Fiona Cunningham

ORCID

Publication Activity (10 Years)

Years Active: 2014-2022
Publications (10 Years): 14

Top Venues

Nucleic acids research

Human mutation

Nature communications

Molecular genetics & genomic medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Julia Foreman, Simon Brent, Daniel Perrett, Andrew P Bevan, Sarah E Hunt, Fiona Cunningham, Matthew E Hurles, Helen V Firth
DECIPHER: Supporting the interpretation and sharing of rare disease phenotype-linked variant data to advance diagnosis and research. Human mutation 43 (6) (2022)
Joannella Morales, Shashikant Pujar, Jane E Loveland, Alex Astashyn, Ruth Bennett, Andrew Berry, Eric Cox, Claire Davidson, Olga Ermolaeva, Catherine M Farrell, Reham Fatima, Laurent Gil, Tamara Goldfarb, Jose Manuel Gonzalez, Diana Haddad, Matthew Hardy, Toby Hunt, John Jackson, Vinita S Joardar, Michael Kay, Vamsi K Kodali, Kelly M McGarvey, Aoife McMahon, Jonathan M Mudge, Daniel N Murphy, Michael R Murphy, Bhanu Rajput, Sanjida H Rangwala, Lillian D Riddick, Françoise Thibaud-Nissen, Glen Threadgold, Anjana R Vatsan, Craig Wallin, David Webb, Paul Flicek, Ewan Birney, Kim D Pruitt, Adam Frankish, Fiona Cunningham, Terence D Murphy
A joint NCBI and EMBL-EBI transcript set for clinical genomics and research. Nature 604 (7905) (2022)
Fergal J Martin, M Ridwan Amode, Alisha Aneja, Olanrewaju Austine-Orimoloye, Andrey G Azov, If Barnes, Arne Becker, Ruth Bennett, Andrew Berry, Jyothish Bhai, Simarpreet Kaur Bhurji, Alexandra Bignell, Sanjay Boddu, Paulo R Branco Lins, Lucy Brooks, Shashank Budhanuru Ramaraju, Mehrnaz Charkhchi, Alexander Cockburn, Luca Da Rin Fiorretto, Claire Davidson, Kamalkumar Dodiya, Sarah Donaldson, Bilal El Houdaigui, Tamara El Naboulsi, Reham Fatima, Carlos Garcıa Giron, Thiago Genez, Gurpreet S Ghattaoraya, Jose Gonzalez Martinez, Cristi Guijarro, Matthew Hardy, Zoe Hollis, Thibaut Hourlier, Toby Hunt, Mike Kay, Vinay Kaykala, Tuan Le, Diana Lemos, Diego Marques-Coelho, José Carlos Marugán, Gabriela Alejandra Merino, Louisse Paola Mirabueno, Aleena Mushtaq, Syed Nakib Hossain, Denye N Ogeh, Manoj Pandian Sakthivel, Anne Parker, Malcolm Perry, Ivana Piližota, Irina Prosovetskaia, José G Pérez-Silva, Ahamed Imran Abdul Salam, Nuno Saraiva-Agostinho, Helen Schuilenburg, Dan Sheppard, Swati Sinha, Botond Sipos, William Stark, Emily Steed, Ranjit Sukumaran, Dulika Sumathipala, Marie-Marthe Suner, Likhitha Surapaneni, Kyösti Sutinen, Michal Szpak, Francesca Floriana Tricomi, David Urbina-Gómez, Andres Veidenberg, Thomas A Walsh, Brandon Walts, Elizabeth Wass, Natalie Willhoft, Jamie Allen, Jorge Alvarez-Jarreta, Marc Chakiachvili, Bethany Flint, Stefano Giorgetti, Leanne Haggerty, Garth R Ilsley, Jane E Loveland, Benjamin Moore, Jonathan M Mudge, John Tate, David Thybert, Stephen J Trevanion, Andrea Winterbottom, Adam Frankish, Sarah E Hunt, Magali Ruffier, Fiona Cunningham, Sarah Dyer, Robert D Finn, Kevin L Howe, Peter W Harrison, Andrew D Yates, Paul Flicek
Ensembl 2023. Nucleic acids research (2022)
Elliot Sollis, Abayomi Mosaku, Ala Abid, Annalisa Buniello, Maria Cerezo, Laurent Gil, Tudor Groza, Osman Güneş, Peggy Hall, James D Hayhurst, Arwa Ibrahim, Yue Ji, Sajo John, Elizabeth Lewis, Jacqueline A L MacArthur, Aoife C McMahon, David Osumi-Sutherland, Kalliope Panoutsopoulou, Zoë Pendlington, Santhi Ramachandran, Ray Stefancsik, Jonathan Stewart, Patricia L Whetzel, Robert Wilson, Lucia A Hindorff, Fiona Cunningham, Samuel A Lambert, Michael Inouye, Helen Parkinson, Laura W Harris
The NHGRI-EBI GWAS Catalog: knowledgebase and deposition resource. Nucleic acids research (2022)
Adam Frankish, Sílvia Carbonell-Sala, Mark E Diekhans, Irwin Jungreis, Jane E Loveland, Jonathan M Mudge, Cristina Sisu, James C Wright, Carme Arnan, If Barnes, Abhimanyu Banerjee, Ruth Bennett, Andrew Berry, Alexandra Bignell, Carles Boix, Ferriol Calvet, Daniel Cerdán-Vélez, Fiona Cunningham, Claire Davidson, Sarah Donaldson, Cagatay Dursun, Reham Fatima, Stefano Giorgetti, Carlos Garcıa Giron, Jose Manuel Gonzalez, Matthew Hardy, Peter W Harrison, Thibaut Hourlier, Zoe Hollis, Toby Hunt, Benjamin James, Yunzhe Jiang, Rory Johnson, Mike Kay, Julien Lagarde, Fergal J Martin, Laura Martínez Gómez, Surag Nair, Pengyu Ni, Fernando Pozo, Vivek Ramalingam, Magali Ruffier, Bianca M Schmitt, Jacob M Schreiber, Emily Steed, Marie-Marthe Suner, Dulika Sumathipala, Irina Sycheva, Barbara Uszczynska-Ratajczak, Elizabeth Wass, Yucheng T Yang, Andrew D Yates, Zahoor Zafrulla, Jyoti S Choudhary, Mark Gerstein, Roderic Guigo, Tim J P Hubbard, Manolis Kellis, Anshul Kundaje, Benedict Paten, Michael Liam Tress, Paul Flicek
GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic acids research (2022)
Joannella Morales, Aoife C McMahon, Jane E Loveland, Emily Perry, Adam Frankish, Sarah E Hunt, Irina M Armean, Paul Flicek, Fiona Cunningham
The value of primary transcripts to the clinical and non-clinical genomics community: Survey results and roadmap for improvements. Molecular genetics & genomic medicine (2021)
Fiona Cunningham, James E Allen, Jamie Allen, Jorge Alvarez-Jarreta, M Ridwan Amode, Irina M Armean, Olanrewaju Austine-Orimoloye, Andrey G Azov, If Barnes, Ruth Bennett, Andrew Berry, Jyothish Bhai, Alexandra Bignell, Konstantinos Billis, Sanjay Boddu, Lucy Brooks, Mehrnaz Charkhchi, Carla Cummins, Luca Da Rin Fioretto, Claire Davidson, Kamalkumar Dodiya, Sarah Donaldson, Bilal El Houdaigui, Tamara El Naboulsi, Reham Fatima, Carlos Garcıa Giron, Thiago Genez, Jose Gonzalez Martinez, Cristina Guijarro-Clarke, Arthur Gymer, Matthew Hardy, Zoe Hollis, Thibaut Hourlier, Toby Hunt, Thomas Juettemann, Vinay Kaikala, Mike Kay, Ilias Lavidas, Tuan Le, Diana Lemos, José Carlos Marugán, Shamika Mohanan, Aleena Mushtaq, Marc Naven, Denye N Ogeh, Anne Parker, Andrew Parton, Malcolm Perry, Ivana Piližota, Irina Prosovetskaia, Manoj Pandian Sakthivel, Ahamed Imran Abdul Salam, Bianca M Schmitt, Helen Schuilenburg, Dan Sheppard, José G Pérez-Silva, William Stark, Emily Steed, Kyösti Sutinen, Ranjit Sukumaran, Dulika Sumathipala, Marie-Marthe Suner, Michal Szpak, Anja Thormann, Francesca Floriana Tricomi, David Urbina-Gómez, Andres Veidenberg, Thomas A Walsh, Brandon Walts, Natalie Willhoft, Andrea Winterbottom, Elizabeth Wass, Marc Chakiachvili, Bethany Flint, Adam Frankish, Stefano Giorgetti, Leanne Haggerty, Sarah E Hunt, Garth R IIsley, Jane E Loveland, Fergal J Martin, Benjamin Moore, Jonathan M Mudge, Matthieu Muffato, Emily Perry, Magali Ruffier, John Tate, David Thybert, Stephen J Trevanion, Sarah Dyer, Peter W Harrison, Kevin L Howe, Andrew D Yates, Daniel R Zerbino, Paul Flicek
Ensembl 2022. Nucleic acids research (2021)
Timothee Cezard, Fiona Cunningham, Sarah E Hunt, Baron Koylass, Nitin Kumar, Gary Saunders, April Shen, Andres F Silva, Kirill Tsukanov, Sundararaman Venkataraman, Paul Flicek, Helen Parkinson, Thomas M Keane
The European Variation Archive: a FAIR resource of genomic variation for all species. Nucleic acids research (2021)
Sarah E Hunt, Benjamin Moore, Ridwan M Amode, Irina M Armean, Diana Lemos, Aleena Mushtaq, Andrew Parton, Helen Schuilenburg, Michał Szpak, Anja Thormann, Emily Perry, Stephen J Trevanion, Paul Flicek, Andrew D Yates, Fiona Cunningham
Annotating and prioritizing genomic variants using the Ensembl Variant Effect Predictor-A tutorial. Human mutation (2021)
Anja Thormann, Mihail Halachev, William McLaren, David J Moore, Victoria Svinti, Archie I Campbell, Shona M Kerr, Marc Tischkowitz, Sarah E Hunt, Malcolm G Dunlop, Matthew E Hurles, Caroline Fiona Wright, Helen V Firth, Fiona Cunningham, David R FitzPatrick
Flexible and scalable diagnostic filtering of genomic variants using G2P with Ensembl VEP. Nature communications 10 (1) (2019)
William Spooner, William McLaren, Timothy Slidel, Donna K Finch, Robin Butler, Jamie Campbell, Laura Eghobamien, David Rider, Christine Mione Kiefer, Matthew J Robinson, Colin Hardman, Fiona Cunningham, Tristan Vaughan, Paul Flicek, Catherine Chaillan Huntington
Haplosaurus computes protein haplotypes for use in precision drug design. Nature communications 9 (1) (2018)
Jacqueline MacArthur, Emily Bowler, Maria Cerezo, Laurent Gil, Peggy Hall, Emma Hastings, Heather Junkins, Aoife McMahon, Annalisa Milano, Joannella Morales, Zoe May Pendlington, Danielle Welter, Tony Burdett, Lucia Hindorff, Paul Flicek, Fiona Cunningham, Helen Parkinson
The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). Nucleic acids research 45 (D1) (2016)
Bronwen L Aken, Premanand Achuthan, Wasiu A Akanni, M Ridwan Amode, Friederike Bernsdorff, Jyothish Bhai, Konstantinos Billis, Denise Carvalho-Silva, Carla Cummins, Peter Clapham, Laurent Gil, Carlos Garcıa Giron, Leo Gordon, Thibaut Hourlier, Sarah E Hunt, Sophie H Janacek, Thomas Juettemann, Stephen Keenan, Matthew R Laird, Ilias Lavidas, Thomas Maurel, William McLaren, Benjamin Moore, Daniel N Murphy, Rishi Nag, Victoria Newman, Michael Nuhn, Chuang Kee Ong, Anne Parker, Mateus Patricio, Harpreet Singh Riat, Daniel Sheppard, Helen Sparrow, Kieron Taylor, Anja Thormann, Alessandro Vullo, Brandon Walts, Steven P Wilder, Amonida Zadissa, Myrto Kostadima, Fergal J Martin, Matthieu Muffato, Emily Perry, Magali Ruffier, Daniel M Staines, Stephen J Trevanion, Fiona Cunningham, Andrew Yates, Daniel R Zerbino, Paul Flicek
Ensembl 2017. Nucleic acids research 45 (D1) (2016)
Andrew Yates, Wasiu A Akanni, M Ridwan Amode, Daniel Barrell, Konstantinos Billis, Denise Carvalho-Silva, Carla Cummins, Peter Clapham, Stephen Fitzgerald, Laurent Gil, Carlos García Girón, Leo Gordon, Thibaut Hourlier, Sarah E Hunt, Sophie H Janacek, Nathan Johnson, Thomas Juettemann, Stephen Keenan, Ilias Lavidas, Fergal J Martin, Thomas Maurel, William McLaren, Daniel N Murphy, Rishi Nag, Michael Nuhn, Anne Parker, Mateus Patricio, Miguel Pignatelli, Matthew Rahtz, Harpreet Singh Riat, Daniel Sheppard, Kieron Taylor, Anja Thormann, Alessandro Vullo, Steven P Wilder, Amonida Zadissa, Ewan Birney, Jennifer Harrow, Matthieu Muffato, Emily Perry, Magali Ruffier, Giulietta Spudich, Stephen J Trevanion, Fiona Cunningham, Bronwen L Aken, Daniel R Zerbino, Paul Flicek
Ensembl 2016. Nucleic acids research 44 (D1) (2015)
Fiona Cunningham, M Ridwan Amode, Daniel Barrell, Kathryn Beal, Konstantinos Billis, Simon Brent, Denise Carvalho-Silva, Peter Clapham, Guy Coates, Stephen Fitzgerald, Laurent Gil, Carlos García Girón, Leo Gordon, Thibaut Hourlier, Sarah E Hunt, Sophie H Janacek, Nathan Johnson, Thomas Juettemann, Andreas K Kähäri, Stephen Keenan, Fergal J Martin, Thomas Maurel, William McLaren, Daniel N Murphy, Rishi Nag, Bert Overduin, Anne Parker, Mateus Patricio, Emily Perry, Miguel Pignatelli, Harpreet Singh Riat, Daniel Sheppard, Kieron Taylor, Anja Thormann, Alessandro Vullo, Steven P Wilder, Amonida Zadissa, Bronwen L Aken, Ewan Birney, Jennifer Harrow, Rhoda Kinsella, Matthieu Muffato, Magali Ruffier, Stephen M J Searle, Giulietta Spudich, Stephen J Trevanion, Andy Yates, Daniel R Zerbino, Paul Flicek
Ensembl 2015. Nucleic acids research 43 (Database issue) (2014)

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Publication Activity (10 Years)

Top Topics

Top Venues

Fiona Cunningham