Tobias Neumann

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 15

Top Topics

Embryonic Stem Cells

Dna Methylation

Quality Control

Top Venues

Science (New York, N.Y.)

BMC bioinformatics

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Niko Popitsch, Tobias Neumann, Arndt von Haeseler, Stefan L Ameres
Splice_sim: a nucleotide conversion-enabled RNA-seq simulation and evaluation framework. Genome biology 25 (1) (2024)
Niko Popitsch, Tobias Neumann, Arndt von Haeseler, Stefan L Ameres
Splice_sim: a nucleotide conversion-enabled RNA-seq simulation and evaluation framework. Genome biology 25 (1) (2024)
Daniel Malzl, Mihaela Peycheva, Ali Rahjouei, Stefano Gnan, Kyle N Klein, Mariia S Nazarova, Ursula E Schoeberl, David M Gilbert, Sara B C Buonomo, Michela Di Virgilio, Tobias Neumann, Rushad Pavri
RIF1 regulates early replication timing in murine B cells. Nature communications 14 (1) (2023)
Mihaela Peycheva, Tobias Neumann, Daniel Malzl, Mariia S Nazarova, Ursula E Schoeberl, Rushad Pavri
DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations. Science (New York, N.Y.) 377 (6612) (2022)
Lukas Leiendecker, Tobias Neumann, Pauline S Jung, Shona M Cronin, Thomas L Steinacker, Alexander Schleiffer, Michael Schutzbier, Karl Mechtler, Kervarrec Thibault, Estelle Laurent, Kamel Bachiri, Etienne Coyaud, Rajmohan Murali, Klaus J Busam, Babak Itzinger-Monshi, Reinhard Kirnbauer, Lorenzo Cerroni, Eduardo Calonje, Arno Rutten, Frank Stubenrauch, Klaus Georg Griewank, Thomas Wiesner, Anna C Obenauf
Human papillomavirus 42 drives digital papillary adenocarcinoma and elicits a germ-cell like program conserved in HPV-positive cancers. Cancer discovery (2022)
Johannes Schmoellerl, Inês A M Barbosa, Martina Minnich, Florian Andersch, Leonie Smeenk, Marije Havermans, Thomas Eder, Tobias Neumann, Julian Jude, Michaela Fellner, Anja Ebert, Monika Steininger, Ruud Delwel, Florian Grebien, Johannes Zuber
EVI1 drives leukemogenesis through aberrant ERG activation. Blood (2022)
Melanie de Almeida, Matthias Hinterndorfer, Hanna Brunner, Irina Grishkovskaya, Kashish Singh, Alexander Schleiffer, Julian Jude, Sumit Deswal, Robert Kalis, Milica Vunjak, Thomas Lendl, Richard Imre, Elisabeth Roitinger, Tobias Neumann, Susanne Kandolf, Michael Schutzbier, Karl Mechtler, Gijs A Versteeg, David Haselbach, Johannes Zuber
AKIRIN2 controls the nuclear import of proteasomes in vertebrates. Nature 599 (7885) (2021)
Lisa Haas, Anais Elewaut, Camille L Gerard, Christian Umkehrer, Lukas Leiendecker, Malin Pedersen, Izabela Krecioch, David Hoffmann, Maria Novatchkova, Mario Kuttke, Tobias Neumann, Ines Pires da Silva, Harriet Witthock, Michel A Cuendet, Sebastian Carotta, Kevin J Harrington, Johannes Zuber, Richard A Scolyer, Georgina V Long, James S Wilmott, Olivier Michielin, Sakari Vanharanta, Thomas Wiesner, Anna C Obenauf
Acquired resistance to anti-MAPK targeted therapy confers an immune-evasive tumor microenvironment and cross-resistance to immunotherapy in melanoma. Nature cancer 2 (7) (2021)
Christian Umkehrer, Felix Holstein, Laura Formenti, Julian Jude, Kimon Froussios, Tobias Neumann, Shona M Cronin, Lisa Haas, Jesse J Lipp, Thomas Rainer Burkard, Michaela Fellner, Thomas Wiesner, Johannes Zuber, Anna C Obenauf
Isolating live cell clones from barcoded populations using CRISPRa-inducible reporters. Nature biotechnology 39 (2) (2020)
Johanna Fitz, Tobias Neumann, Monika Steininger, Eva-Maria Wiedemann, Adriana Cantoran Garcia, Alexander Athanasiadis, Ursula E Schoeberl, Rushad Pavri
Spt5-mediated enhancer transcription directly couples enhancer activation with physical promoter interaction. Nature genetics 52 (5) (2020)
Lukas Leiendecker, Pauline S Jung, Izabela Krecioch, Tobias Neumann, Alexander Schleiffer, Karl Mechtler, Thomas Wiesner, Anna C Obenauf
LSD1 inhibition induces differentiation and cell death in Merkel cell carcinoma. EMBO molecular medicine 12 (11) (2020)
Georg Michlits, Julian Jude, Matthias Hinterndorfer, Melanie de Almeida, Gintautas Vainorius, Maria Hubmann, Tobias Neumann, Alexander Schleiffer, Thomas Rainer Burkard, Michaela Fellner, Max Gijsbertsen, Anna Traunbauer, Johannes Zuber, Ulrich Elling
Multilayered VBC score predicts sgRNAs that efficiently generate loss-of-function alleles. Nature methods 17 (7) (2020)
Tobias Neumann, Veronika A Herzog, Matthias Muhar, Arndt von Haeseler, Johannes Zuber, Stefan L Ameres, Philipp Rescheneder
Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets. BMC bioinformatics 20 (1) (2019)
Wayo Matsushima, Veronika A Herzog, Tobias Neumann, Katharina Gapp, Johannes Zuber, Stefan L Ameres, Eric Alexander Miska
Sequencing cell-type-specific transcriptomes with SLAM-ITseq. Nature protocols 14 (8) (2019)
Matthias Muhar, Anja Ebert, Tobias Neumann, Christian Umkehrer, Julian Jude, Corinna Wieshofer, Philipp Rescheneder, Jesse J Lipp, Veronika A Herzog, Brian Reichholf, David A Cisneros, Thomas Hoffmann, Moritz F Schlapansky, Pooja Bhat, Arndt von Haeseler, Thomas Köcher, Anna C Obenauf, Johannes Popow, Stefan L Ameres, Johannes Zuber
SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis. Science (New York, N.Y.) 360 (6390) (2018)