Marta Szachniuk (M Szachniuk)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 26

Top Venues

Nucleic acids research

BMC bioinformatics

PLoS computational biology

Bioinformatics (Oxford, England)

Poznan University of Technology

Poznan University of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Poznan University of Technology

Poland

Associate Professor :: Department of Computing

Institute of Bioorganic Chemistry, Polish Academy of Sciences Jan 01 2018

Poland

Head of the Department :: Department of Structural Bioinformatics

Education History

Poznan University of Technology

Poland

PHD

Poznan University of Technology

Poland

MSC

Poznan University of Technology

Poland

MSC

Publications

Bartosz Ambroży Greń, Maciej Antczak, Tomasz Zok, Joanna Ida Sulkowska, Marta Szachniuk
Knotted artifacts in predicted 3D RNA structures. PLoS computational biology 20 (6) (2024)
Michal Zurkowski, Mateusz Swiercz, Filip Wozny, Maciej Antczak, Marta Szachniuk
RNAhugs web server for customized 3D RNA structure alignment. Nucleic acids research 52 (W1) (2024)
Bartosz Ambroży Greń, Maciej Antczak, Tomasz Zok, Joanna Ida Sulkowska, Marta Szachniuk
Knotted artifacts in predicted 3D RNA structures. PLoS computational biology 20 (6) (2024)
Michal Zurkowski, Mateusz Swiercz, Filip Wozny, Maciej Antczak, Marta Szachniuk
RNAhugs web server for customized 3D RNA structure alignment. Nucleic acids research (2024)
Bartosz Ambroży Greń, Maciej Antczak, Tomasz Zok, Joanna Ida Sulkowska, Marta Szachniuk
Knotted artifacts in predicted 3D RNA structures. PLoS computational biology 20 (6) (2024)
Michal Zurkowski, Mateusz Swiercz, Filip Wozny, Maciej Antczak, Marta Szachniuk
RNAhugs web server for customized 3D RNA structure alignment. Nucleic acids research 52 (W1) (2024)
Joanna Sarzynska, Mariusz Popenda, Maciej Antczak, Marta Szachniuk
RNA tertiary structure prediction using RNAComposer in CASP15. Proteins (2023)
Bohdan Schneider, Blake Alexander Sweeney, Alex Bateman, Jiri Cerny, Tomasz Zok, Marta Szachniuk
When will RNA get its AlphaFold moment? Nucleic acids research (2023)
Bartosz Adamczyk, Michal Zurkowski, Marta Szachniuk, Tomasz Zok
WebTetrado: a webserver to explore quadruplexes in nucleic acid 3D structures. Nucleic acids research (2023)
Andriy Kryshtafovych, Maciej Antczak, Marta Szachniuk, Tomasz Zok, Rachael C Kretsch, Ramya Rangan, Phillip Pham, Rachel J Hagey, Xavier Robin, Gabriel Studer, Janani Durairaj, Jerome Eberhardt, Aaron Sweeney, Maya Topf, Torsten Schwede, Krzysztof Fidelis, John Moult
New prediction categories in CASP15. Proteins (2023)
Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk, Maciej Antczak
RNAspider: a webserver to analyze entanglements in RNA 3D structures. Nucleic acids research (2022)
Julita Gumna, Maciej Antczak, Ryszard W Adamiak, Janusz M Bujnicki, Shi-Jie Chen, Feng Ding, Pritha Ghosh, Jun Li, Sunandan Mukherjee, Chandran Nithin, Katarzyna Pachulska-Wieczorek, Almudena Ponce-Salvatierra, Mariusz Popenda, Joanna Sarzyńska, Tomasz K Wirecki, Dong Zhang, Sicheng Zhang, Tomasz Zok, Eric Westhof, Zhichiao Miao, Marta Szachniuk, Agnieszka Rybarczyk
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models. International journal of molecular sciences 23 (17) (2022)
Jakub Wiedemann, Jacek Kaczor, Maciej Milostan, Tomasz Zok, Jacek Blazewicz, Marta Szachniuk, Maciej Antczak
RNAloops: a database of RNA multiloops. Bioinformatics (Oxford, England) 38 (17) (2022)
Tomasz Zok, Natalia Kraszewska, Joanna Miskiewicz, Paulina Pielacinska, Michal Zurkowski, Marta Szachniuk
ONQUADRO: a database of experimentally determined quadruplex structures. Nucleic acids research 50 (D1) (2022)
Michal Zurkowski, Tomasz Zok, Marta Szachniuk
DrawTetrado to create layer diagrams of G4 structures. Bioinformatics (Oxford, England) 38 (15) (2022)
Bartosz Adamczyk, Maciej Antczak, Marta Szachniuk
RNAsolo: a repository of cleaned PDB-derived RNA 3D structures. Bioinformatics (Oxford, England) 38 (14) (2022)
Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Agnieszka Korpeta, Ryszard W Adamiak, Maciej Antczak, Marta Szachniuk
Entanglements of structure elements revealed in RNA 3D models. Nucleic acids research 49 (17) (2021)
Francisco Carrascoza, Maciej Antczak, Zhichiao Miao, Eric Westhof, Marta Szachniuk
Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions. RNA (New York, N.Y.) (2021)
Zhichiao Miao, Ryszard W Adamiak, Maciej Antczak, Michał J Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Clarence Yu Cheng, Yi Cheng, Fang-Chieh Chou, Rachel J Hagey, Nikolay V Dokholyan, Feng Ding, Caleb Geniesse, Yangwei Jiang, Astha Joshi, Andrey Krokhotin, Marcin Magnus, Olivier Mailhot, Francois Major, Thomas H Mann, Paweł Piątkowski, Radoslaw Pluta, Mariusz Popenda, Joanna Sarzyńska, Lizhen Sun, Marta Szachniuk, Siqi Tian, Jian Wang, Jun Wang, Andrew M Watkins, Jakub Wiedemann, Yi Xiao, Xiaojun Xu, Joseph D Yesselman, Dong Zhang, Yi Zhang, Zhenzhen Zhang, Chenhan Zhao, Peinan Zhao, Yuanzhe Zhou, Tomasz Zok, Adriana Żyła, Aiming Ren, Robert T Batey, Barbara L Golden, Lin Huang, David M J Lilley, Yijin Liu, Dinshaw J Patel, Eric Westhof
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers. RNA (New York, N.Y.) 26 (8) (2020)
Julita Gumna, Tomasz Zok, Kacper Figurski, Katarzyna Pachulska-Wieczorek, Marta Szachniuk
RNAthor - fast, accurate normalization, visualization and statistical analysis of RNA probing data resolved by capillary electrophoresis. PloS one 15 (10) (2020)
Tomasz Zok, Mariusz Popenda, Marta Szachniuk
ElTetrado: a tool for identification and classification of tetrads and quadruplexes. BMC bioinformatics 21 (1) (2020)
Agnieszka Belter, Mariusz Popenda, Marcin Piotr Sajek, Tomasz Wozniak, Mirosława Z Naskręt-Barciszewska, Marta Szachniuk, Stefan Jurga, Jan Barciszewski
A new molecular mechanism of RNA circularization and the microRNA sponge formation. Journal of biomolecular structure & dynamics (2020)
Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W Adamiak, Marta Szachniuk
RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures. BMC bioinformatics 19 (1) (2018)
Joanna Miskiewicz, Marta Szachniuk
Discovering Structural Motifs in miRNA Precursors from the Viridiplantae Kingdom. Molecules (Basel, Switzerland) 23 (6) (2018)
J Miskiewicz, K Tomczyk, A Mickiewicz, J Sarzynska, Marta Szachniuk
Bioinformatics Study of Structural Patterns in Plant MicroRNA Precursors. BioMed research international 2017 (2017)
Jakub Wiedemann, Tomasz Zok, Maciej Milostan, Marta Szachniuk
LCS-TA to identify similar fragments in RNA 3D structures. BMC bioinformatics 18 (1) (2017)

Marta Szachniuk.css-eqlu8i{font-size:small;padding-left:4px;} (M Szachniuk)

Publication Activity (10 Years)

Top Topics

Top Venues

Marta Szachniuk (M Szachniuk)