Irwin Jungreis

ORCID

Publication Activity (10 Years)

Years Active: 2019-2022
Publications (10 Years): 9

Top Venues

Nature biotechnology

Nutrients

Genome research

NAR genomics and bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Jonathan M Mudge, Jorge Ruiz-Orera, John R Prensner, Marie A Brunet, Ferriol Calvet, Irwin Jungreis, Jose Manuel Gonzalez, Michele Magrane, Cholsoon Jang, Jana Felicitas Schulz, Yucheng T Yang, M Mar Albà, Julie L Aspden, Pavel V Baranov, Ariel Alejandro Bazzini, Elspeth A Bruford, Maria Jesus Martin, Lorenzo Calviello, Anne-Ruxandra Carvunis, Jin Chen, Juan Pablo Couso, Eric W Deutsch, Paul Flicek, Adam Frankish, Mark Gerstein, Norbert Hübner, Nicholas T Ingolia, Manolis Kellis, Gerben Menschaert, Robert L Moritz, Uwe Ohler, Xavier Roucou, Alan Saghatelian, Jonathan S Weissman, Sebastiaan van Heesch
Standardized annotation of translated open reading frames. Nature biotechnology 40 (7) (2022)
Adam Frankish, Sílvia Carbonell-Sala, Mark E Diekhans, Irwin Jungreis, Jane E Loveland, Jonathan M Mudge, Cristina Sisu, James C Wright, Carme Arnan, If Barnes, Abhimanyu Banerjee, Ruth Bennett, Andrew Berry, Alexandra Bignell, Carles Boix, Ferriol Calvet, Daniel Cerdán-Vélez, Fiona Cunningham, Claire Davidson, Sarah Donaldson, Cagatay Dursun, Reham Fatima, Stefano Giorgetti, Carlos Garcıa Giron, Jose Manuel Gonzalez, Matthew Hardy, Peter W Harrison, Thibaut Hourlier, Zoe Hollis, Toby Hunt, Benjamin James, Yunzhe Jiang, Rory Johnson, Mike Kay, Julien Lagarde, Fergal J Martin, Laura Martínez Gómez, Surag Nair, Pengyu Ni, Fernando Pozo, Vivek Ramalingam, Magali Ruffier, Bianca M Schmitt, Jacob M Schreiber, Emily Steed, Marie-Marthe Suner, Dulika Sumathipala, Irina Sycheva, Barbara Uszczynska-Ratajczak, Elizabeth Wass, Yucheng T Yang, Andrew D Yates, Zahoor Zafrulla, Jyoti S Choudhary, Mark Gerstein, Roderic Guigo, Tim J P Hubbard, Manolis Kellis, Anshul Kundaje, Benedict Paten, Michael Liam Tress, Paul Flicek
GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic acids research (2022)
Juan Francisco Alcalá-Díaz, Laura Limia-Perez, Ricardo Gómez Huelgas, María Dolores Martín-Escalante, Begoña Cortes-Rodriguez, Jose L Zambrana-Garcia, Marta Entrenas-Castillo, Ana I Perez-Caballero, María-Dolores López-Carmona, Javier Garcia-Alegria, Aquiles Lozano Rodríguez-Mancheño, Maria Del Sol Arenas-de Larriva, Luis M Pérez-Belmonte, Irwin Jungreis, Roger Bouillon, Jose Manual Quesada-Gomez, Jose Lopez-Miranda
Calcifediol Treatment and Hospital Mortality Due to COVID-19: A Cohort Study. Nutrients 13 (6) (2021)
Tamara Ouspenskaia, Travis Law, Karl R Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet, Bo Li, Elena Christian, Binyamin Asher Knisbacher, Phuong M Le, Christina R Hartigan, Hasmik Keshishian, Annie Apffel, Giacomo Oliveira, Wandi Zhang, Sarah Chen, Yuen Ting Chow, Zhe Ji, Irwin Jungreis, Sachet A Shukla, Sune Justesen, Pavan Bachireddy, Manolis Kellis, Gad A Getz, Nir Hacohen, Derin B Keskin, Steven A Carr, Catherine J Wu, Aviv Regev
Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer. Nature biotechnology (2021)
Lucy G Thorne, Mehdi Bouhaddou, Ann-Kathrin Reuschl, Lorena Zuliani-Alvarez, Benjamin J Polacco, Adrian Pelin, Jyoti Batra, Matthew V X Whelan, Myra Hosmillo, Andrea Fossati, Roberta Ragazzini, Irwin Jungreis, Manisha Ummadi, Ajda Rojc, Jane Turner, Marie L Bischof, Kirsten Obernier, Hannes Braberg, Margaret Soucheray, Alicia Richards, Kuei-Ho Chen, Bhavya Harjai, Danish Memon, Joseph Hiatt, Romel Rosales, Briana Lynn McGovern, Aminu S Jahun, Jacqueline M Fabius, Kris M White, Ian G Goodfellow, Yasu Takeuchi, Paola Bonfanti, Kevan M Shokat, Natalia Jura, Kliment A Verba, Mahdad Noursadeghi, Pedro Beltrao, Manolis Kellis, Danielle L Swaney, Adolfo García-Sastre, Clare Jolly, Greg J Towers, Nevan J Krogan
Evolution of enhanced innate immune evasion by SARS-CoV-2. Nature 602 (7897) (2021)
Irwin Jungreis, Rachel Sealfon, Manolis Kellis
SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes. Nature communications 12 (1) (2021)
Maria Kousi, Onuralp Söylemez, Aysegül Ozanturk, Niki Mourtzi, Sebastian Akle, Irwin Jungreis, Jean Muller, Christopher A Cassa, Harrison Brand, Jill Anne Rosenfeld, Maxim Y Wolf, Azita Sadeghpour, Kelsey McFadden, Richard A Lewis, Michael E Talkowski, Hélène Dollfus, Manolis Kellis, Erica E Davis, Shamil R Sunyaev, Nicholas Katsanis
Evidence for secondary-variant genetic burden and non-random distribution across biological modules in a recessive ciliopathy. Nature genetics 52 (11) (2020)
Jonathan M Mudge, Irwin Jungreis, Toby Hunt, Jose Manuel Gonzalez, James C Wright, Mike Kay, Claire Davidson, Stephen Fitzgerald, Ruth Seal, Susan Tweedie, Liang He, Robert M Waterhouse, Yue Li, Elspeth Bruford, Jyoti S Choudhary, Adam Frankish, Manolis Kellis
Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci. Genome research 29 (12) (2019)
Laura Martinez-Gomez, Federico Abascal, Irwin Jungreis, Fernando Pozo, Manolis Kellis, Jonathan M Mudge, Michael L Tress
Few SINEs of life: Alu elements have little evidence for biological relevance despite elevated translation. NAR genomics and bioinformatics 2 (1) (2019)

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Publication Activity (10 Years)

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Irwin Jungreis