Zhichiao Miao (Zhichao Miao)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 31

Top Venues

Nature communications

Nucleic acids research

RNA (New York, N.Y.)

bioRxiv : the preprint server for biology

European Bioinformatics Institute

Chinese Academy of Sciences (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

European Bioinformatics Institute Aug 15 2016

United Kingdom

Postdoctoral fellow

Wellcome Trust Sanger Institute Aug 15 2016 - Aug 14 2019

United Kingdom

Visiting Scientist

Institut de Biologie Moléculaire et Cellulaire Oct 01 2012 - Oct 01 2016

France

Chercheur :: UPR9002

University of Strasbourg Oct 01 2012 - Sep 30 2016

France

Chercheur :: UPR9002

Education History

Chinese Academy of Sciences

China

PHD :: Institute of Biophysics

Harbin Institute of Technology

China

BSC :: Bio-engneering

Publications

Anna Vathrakokoili-Pournara, Zhichiao Miao, Ozgur Yilimaz Beker, Nadja Nolte, Alvis Brazma, Irene Papatheodorou
CATD: a reproducible pipeline for selecting cell-type deconvolution methods across tissues. Bioinformatics advances 4 (1) (2024)
Xinyue Chen, Yin Huang, Liangfeng Huang, Ziliang Huang, Zhao-Zhe Hao, Lahong Xu, Nana Xu, Zhi Li, Yong-Gao Mou, Mingli Ye, Renke You, Xuegong Zhang, Sheng Liu, Zhichiao Miao
A brain cell atlas integrating single-cell transcriptomes across human brain regions. Nature medicine (2024)
Jie Zhang, Gongcheng Hu, Yuli Lu, Huawei Ren, Yin Huang, Yulin Wen, Binrui Ji, Diyang Wang, Haidong Wang, Huisheng Liu, Ning Ma, Ling-Ling Zhang, Guangjin Pan, Yibo Qu, Hua Wang, Wei Zhang, Zhichiao Miao, Hongjie Yao
CTCF mutation at R567 causes developmental disorders via 3D genome rearrangement and abnormal neurodevelopment. Nature communications 15 (1) (2024)
Jie Zhang, Gongcheng Hu, Yuli Lu, Huawei Ren, Yin Huang, Yulin Wen, Binrui Ji, Diyang Wang, Haidong Wang, Huisheng Liu, Ning Ma, Ling-Ling Zhang, Guangjin Pan, Yibo Qu, Hua Wang, Wei Zhang, Zhichiao Miao, Hongjie Yao
CTCF mutation at R567 causes developmental disorders via 3D genome rearrangement and abnormal neurodevelopment. Nature communications 15 (1) (2024)
Jie Zhang, Gongcheng Hu, Yuli Lu, Huawei Ren, Yin Huang, Yulin Wen, Binrui Ji, Diyang Wang, Haidong Wang, Huisheng Liu, Ning Ma, Ling-Ling Zhang, Guangjin Pan, Yibo Qu, Hua Wang, Wei Zhang, Zhichiao Miao, Hongjie Yao
CTCF mutation at R567 causes developmental disorders via 3D genome rearrangement and abnormal neurodevelopment. Nature communications 15 (1) (2024)
Anna Vathrakokoili-Pournara, Zhichiao Miao, Ozgur Yilimaz Beker, Nadja Nolte, Alvis Brazma, Irene Papatheodorou
CATD: a reproducible pipeline for selecting cell-type deconvolution methods across tissues. Bioinformatics advances 4 (1) (2024)
Jie Zhang, Gongcheng Hu, Yuli Lu, Huawei Ren, Yin Huang, Yulin Wen, Binrui Ji, Diyang Wang, Haidong Wang, Huisheng Liu, Ning Ma, Ling-Ling Zhang, Guangjin Pan, Yibo Qu, Hua Wang, Wei Zhang, Zhichiao Miao, Hongjie Yao
CTCF mutation at R567 causes developmental disorders via 3D genome rearrangement and abnormal neurodevelopment. Nature communications 15 (1) (2024)
Anne Molitor, Alexandre Lederle, Mirjana Radosavljevic, Vinay Sapuru, Megan E Zavorka Thomas, Jianying Yang, Mahsa Shirin, Virginie Collin-Bund, Katerina Jerabkova-Roda, Zhichiao Miao, Alice Bernard, Véronique Rolli, Pierre Grenot, Carla Noemi Castro, Michelle Rosenzwajg, Elyssa G Lewis, Richard Person, Uxía-Saraiva Esperón-Moldes, Milja Kaare, Pekka T Nokelainen, Nurit Assia Batzir, Gal Zaks Hoffer, Nicodème Paul, Tristan Stemmelen, Lydie Naegely, Antoine Hanauer, Sabrina Bibi-Triki, Sarah Grün, Sophie Jung, Ignacio Busnelli, Kornelia Tripolszki, Ruslan Al-Ali, Natalia Ordonez, Peter Bauer, Eunkyung Song, Kristin N Zajo, Santiago Partida-Sanchez, Frank H Robledo-Avila, Attila Kumánovics, Yoram Louzoun, Aurélie Hirschler, Angélique Pichot, Ori Toker, Cesar Andrés Muñoz Mejía, Nima Parvaneh, Esther Knapp, Joseph H Hersh, Heather Kenney, Ottavia Maria Delmonte, Luigi Daniele Notarangelo, Jacky G Goetz, Samir B Kahwash, Christine Carapito, Rajinder P S Bajwa, Caroline Thomas, Stephan Ehl, Bertrand Isidor, Raphaël Carapito, Roshini S Abraham, Richard K Hite, Nufar Marcus, Aida Bertoli-Avella, Seiamak Bahram
A pleiotropic recurrent dominant ITPR3 variant causes a complex multisystemic disease. Science advances 10 (37) (2024)
Anna Vathrakokoili-Pournara, Zhichiao Miao, Ozgur Yilimaz Beker, Nadja Nolte, Alvis Brazma, Irene Papatheodorou
CATD: a reproducible pipeline for selecting cell-type deconvolution methods across tissues. Bioinformatics advances 4 (1) (2024)
Rachel J Hagey, Rachael C Kretsch, Adam J Simpkin, Thomas Mulvaney, Phillip Pham, Ramya Rangan, Fan Bu, Ronan M Keegan, Andriy Kryshtafovych, Daniel J Rigden, Zhichiao Miao, Eric Westhof
Assessment of three-dimensional RNA structure prediction in CASP15. bioRxiv : the preprint server for biology (2023)
Rachel J Hagey, Rachael C Kretsch, Adam J Simpkin, Thomas Mulvaney, Phillip Pham, Ramya Rangan, Fan Bu, Ronan M Keegan, Andriy Kryshtafovych, Daniel J Rigden, Zhichiao Miao, Eric Westhof
Assessment of three-dimensional RNA structure prediction in CASP15. Proteins (2023)
Rachel J Hagey, Rachael C Kretsch, Adam J Simpkin, Thomas Mulvaney, Phillip Pham, Ramya Rangan, Fan Bu, Ronan M Keegan, Andriy Kryshtafovych, Daniel J Rigden, Zhichiao Miao, Eric Westhof
Assessment of three-dimensional RNA structure prediction in CASP15. bioRxiv : the preprint server for biology (2023)
Rachel J Hagey, Rachael C Kretsch, Adam J Simpkin, Thomas Mulvaney, Phillip Pham, Ramya Rangan, Fan Bu, Ronan M Keegan, Andriy Kryshtafovych, Daniel J Rigden, Zhichiao Miao, Eric Westhof
Assessment of three-dimensional RNA structure prediction in CASP15. bioRxiv : the preprint server for biology (2023)
Yuyao Song, Zhichiao Miao, Alvis Brazma, Irene Papatheodorou
Benchmarking strategies for cross-species integration of single-cell RNA sequencing data. Nature communications 14 (1) (2023)
Fan Bu, Xiaowei Lin, Wenjian Liao, Zhizhong Lu, Yuanlin He, Yuhang Luo, Xuemei Peng, Mengxiao Li, Yuanyin Huang, Xiaoxue Chen, Bowen Xiao, Jiuhong Jiang, Jie Deng, Jian Huang, Tianxin Lin, Zhichiao Miao, Lin Huang
Ribocentre-switch: a database of riboswitches. Nucleic acids research (2023)
Brandon T Wesley, Alexander D B Ross, Daniele Muraro, Zhichiao Miao, Sarah H Saxton, Rute A Tomaz, Carola M Morell, Katherine Ridley, Ekaterini D Zacharis, Sandra Petrus-Reurer, Judith Kraiczy, Krishnaa T A Mahbubani, Stephanie Brown, Jose Garcia-Bernardo, Clara Alsinet, Daniel J Gaffney, Dave Horsfall, Olivia C Tysoe, Rachel Anne Botting, Emily Stephenson, Dorin-Mirel Popescu, Sonya A MacParland, Gary D Baider, Ian D McGilvray, Daniel Ortmann, Fotios Sampaziotis, Kourosh Saeb Parsy, Muzlifah A Haniffa, Kelly R Stevens, Matthias Zilbauer, Sarah A Teichmann, Ludovic Vallier
Single-cell atlas of human liver development reveals pathways directing hepatic cell fates. Nature cell biology 24 (10) (2022)
Julita Gumna, Maciej Antczak, Ryszard W Adamiak, Janusz M Bujnicki, Shi-Jie Chen, Feng Ding, Pritha Ghosh, Jun Li, Sunandan Mukherjee, Chandran Nithin, Katarzyna Pachulska-Wieczorek, Almudena Ponce-Salvatierra, Mariusz Popenda, Joanna Sarzyńska, Tomasz K Wirecki, Dong Zhang, Sicheng Zhang, Tomasz Zok, Eric Westhof, Zhichiao Miao, Marta Szachniuk, Agnieszka Rybarczyk
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models. International journal of molecular sciences 23 (17) (2022)
Jia-Ru Wei, Zhao-Zhe Hao, Chuan Xu, Mengyao Huang, Lei Tang, Nana Xu, Ruifeng Liu, Yuhui Shen, Sarah A Teichmann, Zhichiao Miao, Sheng Liu
Identification of visual cortex cell types and species differences using single-cell RNA sequencing. Nature communications 13 (1) (2022)
Jie Deng, Yaohuang Shi, Xuemei Peng, Yuanlin He, Xiaoxue Chen, Mengxiao Li, Xiaowei Lin, Wenjian Liao, Yuanyin Huang, Taijiao Jiang, David M J Lilley, Zhichiao Miao, Lin Huang
Ribocentre: a database of ribozymes. Nucleic acids research (2022)
Zhao-Zhe Hao, Jia-Ru Wei, Dongchang Xiao, Ruifeng Liu, Nana Xu, Lei Tang, Mengyao Huang, Yuhui Shen, Changsheng Xing, Wanjing Huang, Xialin Liu, Mengqing Xiang, Yizhi Liu, Zhichiao Miao, Sheng Liu
Single-cell transcriptomics of adult macaque hippocampus reveals neural precursor cell populations. Nature neuroscience 25 (6) (2022)
Pablo Moreno, Ni Huang, Jonathan R Manning, Suhaib Mohammed, Andrey Solovyev, Krzysztof Polański, Wendi Bacon, Ruben Chazarra, Carlos Talavera-López, Maria A Doyle, Guilhem Marnier, Bjoern Andreas Gruening, Helena Rasche, Nancy George, Silvie Korena Fexova, Mohamed Alibi, Zhichiao Miao, Yasset Perez Riverol, Maximilian Haeussler, Alvis Brazma, Sarah A Teichmann, Kerstin B Meyer, Irene Papatheodorou
User-friendly, scalable tools and workflows for single-cell RNA-seq analysis. Nature methods 18 (4) (2021)
Liora Haim-Vilmovsky, Johan Henriksson, Jennifer A Walker, Zhichiao Miao, Eviatar Natan, Gozde Kar, Simon Clare, Jillian L Barlow, Evelina Charidemou, Lira Mamanova, Xi Chen, Valentina Proserpio, Jhuma Pramanik, Steven Woodhouse, Anna V Protasio, Mirjana Efremova, Julian L Griffin, Matthew Berriman, Gordon Dougan, Jasmin Fisher, John C Marioni, Andrew N J McKenzie, Sarah A Teichmann
Mapping Rora expression in resting and activated CD4+ T cells. PloS one 16 (5) (2021)
Lira Mamanova, Zhichiao Miao, Ayesha Jinat, Peter Ellis, Lesley Shirley, Sarah A Teichmann
High-throughput full-length single-cell RNA-seq automation. Nature protocols 16 (6) (2021)
Pablo Moreno, Silvie Fexova, Nancy George, Jonathan R Manning, Zhichiao Miao, Suhaib Mohammed, Alfonso Muñoz-Pomer, Anja Füllgrabe, Yalan Bi, Natassja Bush, Haider Iqbal, Upendra Kumbham, Andrey Solovyev, Lingyun Zhao, Ananth Prakash, David García-Seisdedos, Deepti J Kundu, Shengbo Wang, Mathias Walzer, Laura Clarke, David Osumi-Sutherland, Marcela Karey Tello-Ruiz, Sunita Kumari, Doreen Ware, Jana Eliasova, Mark J Arends, Martijn C Nawijn, Kerstin Meyer, Tony Burdett, John C Marioni, Sarah Teichmann, Juan Antonio Vizcaino, Alvis Brazma, Irene Papatheodorou
Expression Atlas update: gene and protein expression in multiple species. Nucleic acids research (2021)
Francisco Carrascoza, Maciej Antczak, Zhichiao Miao, Eric Westhof, Marta Szachniuk
Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions. RNA (New York, N.Y.) (2021)
Zhichiao Miao, Ryszard W Adamiak, Maciej Antczak, Michał J Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Clarence Yu Cheng, Yi Cheng, Fang-Chieh Chou, Rachel J Hagey, Nikolay V Dokholyan, Feng Ding, Caleb Geniesse, Yangwei Jiang, Astha Joshi, Andrey Krokhotin, Marcin Magnus, Olivier Mailhot, Francois Major, Thomas H Mann, Paweł Piątkowski, Radoslaw Pluta, Mariusz Popenda, Joanna Sarzyńska, Lizhen Sun, Marta Szachniuk, Siqi Tian, Jian Wang, Jun Wang, Andrew M Watkins, Jakub Wiedemann, Yi Xiao, Xiaojun Xu, Joseph D Yesselman, Dong Zhang, Yi Zhang, Zhenzhen Zhang, Chenhan Zhao, Peinan Zhao, Yuanzhe Zhou, Tomasz Zok, Adriana Żyła, Aiming Ren, Robert T Batey, Barbara L Golden, Lin Huang, David M J Lilley, Yijin Liu, Dinshaw J Patel, Eric Westhof
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers. RNA (New York, N.Y.) 26 (8) (2020)
Amjad Khan, Zhichiao Miao, Muhammad Umair, Amir Ullah, Mohammad A Alshabeeb, Muhammad Bilal, Farooq Ahmad, Gudrun A Rappold, Muhammad Ansar, Raphaël Carapito
Two Cases of Recessive Intellectual Disability Caused by NDST1 and METTL23 Variants. Genes 11 (9) (2020)
Zhichiao Miao, Antonin Tidu, Gilbert Eriani, Franck Martin
Secondary structure of the SARS-CoV-2 5'-UTR. RNA biology 18 (4) (2020)
Zhichiao Miao, Pablo Moreno, Ni Huang, Irene Papatheodorou, Alvis Brazma, Sarah A Teichmann
Putative cell type discovery from single-cell gene expression data. Nature methods 17 (6) (2020)
Zhichiao Miao, Ryszard W Adamiak, Maciej Antczak, Robert T Batey, Alexander J Becka, Marcin Biesiada, Michał J Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Clarence Yu Cheng, Fang-Chieh Chou, Adrian R Ferré-D'Amaré, Rhiju Das, Wayne K Dawson, Feng Ding, Nikolay V Dokholyan, Stanisław Dunin-Horkawicz, Caleb Geniesse, Kalli Kappel, Wipapat Kladwang, Andrey Krokhotin, Grzegorz E Łach, François Major, Thomas H Mann, Marcin Magnus, Katarzyna Pachulska-Wieczorek, Dinshaw J Patel, Joseph A Piccirilli, Mariusz Popenda, Katarzyna J Purzycka, Aiming Ren, Greggory M Rice, John Santalucia, Joanna Sarzyńska, Marta Szachniuk, Arpit Tandon, Jeremiah J Trausch, Siqi Tian, Jian Wang, Kevin M Weeks, Benfeard Williams, Yi Xiao, Xiaojun Xu, Dong Zhang, Tomasz Zok, Eric Westhof
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme. RNA (New York, N.Y.) 23 (5) (2017)
Zhichiao Miao, Eric Westhof
RBscore&NBench: a high-level web server for nucleic acid binding residues prediction with a large-scale benchmarking database. Nucleic acids research 44 (W1) (2016)

Zhichiao Miao.css-eqlu8i{font-size:small;padding-left:4px;} (Zhichao Miao)

Publication Activity (10 Years)

Top Topics

Top Venues

Zhichiao Miao (Zhichao Miao)