Tong Zhang

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 50

Top Topics

Antibiotic Resistance Genes

Polycyclic Aromatic Hydrocarbons

Microbial Community

Wastewater Treatment

Top Venues

Environmental science & technology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Zhiguang Qiu, Li Yuan, Chun-Ang Lian, Bin Lin, Jie Chen, Rong Mu, Xuejiao Qiao, Liyu Zhang, Zheng Xu, Lu Fan, Yunzeng Zhang, Shanquan Wang, Junyi Li, Huiluo Cao, Bing Li, Baowei Chen, Chi Song, Yong-Xin Liu, Lili Shi, Yonghong Tian, Jinren Ni, Tong Zhang, Jizhong Zhou, Wei-Qin Zhuang, Ke Yu
BASALT refines binning from metagenomic data and increases resolution of genome-resolved metagenomic analysis. Nature communications 15 (1) (2024)
Xi Chen, Xiaole Yin, Xianghui Shi, Weifu Yan, Yu Yang, Lei Liu, Tong Zhang
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes. Genome biology 25 (1) (2024)
Yulin Zhang, Yu Deng, Chunxiao Wang, Shuxian Li, Frankie T K Lau, Jizhong Zhou, Tong Zhang
Effects of operational parameters on bacterial communities in Hong Kong and global wastewater treatment plants. mSystems (2024)
Yulin Zhang, Yu Deng, Chunxiao Wang, Shuxian Li, Frankie T K Lau, Jizhong Zhou, Tong Zhang
Effects of operational parameters on bacterial communities in Hong Kong and global wastewater treatment plants. mSystems 9 (3) (2024)
Xi Chen, Xiaole Yin, Xianghui Shi, Weifu Yan, Yu Yang, Lei Liu, Tong Zhang
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes. Genome biology 25 (1) (2024)
Yulin Zhang, Yu Deng, Chunxiao Wang, Shuxian Li, Frankie T K Lau, Jizhong Zhou, Tong Zhang
Effects of operational parameters on bacterial communities in Hong Kong and global wastewater treatment plants. mSystems 9 (3) (2024)
Yulin Zhang, Yu Deng, Chunxiao Wang, Shuxian Li, Frankie T K Lau, Jizhong Zhou, Tong Zhang
Effects of operational parameters on bacterial communities in Hong Kong and global wastewater treatment plants. mSystems 9 (3) (2024)
Zhiguang Qiu, Li Yuan, Chun-Ang Lian, Bin Lin, Jie Chen, Rong Mu, Xuejiao Qiao, Liyu Zhang, Zheng Xu, Lu Fan, Yunzeng Zhang, Shanquan Wang, Junyi Li, Huiluo Cao, Bing Li, Baowei Chen, Chi Song, Yong-Xin Liu, Lili Shi, Yonghong Tian, Jinren Ni, Tong Zhang, Jizhong Zhou, Wei-Qin Zhuang, Ke Yu
BASALT refines binning from metagenomic data and increases resolution of genome-resolved metagenomic analysis. Nature communications 15 (1) (2024)
Zhiguang Qiu, Li Yuan, Chun-Ang Lian, Bin Lin, Jie Chen, Rong Mu, Xuejiao Qiao, Liyu Zhang, Zheng Xu, Lu Fan, Yunzeng Zhang, Shanquan Wang, Junyi Li, Huiluo Cao, Bing Li, Baowei Chen, Chi Song, Yong-Xin Liu, Lili Shi, Yonghong Tian, Jinren Ni, Tong Zhang, Jizhong Zhou, Wei-Qin Zhuang, Ke Yu
BASALT refines binning from metagenomic data and increases resolution of genome-resolved metagenomic analysis. Nature communications 15 (1) (2024)
Emily Garner, Ayella Maile-Moskowitz, Luisa F Angeles, Carl-Fredrik Flach, Diana S Aga, Indumathi Nambi, D G Joakim Larsson, Helmut Bürgmann, Tong Zhang, Peter J Vikesland, Amy J Pruden
Metagenomic Profiling of Internationally Sourced Sewage Influents and Effluents Yields Insight into Selecting Targets for Antibiotic Resistance Monitoring. Environmental science & technology (2024)
Yue Huang, Liguan Li, Xiaole Yin, Tong Zhang
Polycyclic aromatic hydrocarbon (PAH) biodegradation capacity revealed by a genome-function relationship approach. Environmental microbiome 18 (1) (2023)
Liguan Li, Tong Zhang
Roadmap to tackle antibiotic resistance in the environment under the One Health framework. mLife 2 (3) (2023)
Yue Huang, Liguan Li, Xiaole Yin, Tong Zhang
Polycyclic aromatic hydrocarbon (PAH) biodegradation capacity revealed by a genome-function relationship approach. Environmental microbiome 18 (1) (2023)
Yue Huang, Liguan Li, Xiaole Yin, Tong Zhang
Polycyclic aromatic hydrocarbon (PAH) biodegradation capacity revealed by a genome-function relationship approach. Environmental microbiome 18 (1) (2023)
Xiaole Yin, Xi Chen, Xiao-Tao Jiang, Ying Yang, Bing Li, Marcus Ho-Hin Shum, Tommy T Y Lam, Gabriel M Leung, Joan Rose, Concepcion Sanchez-Cid, Timothy M Vogel, Fiona Walsh, Thomas U Berendonk, Janet Midega, Chibuzor Uchea, Dominic Frigon, Gerard D Wright, Carlos Bezuidenhout, Renata C Picão, Shaikh Ziauddin Ahammad, Per Halkjær Nielsen, Philip Hugenholtz, Nicholas J Ashbolt, Gianluca Corno, Despo Fatta-Kassinos, Helmut Bürgmann, Heike Schmitt, Chang-Jun Cha, Amy J Pruden, Kornelia Smalla, Eddie Cytryn, Yu Zhang, Min Yang, Yong-Guan Zhu, Arnaud Dechesne, Barth F Smets, David W Graham, Michael R Gillings, William H Gaze, Célia M Manaia, Mark Cornelis Maria van Loosdrecht, Pedro J J Alvarez, Martin J Blaser, James M Tiedje, Edward Topp, Tong Zhang
Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples. Environmental science & technology (2023)
Liguan Li, Tong Zhang
Roadmap to tackle antibiotic resistance in the environment under the One Health framework. mLife 2 (3) (2023)
Yuhao Fu, Qingyuan Dou, Kornelia Smalla, Yu Wang, Timothy A Johnson, Kristian Koefoed Brandt, Zhi Mei, Maoyuan Liao, Syed A Hashsham, Andreas Schaeffer, Hauke Smidt, Tong Zhang, Hui Li, Robert Stedtfeld, Hongjie Sheng, Benli Chai, Marko P J Virta, Xin Jiang, Fang Wang, Yong-Guan Zhu, James M Tiedje
Gut microbiota research nexus: One Health relationship between human, animal, and environmental resistomes. mLife 2 (4) (2023)
Yuhao Fu, Qingyuan Dou, Kornelia Smalla, Yu Wang, Timothy A Johnson, Kristian Koefoed Brandt, Zhi Mei, Maoyuan Liao, Syed A Hashsham, Andreas Schaeffer, Hauke Smidt, Tong Zhang, Hui Li, Robert Stedtfeld, Hongjie Sheng, Benli Chai, Marko P J Virta, Xin Jiang, Fang Wang, Yong-Guan Zhu, James M Tiedje
Gut microbiota research nexus: One Health relationship between human, animal, and environmental resistomes. mLife 2 (4) (2023)
Dou Wang, Yulin Wang, Lei Liu, Yiqiang Chen, Chunxiao Wang, Yu-You Li, Tong Zhang
Response and resilience of anammox consortia to nutrient starvation. Microbiome 10 (1) (2022)
Maria Virginia Prieto Riquelme, Emily Garner, Suraj Gupta, Jake Metch, Ni Zhu, Matthew F Blair, Gustavo Arango-Argoty, Ayella Maile-Moskowitz, An-Dong Li, Carl-Fredrik Flach, Diana S Aga, Indumathi M Nambi, D G Joakim Larsson, Helmut Bürgmann, Tong Zhang, Amy J Pruden, Peter J Vikesland
Demonstrating a Comprehensive Wastewater-Based Surveillance Approach That Differentiates Globally Sourced Resistomes. Environmental science & technology 56 (21) (2022)
Xiaoqing Xu, Yu Deng, Xiawan Zheng, Shuxian Li, Jiahui Ding, Yu Yang, Hei Yin On, Rong Yang, Ho-Kwong Chui, Chung In Yau, Hein Min Tun, Alex W H Chin, Leo L M Poon, Malik Peiris, Gabriel M Leung, Tong Zhang
Evaluation of RT-qPCR Primer-Probe Sets to Inform Public Health Interventions Based on COVID-19 Sewage Tests. Environmental science & technology 56 (12) (2022)
You Che, Xiaoqing Xu, Yu Yang, Karel Břinda, William Hanage, Chao Yang, Tong Zhang
High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria. Microbiome 10 (1) (2022)
Yue Huang, Zhong Yu, Lei Liu, You Che, Tong Zhang
Acesulfame Anoxic Biodegradation Coupled to Nitrate Reduction by Enriched Consortia and Isolated Shinella spp. Environmental science & technology 56 (18) (2022)
Xue Ning, Jinsong Liang, Yujie Men, Yuhan Wang, Yangyang Chang, Yaohui Bai, Huijuan Liu, Aijie Wang, Tong Zhang, Jiuhui Qu
Siderophores provoke extracellular superoxide production by Arthrobacter strains during carbon sources-level fluctuation. Environmental microbiology 24 (2) (2022)
You Che, Yu Yang, Xiaoqing Xu, Karel Bå Inda, Martin F Polz, William P Hanage, Tong Zhang
Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes. Proceedings of the National Academy of Sciences of the United States of America 118 (6) (2021)
Lei Liu, Yulin Wang, Yu Yang, Depeng Wang, Suk Hang Cheng, Chunmiao Zheng, Tong Zhang
Charting the complexity of the activated sludge microbiome through a hybrid sequencing strategy. Microbiome 9 (1) (2021)
An-Ni Zhang, Jeffry M Gaston, Chengzhen L Dai, Shijie Zhao, Mathilde Poyet, Mathilde Poyet, Xiaole Yin, Li-Guan Li, Mark Cornelis Maria van Loosdrecht, Edward Topp, Michael R Gillings, William P Hanage, James M Tiedje, Katya Moniz, Eric J Alm, Tong Zhang
An omics-based framework for assessing the health risk of antimicrobial resistance genes. Nature communications 12 (1) (2021)
Yulin Wang, Jun Ye, Feng Ju, Lei Liu, Joel A Boyd, Yu Deng, Donovan H Parks, Xiaotao Jiang, Xiaole Yin, Ben J Woodcroft, Gene W Tyson, Philip Hugenholtz, Martin F Polz, Tong Zhang
Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years. Microbiome 9 (1) (2021)
Yiqiang Chen, Yulin Wang, A David Páez-Espino, Martin F Polz, Tong Zhang
Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants. Nature communications 12 (1) (2021)
You Che, Yu Yang, Xiaoqing Xu, Karel Břinda, Martin F Polz, William P Hanage, Tong Zhang
Reply to Shaw: Challenges for enrichment analysis of AMR gene-bearing plasmids. Proceedings of the National Academy of Sciences of the United States of America 118 (21) (2021)
Yu Deng, Yue Huang, You Che, Yu Yang, Xiaole Yin, Aixin Yan, Lei Dai, Yang-Yu Liu, Martin Polz, Tong Zhang
Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants. The ISME journal 15 (10) (2021)
You Che, Yu Yang, Xiaoqing Xu, Karel Břinda, Martin F Polz, William P Hanage, Tong Zhang
Reply to Partridge et al.: Complementary bioinformatics and experimental approaches to investigate the transfer of AMR genes. Proceedings of the National Academy of Sciences of the United States of America 118 (35) (2021)
Yulin Wang, Wei Qin, Xiaotao Jiang, Feng Ju, Yanping Mao, Anni Zhang, David A Stahl, Tong Zhang
Seasonal Prevalence of Ammonia-Oxidizing Archaea in a Full-Scale Municipal Wastewater Treatment Plant Treating Saline Wastewater Revealed by a 6-Year Time-Series Analysis. Environmental science & technology 55 (4) (2021)
Lei Liu, Yulin Wang, You Che, Yiqiang Chen, Yu Xia, Ruibang Luo, Suk Hang Cheng, Chunmiao Zheng, Tong Zhang
High-quality bacterial genomes of a partial-nitritation/anammox system by an iterative hybrid assembly method. Microbiome 8 (1) (2020)
Yulin Wang, Qigui Niu, Xu Zhang, Lei Liu, Yubo Wang, Yiqiang Chen, Mishty Negi, Daniel Figeys, Yu-You Li, Tong Zhang
Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics. Microbiome 7 (1) (2019)
An-Ni Zhang, Yanping Mao, Yubo Wang, Tong Zhang
Mining traits for the enrichment and isolation of not-yet-cultured populations. Microbiome 7 (1) (2019)
You Che, Yu Xia, Lei Liu, An-Dong Li, Yu Yang, Tong Zhang
Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing. Microbiome 7 (1) (2019)
Yu Deng, Yulin Wang, Yanping Mao, Tong Zhang
Partnership of Arthrobacter and Pimelobacter in Aerobic Degradation of Sulfadiazine Revealed by Metagenomics Analysis and Isolation. Environmental science & technology 52 (5) (2018)
An Ni Zhang, Li-Guan Li, Liping Ma, Michael R Gillings, James M Tiedje, Tong Zhang
Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid collection. Microbiome 6 (1) (2018)
Xiao-Tao Jiang, Lin Ye, Feng Ju, Yu-Lin Wang, Tong Zhang
Toward an Intensive Longitudinal Understanding of Activated Sludge Bacterial Assembly and Dynamics. Environmental science & technology 52 (15) (2018)
Li-Guan Li, Xiaole Yin, Tong Zhang
Tracking antibiotic resistance gene pollution from different sources using machine-learning classification. Microbiome 6 (1) (2018)
Hao Yuan, Youchuang Chao, ShanShan Li, Matthew Y H Tang, Yue Huang, You Che, Alice S T Wong, Tong Zhang, Ho-Cheung Shum
Picoinjection-Enabled Multitarget Loop-Mediated Isothermal Amplification for Detection of Foodborne Pathogens. Analytical chemistry 90 (22) (2018)
Yulin Wang, Xiaotao Jiang, Lei Liu, Bing Li, Tong Zhang
High-Resolution Temporal and Spatial Patterns of Virome in Wastewater Treatment Systems. Environmental science & technology 52 (18) (2018)
Wenguang Xiong, Yulin Wang, Yongxue Sun, Liping Ma, Qinglin Zeng, Xiaotao Jiang, Andong Li, Zhenling Zeng, Tong Zhang
Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes. Microbiome 6 (1) (2018)
Yu Deng, Bing Li, Tong Zhang
Bacteria That Make a Meal of Sulfonamide Antibiotics: Blind Spots and Emerging Opportunities. Environmental science & technology 52 (7) (2018)
Peter J Vikesland, Amy Pruden, Pedro J J Alvarez, Diana S Aga, Helmut Bürgmann, Xiang-Dong Li, Celia M Manaia, Indumathi Nambi, Krista Rule Wigginton, Tong Zhang, Yong-Guan Zhu
Toward a Comprehensive Strategy to Mitigate Dissemination of Environmental Sources of Antibiotic Resistance. Environmental science & technology 51 (22) (2017)
Liping Ma, Bing Li, Xiao-Tao Jiang, Yu-Lin Wang, Yu Xia, An-Dong Li, Tong Zhang
Catalogue of antibiotic resistome and host-tracking in drinking water deciphered by a large scale survey. Microbiome 5 (1) (2017)
Feng Ju, Frankie Lau, Tong Zhang
Linking Microbial Community, Environmental Variables, and Methanogenesis in Anaerobic Biogas Digesters of Chemically Enhanced Primary Treatment Sludge. Environmental science & technology 51 (7) (2017)
Liping Ma, An-Dong Li, Xiao-Le Yin, Tong Zhang
The Prevalence of Integrons as the Carrier of Antibiotic Resistance Genes in Natural and Man-Made Environments. Environmental science & technology 51 (10) (2017)
Gang Luo, Bing Li, Li-Guan Li, Tong Zhang, Irini Angelidaki
Antibiotic Resistance Genes and Correlations with Microbial Community and Metal Resistance Genes in Full-Scale Biogas Reactors As Revealed by Metagenomic Analysis. Environmental science & technology 51 (7) (2017)