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Stefan J Green

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 34

Top Venues

PloS one

Scientific reports

Microbiology resource announcements

Microbial ecology

University of Illinois at Chicago

Hebrew University of Jerusalem Robert H Smith Faculty of Agriculture Food and Environment (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Illinois at Chicago

United States

Associate Director :: Research Resources Center

Education History

Hebrew University of Jerusalem Robert H Smith Faculty of Agriculture Food and Environment

Israel

PHD :: Microbiology / Plant Protection

Publications

Katherine Anne Maki, Brian Wolff, Leonardo Varuzza, Stefan J Green, Jennifer J Barb
Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples. PloS one 18 (1) (2023)
Katherine Anne Maki, Brian Wolff, Leonardo Varuzza, Stefan J Green, Jennifer J Barb
Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples. PloS one 18 (1) (2023)
Supriya D Mehta, Walter Agingu, Garazi Zulaika, Elizabeth Nyothach, Runa Bhaumik, Stefan J Green, Anna Maria van Eijk, Fredrick O Otieno, Penelope A Phillips-Howard, John Schneider
Vaginal Microbial Network Analysis Reveals Novel Taxa Relationships among Adolescent and Young Women with Incident Sexually Transmitted Infection Compared with Those Remaining Persistently Negative over a 30-Month Period. Microorganisms 11 (8) (2023)
Katherine Anne Maki, Brian Wolff, Leonardo Varuzza, Stefan J Green, Jennifer J Barb
Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples. PloS one 18 (1) (2023)
Katherine Anne Maki, Brian Wolff, Leonardo Varuzza, Stefan J Green, Jennifer J Barb
Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples. PloS one 18 (1) (2023)
Wieteke A Holthuijzen, Elizabeth N Flint, Stefan J Green, Jonathan H Plissner, Daniel Simberloff, Dagmar Sweeney, Coral A Wolf, Holly P Jones
An invasive appetite: Combining molecular and stable isotope analyses to reveal the diet of introduced house mice (Mus musculus) on a small, subtropical island. PloS one 18 (10) (2023)
Katherine Anne Maki, Brian Wolff, Leonardo Varuzza, Stefan J Green, Jennifer J Barb
Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples. PloS one 18 (1) (2023)
Stefan J Green, Tamas Torok, Jonathan E Allen, Emiley Eloe-Fadrosh, Scott A Jackson, Sunny C Jiang, Stuart S Levine, Shawn Levy, Lynn M Schriml, W Kelley Thomas, Jason M Wood, Scott W Tighe
Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report. Astrobiology (2023)
Nadine Wunsch, Stefan J Green, Sebastian Adam, Janie Hampton, Penelope A Phillips-Howard, Supriya D Mehta
In Vitro Study to Assess Effective Cleaning Techniques for Removing Staphylococcus aureus from Menstrual Cups. International journal of environmental research and public health 19 (3) (2022)
Jan Hubert, Marta Nesvorna, Marie Bostlova, Bruno Sopko, Stefan J Green, Thomas W Phillips
The Effect of Residual Pesticide Application on Microbiomes of the Storage Mite Tyrophagus putrescentiae. Microbial ecology (2022)
Sarah E Sansom, Latania K Logan, Stefan J Green, Nicholas M Moore, Mary K Hayden
Whole-genome sequencing for neonatal intensive care unit outbreak investigations: Insights and lessons learned. Antimicrobial stewardship & healthcare epidemiology : ASHE 1 (1) (2021)
Alexandre Ferro Aissa, Abul Bashar Mir Md Khademul Islam, Majd M Ariss, Cammille C Go, Alexandra E Rader, Ryan D Conrardy, Alexa M Gajda, Carlota Rubio-Perez, Klara Valyi-Nagy, Mary Pasquinelli, Lawrence E Feldman, Stefan J Green, Nuria Lopez-Bigas, Maxim V Frolov, Elizaveta V Benevolenskaya
Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer. Nature communications 12 (1) (2021)
Kirsten Szklany, Phillip A Engen, Ankur Naqib, Stefan J Green, Ali Keshavarzian, Alejandro Lopez Rincon, Cynthia J Siebrand, Mara A P Diks, Melanie van de Kaa, Johan Garssen, Leon M J Knippels, Aletta D Kraneveld
Dietary Supplementation throughout Life with Non-Digestible Oligosaccharides and/or n-3 Poly-Unsaturated Fatty Acids in Healthy Mice Modulates the Gut-Immune System-Brain Axis. Nutrients 14 (1) (2021)
Sarah L Chellappa, Phillip A Engen, Ankur Naqib, Jingyi Qian, Nina Vujovic, Nishath Rahman, Stefan J Green, Marta Garaulet, Ali Keshavarzian, Frank A J L Scheer
Proof-of-principle demonstration of endogenous circadian system and circadian misalignment effects on human oral microbiota. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 36 (1) (2021)
Jan Hubert, Marta Nesvorna, Stano Pekár, Stefan J Green, Pavel B Klimov
Cardinium inhibits Wolbachia in its mite host, Tyrophagus putrescentiae, and affects host fitness. FEMS microbiology ecology 97 (10) (2021)
Claudia E Oropeza, Grant Tarnow, Taha Y Taha, Rasha E Shalaby, Marieta V Hyde, Mark Maienschein-Cline, Stefan J Green, Alan McLachlan
Relative DNA Methylation and Demethylation Efficiencies during Postnatal Liver Development Regulate Hepatitis B Virus Biosynthesis. Journal of virology 95 (6) (2021)
Suzanne Abbring, Phillip A Engen, Ankur Naqib, Stefan J Green, Johan Garssen, Ali Keshavarzian, Betty C A M van Esch
Raw Milk-Induced Protection against Food Allergic Symptoms in Mice Is Accompanied by Shifts in Microbial Community Structure. International journal of molecular sciences 22 (7) (2021)
Jan Hubert, Marta Nesvorna, Stefan J Green, Pavel B Klimov
Microbial Communities of Stored Product Mites: Variation by Species and Population. Microbial ecology 81 (2) (2020)
Ana F Diallo, Mark B Lockwood, Katherine Anne Maki, Alexis T Franks, Abhrarup Roy, Rosario B Jaime-Lara, Paule Valery Joseph, Wendy A Henderson, Seon Yoon Chung, Jacqueline McGrath, Stefan J Green, Anne M Fink
Metabolic Profiling of Blood and Urine for Exploring the Functional Role of the Microbiota in Human Health. Biological research for nursing 22 (4) (2020)
Latania K Logan, Liqing Zhang, Stefan J Green, Samuel Dorevitch, Gustavo A Arango-Argoty, Kendrick Reme, Emily Garner, Jared Aldstadt, Yvette J Johnson-Walker, Mary K Hayden, Robert A Weinstein, Amy Pruden
A Pilot Study of Chicago Waterways as Reservoirs of Multidrug-Resistant Enterobacteriaceae (MDR-Ent) in a High-Risk Region for Community-Acquired MDR-Ent Infection in Children. Antimicrobial agents and chemotherapy 64 (4) (2020)
Supriya D Mehta, Drew R Nannini, Fredrick Otieno, Stefan J Green, Walter Agingu, Alan Landay, Yinan Zheng, Lifang Hou
Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women. mSystems 5 (4) (2020)
Jared D Hoffman, Lucille M Yanckello, George Chlipala, Tyler C Hammond, Scott D McCulloch, Ishita Parikh, Sydney Sun, Josh M Morganti, Stefan J Green, Ai-Ling Lin
Dietary inulin alters the gut microbiome, enhances systemic metabolism and reduces neuroinflammation in an APOE4 mouse model. PloS one 14 (8) (2019)
George E Chlipala, Zhengdeng Arden Lei, Mark Maienschein-Cline, Kevin Kunstman, Koh Okamoto, Stefan J Green, Kyle J Popovich
Complete Genome Sequence of a USA100 Methicillin-Resistant Staphylococcus aureus Strain. Microbiology resource announcements 8 (11) (2019)
Francine E Garrett-Bakelman, Manjula Darshi, Stefan J Green, Ruben C Gur, Ling Lin, Brandon R Macias, Miles J McKenna, Cem Meydan, Tejaswini Mishra, Jad Nasrini, Brian D Piening, Lindsay F Rizzardi, Kumar Sharma, Jamila H Siamwala, Lynn Taylor, Martha Hotz Vitaterna, Maryam Afkarian, Ebrahim Afshinnekoo, Sara Ahadi, Aditya Ambati, Maneesh Arya, Daniela Bezdan, Colin M Callahan, Songjie Chen, Augustine M K Choi, George E Chlipala, Kevin Contrepois, Marisa Covington, Brian E Crucian, Immaculata De Vivo, David F Dinges, Douglas J Ebert, Jason I Feinberg, Jorge A Gandara, Kerry A George, John Goutsias, George S Grills, Alan R Hargens, Martina Heer, Ryan P Hillary, Andrew N Hoofnagle, Vivian Y H Hook, Garrett Jenkinson, Peng Jiang, Ali Keshavarzian, Steven S Laurie, Brittany Lee-McMullen, Sarah B Lumpkins, Matthew MacKay, Mark G Maienschein-Cline, Ari M Melnick, Tyler Maxwell Moore, Kiichi Nakahira, Hemal H Patel, Robert Pietrzyk, Varsha Rao, Rintaro Saito, Denis N Salins, Jan M Schilling, Dorothy D Sears, Caroline K Sheridan, Michael B Stenger, Rakel Tryggvadottir, Alexander Eckehart Urban, Tomas Vaisar, Benjamin Van Espen, Jing Zhang, Michael G Ziegler, Sara R Zwart, John B Charles, Craig E Kundrot, Graham B I Scott, Susan M Bailey, Mathias Basner, Andrew P Feinberg, Stuart M C Lee, Christopher E Mason, Emmanuel Jean-Marie Mignot, Brinda K Rana, Scott M Smith, Michael P Snyder, Fred W Turek
The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight. Science (New York, N.Y.) 364 (6436) (2019)
Jana Braesel, Chase M Clark, Kevin J Kunstman, Stefan J Green, Mark Maienschein-Cline, Brian T Murphy, Alessandra S Eustáquio
Genome Sequence of Marine-Derived Streptomyces sp. Strain F001, a Producer of Akashin A and Diazaquinomycins. Microbiology resource announcements 8 (19) (2019)
Lea Sedghi, Craig Byron, Ryan Jennings, George E Chlipala, Stefan J Green, Laura Silo-Suh
Effect of Dietary Fiber on the Composition of the Murine Dental Microbiome. Dentistry journal 7 (2) (2019)
Katherine A Maki, Ana F Diallo, Mark B Lockwood, Alexis T Franks, Stefan J Green, Paule Valery Joseph
Considerations When Designing a Microbiome Study: Implications for Nursing Science. Biological research for nursing 21 (2) (2018)
David Ma, Amy C Wang, Ishita Parikh, Stefan J Green, Jared D Hoffman, George Chlipala, M Paul Murphy, Brent S Sokola, Björn Bauer, Anika M S Hartz, Ai-Ling Lin
Ketogenic diet enhances neurovascular function with altered gut microbiome in young healthy mice. Scientific reports 8 (1) (2018)
Faraz Bishehsari, Phillip A Engen, Nailliw Z Preite, Yunus E Tuncil, Ankur Naqib, Maliha Shaikh, Marco Rossi, Sherry Wilber, Stefan J Green, Bruce R Hamaker, Khashayarsha Khazaie, Robin M Voigt, Christopher B Forsyth, Ali Keshavarzian
Dietary Fiber Treatment Corrects the Composition of Gut Microbiota, Promotes SCFA Production, and Suppresses Colon Carcinogenesis. Genes 9 (2) (2018)
Guy R Adami, Christy C Tangney, Jessica L Tang, Yalu Zhou, Saba Ghaffari, Ankur Naqib, Saurabh Sinha, Stefan J Green, Joel L Schwartz
Effects of green tea on miRNA and microbiome of oral epithelium. Scientific reports 8 (1) (2018)
Ling Xiao, Belinda Van't Land, Phillip A Engen, Ankur Naqib, Stefan J Green, Angie Nato, Thea Leusink-Muis, Johan Garssen, Ali Keshavarzian, Bernd Stahl, Gert Folkerts
Human milk oligosaccharides protect against the development of autoimmune diabetes in NOD-mice. Scientific reports 8 (1) (2018)
Noa Barak-Gavish, Miguel José Frada, Chuan Ku, Peter A Lee, Giacomo R DiTullio, Sergey Malitsky, Asaph Aharoni, Stefan J Green, Ron Rotkopf, Elena Kartvelishvily, Uri Sheyn, Daniella Schatz, Assaf Vardi
Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP. Science advances 4 (10) (2018)
Vanessa C McFadden, Rasha E Shalaby, Saira Iram, Claudia E Oropeza, Jennifer A Landolfi, Alexander V Lyubimov, Mark Maienschein-Cline, Stefan J Green, Klaus H Kaestner, Alan McLachlan
Hepatic deficiency of the pioneer transcription factor FoxA restricts hepatitis B virus biosynthesis by the developmental regulation of viral DNA methylation. PLoS pathogens 13 (2) (2017)
Supriya D Mehta, Ashish K Pradhan, Stefan J Green, Ankur Naqib, Elijah Odoyo-June, Charlotte A Gaydos, Sheila Barry, Alan Landay, Robert C Bailey
Microbial Diversity of Genital Ulcers of HSV-2 Seropositive Women. Scientific reports 7 (1) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Stefan J Green