Volkhard Helms (V Helms)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2022
Publications (10 Years): 30

Top Venues

PloS one

Nature communications

Molecules (Basel, Switzerland)

Scientific reports

Universität des Saarlandes

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Universität des Saarlandes Feb 01 2003

Germany

Professor :: Center for Bioinformatics

Publications

Andreas Denger, Volkhard Helms
Optimized Data Set and Feature Construction for Substrate Prediction of Membrane Transporters. Journal of chemical information and modeling (2022)
Sarah O'Keefe, Pratiti Bhadra, Kwabena B Duah, Guanghui Zong, Levise Tenay, Lauren Andrews, Hayden Schneider, Ashley Anderson, Zhijian Hu, Hazim S Aljewari, Belinda S Hall, Rachel E Simmonds, Volkhard Helms, Stephen High, Wei Q Shi
Synthesis, Biological Evaluation and Docking Studies of Ring-Opened Analogues of Ipomoeassin F. Molecules (Basel, Switzerland) 27 (14) (2022)
Nicolas Künzel, Volkhard Helms
How Peptides Bind to PSD-95/Discs-Large/ZO-1 Domains. Journal of chemical theory and computation 18 (6) (2022)
Mark Sicking, Martina Živná, Pratiti Bhadra, Veronika Barešová, Andrea Tirincsi, Drazena Hadzibeganovic, Kateřina Hodaňová, Petr Vyleťal, Jana Sovová, Ivana Jedličková, Martin Jung, Thomas Bell, Volkhard Helms, Anthony J Bleyer, Stanislav Kmoch, Adolfo Cavalié, Sven Lang
Phenylbutyrate rescues the transport defect of the Sec61α mutations V67G and T185A for renin. Life science alliance 5 (4) (2022)
Andrea Tirincsi, Sarah O'Keefe, Duy Nguyen, Mark Sicking, Johanna Dudek, Friedrich G Förster, Martin Jung, Drazena Hadzibeganovic, Volkhard Helms, Stephen High, Richard Zimmermann, Sven Lang
Proteomics Identifies Substrates and a Novel Component in hSnd2-Dependent ER Protein Targeting. Cells 11 (18) (2022)
Pratiti Bhadra, Lalitha Yadhanapudi, Karin Römisch, Volkhard Helms
How does Sec63 affect the conformation of Sec61 in yeast? PLoS computational biology 17 (3) (2021)
Richard Zimmermann, Sven Lang, Monika Lerner, Friedrich G Förster, Duy Nguyen, Volkhard Helms, Bianca Schrul
Quantitative Proteomics and Differential Protein Abundance Analysis after the Depletion of PEX3 from Human Cells Identifies Additional Aspects of Protein Targeting to the ER. International journal of molecular sciences 22 (23) (2021)
Emanuel G Worst, Marc Finkler, Marc Schenkelberger, Ömer Kurt, Volkhard Helms, Vincent Noireaux, Albrecht Ott
A Methylation-Directed, Synthetic Pap Switch Based on Self-Complementary Regulatory DNA Reconstituted in an All E. coli Cell-Free Expression System. ACS synthetic biology 10 (10) (2021)
Nicolas Künzel, Volkhard Helms
How phosphorylation of peptides affects their interaction with 14-3-3η domains. Proteins (2021)
Pratiti Bhadra, Stefan Schorr, Monika Lerner, Duy Nguyen, Johanna Dudek, Friedrich Förster, Volkhard Helms, Sven Lang, Richard Zimmermann
Quantitative Proteomics and Differential Protein Abundance Analysis after Depletion of Putative mRNA Receptors in the ER Membrane of Human Cells Identifies Novel Aspects of mRNA Targeting to the ER. Molecules (Basel, Switzerland) 26 (12) (2021)
Mona L Knapp, Dalia Alansary, Vanessa Poth, Kathrin Förderer, Frederik Sommer, David Zimmer, Yvonne Schwarz, Nicolas Künzel, Achim Kless, Khaled Machaca, Volkhard Helms, Timo Mühlhaus, Michael Schroda, Annette Lis, Barbara A Niemeyer
A longer isoform of Stim1 is a negative SOCE regulator but increases cAMP-modulated NFAT signaling. EMBO reports 23 (3) (2021)
Pratiti Bhadra, Volkhard Helms
Molecular Modeling of Signal Peptide Recognition by Eukaryotic Sec Complexes. International journal of molecular sciences 22 (19) (2021)
Marie-Christine Klein, Monika Lerner, Duy Nguyen, Stefan Pfeffer, Johanna Dudek, Friedrich Förster, Volkhard Helms, Sven Lang, Richard Zimmermann
TRAM1 protein may support ER protein import by modulating the phospholipid bilayer near the lateral gate of the Sec61-channel. Channels (Austin, Tex.) 14 (1) (2021)
Markus Hollander, David Rasp, Moomal Aziz, Volkhard Helms
ProPores2: Web Service and Stand-Alone Tool for Identifying, Manipulating, and Visualizing Pores in Protein Structures. Journal of chemical information and modeling 61 (4) (2021)
Edoardo Apra, Eric J Bylaska, Wibe A de Jong, Niranjan Govind, Karol Kowalski, T P Straatsma, Marat Valiev, H J J van Dam, Yuri Alexeev, J Anchell, V Anisimov, F W Aquino, R Atta-Fynn, Jochen Autschbach, Nicholas P Bauman, J C Becca, D E Bernholdt, K Bhaskaran-Nair, S Bogatko, P Borowski, J Boschen, J Brabec, A Bruner, E Cauët, Y Chen, Gennady N Chuev, Christopher J Cramer, J Daily, M J O Deegan, Thom H Dunning, Michel Dupuis, K G Dyall, G I Fann, S A Fischer, A Fonari, H Früchtl, Soumen Ghosh, J Garza, N Gawande, Soumen Ghosh, K Glaesemann, Andreas W Götz, Jeff R Hammond, Volkhard Helms, E D Hermes, K Hirao, So Hirata, M Jacquelin, Lasse Jensen, B G Johnson, Hannes Jónsson, R A Kendall, M Klemm, Rika Kobayashi, V Konkov, S Krishnamoorthy, M Krishnan, Z Lin, R D Lins, R J Littlefield, Andrew James Logsdail, Kenneth Lopata, W Ma, A V Marenich, Jorge M Del Campo, Daniel Mejía-Rodríguez, J E Moore, J M Mullin, Takahito Nakajima, D R Nascimento, J A Nichols, P J Nichols, J Nieplocha, A Otero-de-la-Roza, B Palmer, Ajay Panyala, Teerapong Pirojsirikul, Bo Peng, Roberto Peverati, J Pittner, L Pollack, Ryan M Richard, P Sadayappan, George C Schatz, W A Shelton, D W Silverstein, D M A Smith, Thereza A Soares, Duo Song, Marcel Swart, H L Taylor, G S Thomas, V Tipparaju, Donald G Truhlar, K Tsemekhman, T Van Voorhis, Á Vázquez-Mayagoitia, Prakash Verma, O Villa, A Vishnu, K D Vogiatzis, Dunyou Wang, J H Weare, Mark J Williamson, T L Windus, K Woliński, A T Wong, Qin Wu, C Yang, Q Yu, M Zacharias, Zhiyong Zhang, Yan Zhao, R J Harrison
NWChem: Past, present, and future. The Journal of chemical physics 152 (18) (2020)
Yan Zhou, Renping Zhao, Carsten Kummerow, Rahmad Akbar, Mayis Kaba, Varsha Pattu, Volkhard Helms, Heiko Rieger, Paula Nunes-Hasler, Bin Qu
Interorganelle Tethering to Endocytic Organelles Determines Directional Cytokine Transport in CD4+ T Cells. Journal of immunology (Baltimore, Md. : 1950) 205 (11) (2020)
Mazen Ahmad, Volkhard Helms, Olga V Kalinina, Thomas Lengauer
Relative Principal Components Analysis: Application to Analyzing Biomolecular Conformational Changes. Journal of chemical theory and computation 15 (4) (2019)
Maryam Nazarieh, Volkhard Helms
TopControl: A Tool to Prioritize Candidate Disease-associated Genes based on Topological Network Features. Scientific reports 9 (1) (2019)
Maryam Nazarieh, Hema Sekhar Reddy Rajula, Volkhard Helms
Topology Consistency of Disease-specific Differential Co-regulatory Networks. BMC bioinformatics 20 (1) (2019)
Kerstin Neininger, Tobias Marschall, Volkhard Helms
SNP and indel frequencies at transcription start sites and at canonical and alternative translation initiation sites in the human genome. PloS one 14 (4) (2019)
Tarek Kröhler, Sonja M Kessler, Kevan Hosseini, Markus List, Ahmad Barghash, Sonika Patial, Stephan Laggai, Katja Gemperlein, Johannes Haybaeck, Rolf Müller, Volkhard Helms, Marcel H Schulz, Jessica Hoppstädter, Perry J Blackshear, Alexandra K Kiemer
The mRNA-binding Protein TTP/ZFP36 in Hepatocarcinogenesis and Hepatocellular Carcinoma. Cancers 11 (11) (2019)
In-Hyuk Baek, Hyung-Seop Han, Seungyun Baik, Volkhard Helms, Young Jun Kim
Detection of Acidic Pharmaceutical Compounds Using Virus-Based Molecularly Imprinted Polymers. Polymers 10 (9) (2018)
Duy Nguyen, Regine Stutz, Stefan Schorr, Sven Lang, Stefan Pfeffer, Hudson H Freeze, Friedrich Förster, Volkhard Helms, Johanna Dudek, Richard Zimmermann
Proteomics reveals signal peptide features determining the client specificity in human TRAP-dependent ER protein import. Nature communications 9 (1) (2018)
Marie-Christine Klein, Katharina Zimmermann, Stefan Schorr, Martina Landini, Patrick A W Klemens, Jacqueline Altensell, Martin Jung, Elmar Krause, Duy Nguyen, Volkhard Helms, Jens Rettig, Claudia Fecher-Trost, Adolfo Cavalié, Markus Hoth, Ivan Bogeski, H Ekkehard Neuhaus, Richard Zimmermann, Sven Lang, Ilka Haferkamp
AXER is an ATP/ADP exchanger in the membrane of the endoplasmic reticulum. Nature communications 9 (1) (2018)
Rahmad Akbar, Volkhard Helms
ALLO: A tool to discriminate and prioritize allosteric pockets. Chemical biology & drug design 91 (4) (2018)
Jongwoon Kim, Max Fischer, Volkhard Helms
Prediction of Synergistic Toxicity of Binary Mixtures to Vibrio fischeri Based on Biomolecular Interaction Networks. Chemical research in toxicology 31 (11) (2018)
Ulla Ruffing, Abraham Alabi, Theckla Kazimoto, Delfino C Vubil, Ruslan Akulenko, Salim Abdulla, Pedro Alonso, Markus Bischoff, Anja Germann, Martin P Grobusch, Volkhard Helms, Jonas Hoffmann, Winfried V Kern, Peter G Kremsner, Inacio Mandomando, Alexander Mellmann, Georg Peters, Frieder Schaumburg, Sabine Schubert, Lena Strauß, Marcel Tanner, Hagen von Briesen, Laura Wende, Lutz von Müller, Mathias Herrmann
Community-Associated Staphylococcus aureus from Sub-Saharan Africa and Germany: A Cross-Sectional Geographic Correlation Study. Scientific reports 7 (1) (2017)
Siba Shanak, Ozlem Ulucan, Volkhard Helms
Methylation-targeted specificity of the DNA binding proteins R.DpnI and MeCP2 studied by molecular dynamics simulations. Journal of molecular modeling 23 (5) (2017)
Mohamed Hamed, Johannes Trumm, Christian Spaniol, Riccha Sethi, Mohammad R Irhimeh, Georg Fuellen, Martina Paulsen, Volkhard Helms
Linking Hematopoietic Differentiation to Co-Expressed Sets of Pluripotency-Associated and Imprinted Genes and to Regulatory microRNA-Transcription Factor Motifs. PloS one 12 (1) (2017)
Maryam Nazarieh, Andreas Wiese, Thorsten Will, Mohamed Hamed, Volkhard Helms
Identification of key player genes in gene regulatory networks. BMC systems biology 10 (1) (2016)

Volkhard Helms.css-eqlu8i{font-size:small;padding-left:4px;} (V Helms)

Publication Activity (10 Years)

Top Topics

Top Venues

Volkhard Helms (V Helms)