Surag Nair

Publication Activity (10 Years)

Years Active: 2021-2023
Publications (10 Years): 7

Top Topics

Neural Stem Cells

Gene Expression

Top Venues

Bioinformatics (Oxford, England)

Proceedings of the National Academy of Sciences of the United States of America

Nature genetics

Nucleic acids research

This page only lists publications with an associated author ORCID identifier.

Publications

Robin W Yeo, Olivia Y Zhou, Brian L Zhong, Eric D Sun, Paloma Navarro Negredo, Surag Nair, Mahfuza Sharmin, Tyson J Ruetz, Mikaela Wilson, Anshul Kundaje, Alexander R Dunn, Anne Brunet
Chromatin accessibility dynamics of neurogenic niche cells reveal defects in neural stem cell adhesion and migration during aging. Nature aging (2023)
Surag Nair, Mohamed Ameen, Laksshman Sundaram, Anusri Pampari, Jacob Schreiber, Akshay Balsubramani, Yu Xin Wang, David Burns, Helen M Blau, Ioannis Karakikes, Kevin C Wang, Anshul Kundaje
Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency. bioRxiv : the preprint server for biology (2023)
Surag Nair, Arjun Barrett, Daofeng Li, Brian J Raney, Brian T Lee, Peter Kerpedjiev, Vivekanandan Ramalingam, Anusri Pampari, Fritz Lekschas, Ting Wang, Maximilian Haeussler, Anshul Kundaje
The dynseq browser track shows context-specific features at nucleotide resolution. Nature genetics 54 (11) (2022)
Jacob Schreiber, Surag Nair, Akshay Balsubramani, Anshul Kundaje
Accelerating in silico saturation mutagenesis using compressed sensing. Bioinformatics (Oxford, England) 38 (14) (2022)
Adam Frankish, Sílvia Carbonell-Sala, Mark E Diekhans, Irwin Jungreis, Jane E Loveland, Jonathan M Mudge, Cristina Sisu, James C Wright, Carme Arnan, If Barnes, Abhimanyu Banerjee, Ruth Bennett, Andrew Berry, Alexandra Bignell, Carles Boix, Ferriol Calvet, Daniel Cerdán-Vélez, Fiona Cunningham, Claire Davidson, Sarah Donaldson, Cagatay Dursun, Reham Fatima, Stefano Giorgetti, Carlos Garcıa Giron, Jose Manuel Gonzalez, Matthew Hardy, Peter W Harrison, Thibaut Hourlier, Zoe Hollis, Toby Hunt, Benjamin James, Yunzhe Jiang, Rory Johnson, Mike Kay, Julien Lagarde, Fergal J Martin, Laura Martínez Gómez, Surag Nair, Pengyu Ni, Fernando Pozo, Vivek Ramalingam, Magali Ruffier, Bianca M Schmitt, Jacob M Schreiber, Emily Steed, Marie-Marthe Suner, Dulika Sumathipala, Irina Sycheva, Barbara Uszczynska-Ratajczak, Elizabeth Wass, Yucheng T Yang, Andrew D Yates, Zahoor Zafrulla, Jyoti S Choudhary, Mark Gerstein, Roderic Guigo, Tim J P Hubbard, Manolis Kellis, Anshul Kundaje, Benedict Paten, Michael Liam Tress, Paul Flicek
GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic acids research (2022)
Surag Nair, Avanti Shrikumar, Jacob Schreiber, Anshul Kundaje
fastISM: performant in silico saturation mutagenesis for convolutional neural networks. Bioinformatics (Oxford, England) 38 (9) (2022)
Glenn J Markov, Thach Mai, Surag Nair, Anna Shcherbina, Yu Xin Wang, David M Burns, Anshul Kundaje, Helen M Blau
AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency. Proceedings of the National Academy of Sciences of the United States of America 118 (23) (2021)