, Xincheng Miao, Luis Gardon, Stephanie Krüger, Henrike Heise, Merle Insa Silja Röhr, Maria Ott, Birgit Strodel, Wolfgang Hubertus Binder
Photocontrolled Reversible Amyloid Fibril Formation of Parathyroid Hormone-Derived Peptides. Bioconjugate chemistry 35 (7) (2024)
André Paschold, Moritz Schäffler, Xincheng Miao, Luis Gardon, Stephanie Krüger, Henrike Heise, Merle Insa Silja Röhr, Maria Ott, Birgit Strodel, Wolfgang Hubertus Binder
Photocontrolled Reversible Amyloid Fibril Formation of Parathyroid Hormone-Derived Peptides. Bioconjugate chemistry 35 (7) (2024)
André Paschold, Moritz Schäffler, Xincheng Miao, Luis Gardon, Stephanie Krüger, Henrike Heise, Merle Insa Silja Röhr, Maria Ott, Birgit Strodel, Wolfgang Hubertus Binder
Photocontrolled Reversible Amyloid Fibril Formation of Parathyroid Hormone-Derived Peptides. Bioconjugate chemistry 35 (7) (2024)
Raphael Josef Eberle, Marc Sevenich, Ian Gering, Lara Scharbert, Birgit Strodel, Nils A Lakomek, Karoline Santur, Jeannine Mohrlüder, Mônika A Coronado, Dieter Willbold
Discovery of All-d-Peptide Inhibitors of SARS-CoV-2 3C-like Protease. ACS chemical biology 18 (2) (2023)
Raphael Josef Eberle, Marc Sevenich, Ian Gering, Lara Scharbert, Birgit Strodel, Nils A Lakomek, Karoline Santur, Jeannine Mohrlüder, Mônika A Coronado, Dieter Willbold
Discovery of All-d-Peptide Inhibitors of SARS-CoV-2 3C-like Protease. ACS chemical biology 18 (2) (2023)
Eva Smorodina, Batuhan Kav, Hebah Fatafta, Birgit Strodel
Effects of ion type and concentration on the structure and aggregation of the amyloid peptide A β 16 - 22 $$ {\boldsymbol{\beta}}_{16-22} $$ . Proteins (2023)
Raphael Josef Eberle, Marc Sevenich, Ian Gering, Lara Scharbert, Birgit Strodel, Nils A Lakomek, Karoline Santur, Jeannine Mohrlüder, Mônika A Coronado, Dieter Willbold
Discovery of All-d-Peptide Inhibitors of SARS-CoV-2 3C-like Protease. ACS chemical biology (2023)
Raphael Josef Eberle, Marc Sevenich, Ian Gering, Lara Scharbert, Birgit Strodel, Nils A Lakomek, Karoline Santur, Jeannine Mohrlüder, Mônika A Coronado, Dieter Willbold
Discovery of All-d-Peptide Inhibitors of SARS-CoV-2 3C-like Protease. ACS chemical biology 18 (2) (2023)
Mohammed Khaled, Isabel Rönnbäck, Leopold L Ilag, Astrid Gräslund, Birgit Strodel, Nicklas Österlund
A Hairpin Motif in the Amyloid-β Peptide Is Important for Formation of Disease-Related Oligomers. Journal of the American Chemical Society (2023)
Moritz Schäffler, Suman Samantray, Birgit Strodel
Transition Networks Unveil Disorder-to-Order Transformations in A β Caused by Glycosaminoglycans or Lipids. International journal of molecular sciences 24 (14) (2023)
Raphael Josef Eberle, Marc Sevenich, Ian Gering, Lara Scharbert, Birgit Strodel, Nils A Lakomek, Karoline Santur, Jeannine Mohrlüder, Mônika A Coronado, Dieter Willbold
Discovery of All-d-Peptide Inhibitors of SARS-CoV-2 3C-like Protease. ACS chemical biology 18 (2) (2023)
Raphael Josef Eberle, Marc Sevenich, Ian Gering, Lara Scharbert, Birgit Strodel, Nils A Lakomek, Karoline Santur, Jeannine Mohrlüder, Mônika A Coronado, Dieter Willbold
Discovery of All-d-Peptide Inhibitors of SARS-CoV-2 3C-like Protease. ACS chemical biology 18 (2) (2023)
Wibke Schumann, Jennifer Loschwitz, Jens Reiners, Daniel Degrandi, Larissa Legewie, Kai Stühler, Klaus Pfeffer, Gereon Poschmann, Sander H J Smits, Birgit Strodel
Integrative modeling of guanylate binding protein dimers. Protein science : a publication of the Protein Society (2023)
Batuhan Kav, Birgit Strodel
Does the inclusion of electronic polarisability lead to a better modelling of peptide aggregation? RSC advances 12 (32) (2022)
Maryam O Olagunju, Jennifer Loschwitz, Olujide O Olubiyi, Birgit Strodel
Multiscale MD simulations of wild-type and sickle hemoglobin aggregation. Proteins 90 (11) (2022)
Oliver H Weiergräber, Dušan Petrović, Andreas Kislat, Martin Pattky, Judith Fabig, Renu Batra-Safferling, Jan Schulte Am Esch, Karen Hänel, Carolin Huhn, Birgit Strodel, Bernhard Homey, Dieter Willbold
Structure and Dynamics of Human Chemokine CCL16-Implications for Biological Activity. Biomolecules 12 (11) (2022)
Lara Pfaff, Jian Gao, Zhishuai Li, Anna Jäckering, Gert Weber, Jan Mican, Yinping Chen, Weiliang Dong, Xu Han, Christian G Feiler, Yu-Fei Ao, Christoffel P S Badenhorst, David Bednar, Gottfried J Palm, Michael Lammers, Jiri Damborsky, Birgit Strodel, Wei-Dong Liu, Uwe T Bornscheuer, Ren Wei
Multiple Substrate Binding Mode-Guided Engineering of a Thermophilic PET Hydrolase. ACS catalysis 12 (15) (2022)
Jannik Hornbergs, Karolin Montag, Jennifer Loschwitz, Inga Mohr, Gereon Poschmann, Anika Schnake, Regina Gratz, Tzvetina Brumbarova, Monique Eutebach, Kalina Angrand, Claudia Fink-Straube, Kai Stühler, Jürgen Zeier, Laura Hartmann, Birgit Strodel, Rumen Ivanov, Petra Bauer
SEC14-GOLD protein PATELLIN2 binds IRON-REGULATED TRANSPORTER1 linking root iron uptake to vitamin E. Plant physiology (2022)
Suman Samantray, Olujide O Olubiyi, Birgit Strodel
The Influences of Sulphation, Salt Type, and Salt Concentration on the Structural Heterogeneity of Glycosaminoglycans. International journal of molecular sciences 22 (21) (2021)
Dieter Willbold, Birgit Strodel, Gunnar F Schröder, Wolfgang Hoyer, Henrike Heise
Amyloid-type Protein Aggregation and Prion-like Properties of Amyloids. Chemical reviews 121 (13) (2021)
Arghadwip Paul, Suman Samantray, Marco Anteghini, Mohammed Khaled, Birgit Strodel
Thermodynamics and kinetics of the amyloid-β peptide revealed by Markov state models based on MD data in agreement with experiment. Chemical science 12 (19) (2021)
Phuong Hoang Nguyen, Ayyalusamy Ramamoorthy, Bikash R Sahoo, Jie Zheng, Peter Faller, John E Straub, Laura Domínguez, Joan-Emma Shea, Nikolay V Dokholyan, Alfonso De Simone, Buyong Ma, Ruth Nussinov, Saeed Najafi, Son Tung Ngo, Antoine Loquet, Mara Chiricotto, Pritam Ganguly, James J McCarty, Mai Suan Li, Carol K Hall, Yiming Wang, Yifat Miller, Simone Melchionna, Birgit Habenstein, Stepan Timr, Jiaxing Chen, Brianna Hnath, Birgit Strodel, Rakez Kayed, Sylvain Lesné, Guanghong Wei, Fabio Sterpone, Andrew J Doig, Philippe Derreumaux
Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis. Chemical reviews 121 (4) (2021)
Hebah Fatafta, Mohammed Khaled, Michael C Owen, Abdallah Sayyed-Ahmad, Birgit Strodel
Amyloid-β peptide dimers undergo a random coil to β-sheet transition in the aqueous phase but not at the neuronal membrane. Proceedings of the National Academy of Sciences of the United States of America 118 (39) (2021)
Suman Samantray, Birgit Strodel
The Effects of Different Glycosaminoglycans on the Structure and Aggregation of the Amyloid-β (16-22) Peptide. The journal of physical chemistry. B 125 (21) (2021)
Hebah Fatafta, Chetan Poojari, Abdallah Sayyed-Ahmad, Birgit Strodel, Michael C Owen
Role of Oxidized Gly25, Gly29, and Gly33 Residues on the Interactions of Aβ1-42 with Lipid Membranes. ACS chemical neuroscience 11 (4) (2020)
Olujide O Olubiyi, Maryam Olagunju, Monika Keutmann, Jennifer Loschwitz, Birgit Strodel
High Throughput Virtual Screening to Discover Inhibitors of the Main Protease of the Coronavirus SARS-CoV-2. Molecules (Basel, Switzerland) 25 (14) (2020)
Suman Samantray, Feng Yin, Batuhan Kav, Birgit Strodel
Different Force Fields Give Rise to Different Amyloid Aggregation Pathways in Molecular Dynamics Simulations. Journal of chemical information and modeling 60 (12) (2020)
Alexander-Maurice Illig, Birgit Strodel
Performance of Markov State Models and Transition Networks on Characterizing Amyloid Aggregation Pathways from MD Data. Journal of chemical theory and computation 16 (12) (2020)
Olujide O Olubiyi, Maryam O Olagunju, Birgit Strodel
Rational Drug Design of Peptide-Based Therapies for Sickle Cell Disease. Molecules (Basel, Switzerland) 24 (24) (2019)
Ushnish Sengupta, Birgit Strodel
Markov models for the elucidation of allosteric regulation. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 373 (1749) (2019)
Michael C Owen, David Gnutt, Mimi Gao, Sebastian K T S Wärmländer, Jüri Jarvet, Astrid Gräslund, Roland Hermann Alfons Winter, Simon Ebbinghaus, Birgit Strodel
Effects of in vivo conditions on amyloid aggregation. Chemical Society reviews 48 (14) (2019)
Carsten Krichel, Christina Möckel, Oliver Schillinger, Pitter F Huesgen, Heinrich Sticht, Birgit Strodel, Oliver H Weiergräber, Dieter Willbold, Philipp Neudecker
Solution structure of the autophagy-related protein LC3C reveals a polyproline II motif on a mobile tether with phosphorylation site. Scientific reports 9 (1) (2019)
Tao Zhang, Jennifer Loschwitz, Birgit Strodel, Luitgard Nagel-Steger, Dieter Willbold
Interference with Amyloid-β Nucleation by Transient Ligand Interaction. Molecules (Basel, Switzerland) 24 (11) (2019)
Birgit Strodel, Vladimir N Uversky
Transition Metal Ion Interactions with Disordered Amyloid-β Peptides in the Pathogenesis of Alzheimer's Disease: Insights from Computational Chemistry Studies. Journal of chemical information and modeling 59 (5) (2019)
Christina Möckel, Jakub Kubiak, Oliver Schillinger, Ralf Kühnemuth, Dennis Della Corte, Gunnar F Schröder, Dieter Willbold, Birgit Strodel, Claus A M Seidel, Philipp Neudecker
Integrated NMR, Fluorescence, and Molecular Dynamics Benchmark Study of Protein Mechanics and Hydrodynamics. The journal of physical chemistry. B 123 (7) (2019)
Bogdan Barz, Jennifer Loschwitz, Birgit Strodel
Large-scale, dynamin-like motions of the human guanylate binding protein 1 revealed by multi-resolution simulations. PLoS computational biology 15 (10) (2019)
Ushnish Sengupta, Martín Carballo-Pacheco, Birgit Strodel
Automated Markov state models for molecular dynamics simulations of aggregation and self-assembly. The Journal of chemical physics 150 (11) (2019)
Qinghua Liao, Yashraj Kulkarni, Ushnish Sengupta, Dušan Petrović, Adrian J Mulholland, Marc W Van der Kamp, Birgit Strodel, Shina Caroline Lynn Kamerlin
Loop Motion in Triosephosphate Isomerase Is Not a Simple Open and Shut Case. Journal of the American Chemical Society 140 (46) (2018)
Martín Carballo-Pacheco, Ahmed E Ismail, Birgit Strodel
On the Applicability of Force Fields To Study the Aggregation of Amyloidogenic Peptides Using Molecular Dynamics Simulations. Journal of chemical theory and computation 14 (11) (2018)
Michael C Owen, Waldemar Kulig, Tomasz Róg, Ilpo Vattulainen, Birgit Strodel
Cholesterol Protects the Oxidized Lipid Bilayer from Water Injury: An All-Atom Molecular Dynamics Study. The Journal of membrane biology 251 (3) (2018)
Nicklas Österlund, Yashraj S Kulkarni, Agata D Misiaszek, Cecilia Wallin, Dennis M Krüger, Qinghua Liao, Farshid Mashayekhy Rad, Jüri Jarvet, Birgit Strodel, Sebastian K T S Wärmländer, Leopold L Ilag, Shina Caroline Lynn Kamerlin, Astrid Gräslund
Amyloid-β Peptide Interactions with Amphiphilic Surfactants: Electrostatic and Hydrophobic Effects. ACS chemical neuroscience 9 (7) (2018)
Dušan Petrović, Ansgar Bokel, Matthew Allan, Vlada B Urlacher, Birgit Strodel
Simulation-Guided Design of Cytochrome P450 for Chemo- and Regioselective Macrocyclic Oxidation. Journal of chemical information and modeling 58 (4) (2018)
Thibault Viennet, Michael M Wördehoff, Boran Uluca, Chetan S Poojari, Hamed Shaykhalishahi, Dieter Willbold, Birgit Strodel, Henrike Heise, Alexander K Buell, Wolfgang Hoyer, Manuel Etzkorn
Structural insights from lipid-bilayer nanodiscs link α-Synuclein membrane-binding modes to amyloid fibril formation. Communications biology 1 (2018)
Bogdan Barz, Qinghua Liao, Birgit Strodel
Pathways of Amyloid-β Aggregation Depend on Oligomer Shape. Journal of the American Chemical Society 140 (1) (2017)
Oliver Schillinger, Vineet Panwalkar, Birgit Strodel, Andrew J Dingley
Molecular Dynamics Simulations Reveal Key Roles of the Interleukin-6 Alpha Receptor in the Assembly of the Human Interleukin-6 Receptor Complex. The journal of physical chemistry. B 121 (34) (2017)
Qinghua Liao, Anna Pabis, Birgit Strodel, Shina Caroline Lynn Kamerlin
Extending the Nonbonded Cationic Dummy Model to Account for Ion-Induced Dipole Interactions. The journal of physical chemistry letters 8 (21) (2017)
Luitgard Nagel-Steger, Michael C Owen, Birgit Strodel
An Account of Amyloid Oligomers: Facts and Figures Obtained from Experiments and Simulations. Chembiochem : a European journal of chemical biology 17 (8) (2016)
Bogdan Barz, Birgit Strodel
Understanding Amyloid-β Oligomerization at the Molecular Level: The Role of the Fibril Surface. Chemistry (Weinheim an der Bergstrasse, Germany) 22 (26) (2016)