Markus List

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 56

Top Venues

Nucleic acids research

bioRxiv : the preprint server for biology

Journal of fungi (Basel, Switzerland)

Bioinformatics advances

Technical University Munich

University of Southern Denmark (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Technical University Munich Sep 01 2018

Germany

Group Leader :: School of Life Sciences Weihenstephan

Technische Universität München Mar 01 2018 - Aug 31 2018

Germany

Akademischer Rat / PostDoc :: School of Life Sciences Weihenstephan

Max-Planck Institute for Informatics Oct 01 2015 - Feb 28 2018

Germany

Postdoc :: Computational Biology and Applied Algorithmics

University of Southern Denmark Jul 01 2015 - Sep 30 2015

Denmark

Research Assistant :: Molecular Oncology

University of Southern Denmark Dec 01 2011 - Jun 30 2015

Denmark

PhD candidate :: Molecular Oncology

University of Southern Denmark Aug 01 2011 - Dec 01 2011

Denmark

Research Assistant :: Molecular Oncology

osthus GmbH Mar 01 2010 - Aug 31 2010

Germany

Work placement as software developer

careon GmbH Mar 01 2008 - Mar 03 2010

Germany

Software Developer

Education History

University of Southern Denmark Dec 01 2011 - Oct 20 2015

Denmark

PHD :: Molecular Oncology

Eberhard Karls Universitat Tübingen Oct 01 2008 - May 31 2011

Germany

MSC :: Zentrum für Bioinformatik

Eberhard Karls Universitat Tübingen Oct 01 2005 - Sep 01 2008

Germany

BSC :: Zentrum fur Bioinformatik

Publications

Judith Bernett, David B Blumenthal, Markus List
Cracking the black box of deep sequence-based protein-protein interaction prediction. Briefings in bioinformatics 25 (2) (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Judith Bernett, David B Blumenthal, Dominik G Grimm, Florian Haselbeck, Roman Joeres, Olga V Kalinina, Markus List
Guiding questions to avoid data leakage in biological machine learning applications. Nature methods 21 (8) (2024)
Chit Tong Lio, Tolga Düz, Markus Hoffmann, Lina-Liv Willruth, Jan Baumbach, Markus List, Olga Tsoy
Comprehensive benchmark of differential transcript usage analysis for static and dynamic conditions. bioRxiv : the preprint server for biology (2024)
Judith Bernett, David B Blumenthal, Markus List
Cracking the black box of deep sequence-based protein-protein interaction prediction. Briefings in bioinformatics 25 (2) (2024)
Markus Hoffmann, Julian M Poschenrieder, Massimiliano Incudini, Sylvie Baier, Amelie Fritz, Andreas Maier, Michael Hartung, Christian Hoffmann, Nico Trummer, Klaudia Adamowicz, Mario Picciani, Evelyn Scheibling, Maximilian V Harl, Ingmar Lesch, Hunor Frey, Simon Kayser, Paul Wissenberg, Leon Schwartz, Leon Hafner, Aakriti Acharya, Lena Hackl, Gordon Grabert, Sung-Gwon Lee, Gyuhyeok Cho, Matthew E Cloward, Jakub Jankowski, Hye Kyung Lee, Olga Tsoy, Nina Wenke, Anders Gorm Pedersen, Klaus Bønnelykke, Antonio Mandarino, Federico Melograna, Laura Schulz, Héctor Climente-González, Mathias Wilhelm, Luigi Iapichino, Lars Wienbrandt, David Ellinghaus, Kristel Van Steen, Michele Grossi, Priscilla A Furth, Lothar Hennighausen, Alessandra Di Pierro, Jan Baumbach, Tim Kacprowski, Markus List, David B Blumenthal
Network medicine-based epistasis detection in complex diseases: ready for quantum computing. Nucleic acids research (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research 52 (W1) (2024)
Chit Tong Lio, Tolga Düz, Markus Hoffmann, Lina-Liv Willruth, Jan Baumbach, Markus List, Olga Tsoy
Comprehensive benchmark of differential transcript usage analysis for static and dynamic conditions. bioRxiv : the preprint server for biology (2024)
Gihanna Galindez, Markus List, Jan Baumbach, Linus Völker, Ulrike Mäder, David B Blumenthal, Tim Kacprowski
Inference of differential gene regulatory networks using boosted differential trees. Bioinformatics advances 4 (1) (2024)
Gihanna Galindez, Markus List, Jan Baumbach, Linus Völker, Ulrike Mäder, David B Blumenthal, Tim Kacprowski
Inference of differential gene regulatory networks using boosted differential trees. Bioinformatics advances 4 (1) (2024)
Lorenzo Merotto, Gregor Sturm, Alexander Dietrich, Markus List, Francesca Finotello
Making mouse transcriptomics deconvolution accessible with immunedeconv. Bioinformatics advances 4 (1) (2024)
Lorenzo Merotto, Gregor Sturm, Alexander Dietrich, Markus List, Francesca Finotello
Making mouse transcriptomics deconvolution accessible with immunedeconv. Bioinformatics advances 4 (1) (2024)
Judith Bernett, David B Blumenthal, Dominik G Grimm, Florian Haselbeck, Roman Joeres, Olga V Kalinina, Markus List
Guiding questions to avoid data leakage in biological machine learning applications. Nature methods 21 (8) (2024)
Markus Hoffmann, Julian M Poschenrieder, Massimiliano Incudini, Sylvie Baier, Amelie Fritz, Andreas Maier, Michael Hartung, Christian Hoffmann, Nico Trummer, Klaudia Adamowicz, Mario Picciani, Evelyn Scheibling, Maximilian V Harl, Ingmar Lesch, Hunor Frey, Simon Kayser, Paul Wissenberg, Leon Schwartz, Leon Hafner, Aakriti Acharya, Lena Hackl, Gordon Grabert, Sung-Gwon Lee, Gyuhyeok Cho, Matthew E Cloward, Jakub Jankowski, Hye Kyung Lee, Olga Tsoy, Nina Wenke, Anders Gorm Pedersen, Klaus Bønnelykke, Antonio Mandarino, Federico Melograna, Laura Schulz, Héctor Climente-González, Mathias Wilhelm, Luigi Iapichino, Lars Wienbrandt, David Ellinghaus, Kristel Van Steen, Michele Grossi, Priscilla A Furth, Lothar Hennighausen, Alessandra Di Pierro, Jan Baumbach, Tim Kacprowski, Markus List, David B Blumenthal
Network medicine-based epistasis detection in complex diseases: ready for quantum computing. Nucleic acids research (2024)
Chit Tong Lio, Tolga Düz, Markus Hoffmann, Lina-Liv Willruth, Jan Baumbach, Markus List, Olga Tsoy
Comprehensive benchmark of differential transcript usage analysis for static and dynamic conditions. bioRxiv : the preprint server for biology (2024)
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Baider, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez, Mohamed Helmy, Markus Hoffmann, Igor Jurisica, Max Kotlyar, Olga E Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noel Malod-Dognin, Quirin Manz, Julian Matschinske, Miles Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R Pico, Rudolf T Pillich, Julian M Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Saez-Rodriguez, Suryadipto Sarkar, Gideon Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui-Sheng Wang, Olga I Zolotareva, Jan Baumbach
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing. Nucleic acids research (2024)
Chit Tong Lio, Gordon Grabert, Zakaria Louadi, Amit Fenn, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy
Systematic analysis of alternative splicing in time course data using Spycone. Bioinformatics (Oxford, England) 39 (1) (2023)
Markus Hoffmann, Lina-Liv Willruth, Alexander Dietrich, Hye Kyung Lee, Ludwig Knabl, Nico Trummer, Jan Baumbach, Priscilla A Furth, Lothar Hennighausen, Markus List
Blood transcriptomics analysis offers insights into variant-specific immune response to SARS-CoV-2. bioRxiv : the preprint server for biology (2023)
Amit Fenn, Olga Tsoy, Tim Faro, Fanny L M Rößler, Alexander Dietrich, Johannes Kersting, Zakaria Louadi, Chit Tong Lio, Linus Völker, Jan Baumbach, Tim Kacprowski, Markus List
Alternative splicing analysis benchmark with DICAST. NAR genomics and bioinformatics 5 (2) (2023)
Dennis Hecker, Michael Lauber, Fatemeh Behjati Ardakani, Shamim Ashrafiyan, Quirin Manz, Johannes Kersting, Markus Hoffmann, Marcel H Schulz, Markus List
Computational tools for inferring transcription factor activity. Proteomics (2023)
Markus Hoffmann, Leon Schwartz, Octavia-Andreea Ciora, Nico Trummer, Lina-Liv Willruth, Jakub Jankowski, Hye Kyung Lee, Jan Baumbach, Priscilla A Furth, Lothar Hennighausen, Markus List
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging. bioRxiv : the preprint server for biology (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Markus Hoffmann, Leon Schwartz, Octavia-Andreea Ciora, Nico Trummer, Lina-Liv Willruth, Jakub Jankowski, Hye Kyung Lee, Jan Baumbach, Priscilla A Furth, Lothar Hennighausen, Markus List
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging. bioRxiv : the preprint server for biology (2023)
Markus Hoffmann, Leon Schwartz, Octavia-Andreea Ciora, Nico Trummer, Lina-Liv Willruth, Jakub Jankowski, Hye Kyung Lee, Jan Baumbach, Priscilla A Furth, Lothar Hennighausen, Markus List
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging. bioRxiv : the preprint server for biology (2023)
Lena Maria Hackl, Amit Fenn, Zakaria Louadi, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy
Alternative splicing impacts microRNA regulation within coding regions. NAR genomics and bioinformatics 5 (3) (2023)
Chit Tong Lio, Gordon Grabert, Zakaria Louadi, Amit Fenn, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy
Systematic analysis of alternative splicing in time course data using Spycone. Bioinformatics (Oxford, England) 39 (1) (2023)
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski, Hye Kyung Lee, Lina-Liv Willruth, Olga E Lazareva, Kevin Yuan, Nina Baumgarten, Florian Schmidt, Jan Baumbach, Marcel H Schulz, David B Blumenthal, Lothar Hennighausen, Markus List
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors. GigaScience 12 (2023)
Julian Matschinske, Julian Späth, Mohammad Bakhtiari, Niklas Probul, Mohammad Mahdi Kazemi Majdabadi, Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Anne Hartebrodt, Balazs-Attila Orban, Sándor-József Fejér, Olga I Zolotareva, Supratim Das, Linda Baumbach, Josch Konstantin Pauling, Olivera Tomašević, Béla Bihari, Marcus D Bloice, Nina C Donner, Walid Fdhila, Tobias Frisch, Anne-Christin Hauschild, Dominik Heider, Andreas Philipp Hassler, Walter Hötzendorfer, Jan Hospes, Tim Kacprowski, Markus Kastelitz, Markus List, Rudolf Mayer, Mónika Moga, Heimo Müller, Anastasia Pustozerova, Richard Röttger, Christina C Saak, Anna Saranti, Harald H H W Schmidt, Christof Tschohl, Nina Kerstin Wenke, Jan Baumbach
The FeatureCloud Platform for Federated Learning in Biomedicine: Unified Approach. Journal of medical Internet research 25 (2023)
Markus Hoffmann, Leon Schwartz, Octavia-Andreea Ciora, Nico Trummer, Lina-Liv Willruth, Jakub Jankowski, Hye Kyung Lee, Jan Baumbach, Priscilla A Furth, Lothar Hennighausen, Markus List
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging. Bioinformatics advances 3 (1) (2023)
Markus Hoffmann, Julian M Poschenrieder, Massimiliano Incudini, Sylvie Baier, Amelie Fitz, Andreas Maier, Michael Hartung, Christian Hoffmann, Nico Trummer, Klaudia Adamowicz, Mario Picciani, Evelyn Scheibling, Maximilian V Harl, Ingmar Lesch, Hunor Frey, Simon Kayser, Paul Wissenberg, Leon Schwartz, Leon Hafner, Aakriti Acharya, Lena Hackl, Gordon Grabert, Sung-Gwon Lee, Gyuhyeok Cho, Matthew E Cloward, Jakub Jankowski, Hye Kyung Lee, Olga Tsoy, Nina Kerstin Wenke, Anders Gorm Pedersen, Klaus Bønnelykke, Antonio Mandarino, Federico Melograna, Laura Schulz, Héctor Climente-Gonzalez, Mathias Wilhelm, Luigi Iapichino, Lars Wienbrandt, David Ellinghaus, Kristel Van Steen, Michele Grossi, Priscilla A Furth, Lothar Hennighausen, Alessandra Di Pierro, Jan Baumbach, Tim Kacprowski, Markus List, David B Blumenthal
Network medicine-based epistasis detection in complex diseases: ready for quantum computing. medRxiv : the preprint server for health sciences (2023)
Manuela Lautizi, Jan Baumbach, Wilko Weichert, Katja Steiger, Markus List, Nicole Pfarr, Tim Kacprowski
The limits of molecular signatures for pancreatic ductal adenocarcinoma subtyping. NAR cancer 4 (4) (2022)
Michael Hartung, Elisa Anastasi, Zeinab M Mamdouh, Cristian Nogales, Harald H H W Schmidt, Jan Baumbach, Olga I Zolotareva, Markus List
Cancer driver drug interaction explorer. Nucleic acids research (2022)
Hans Carlo Maurer, David Schult, Plamena Koyumdzhieva, Sandra Reitmeier, Moritz Middelhoff, Sebastian Rasch, Markus List, Klaus-Peter Janssen, Katja Steiger, Ulrike Protzer, Roland M Schmid, Klaus Neuhaus, Dirk Haller, Michael Quante, Tobias Lahmer
Gut Microbial Disruption in Critically Ill Patients with COVID-19-Associated Pulmonary Aspergillosis. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Hans Carlo Maurer, David Schult, Plamena Koyumdzhieva, Sandra Reitmeier, Moritz Middelhoff, Sebastian Rasch, Markus List, Klaus-Peter Janssen, Katja Steiger, Ulrike Protzer, Roland M Schmid, Klaus Neuhaus, Dirk Haller, Michael Quante, Tobias Lahmer
Gut Microbial Disruption in Critically Ill Patients with COVID-19-Associated Pulmonary Aspergillosis. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Hans Carlo Maurer, David Schult, Plamena Koyumdzhieva, Sandra Reitmeier, Moritz Middelhoff, Sebastian Rasch, Markus List, Klaus-Peter Janssen, Katja Steiger, Ulrike Protzer, Roland M Schmid, Klaus Neuhaus, Dirk Haller, Michael Quante, Tobias Lahmer
Gut Microbial Disruption in Critically Ill Patients with COVID-19-Associated Pulmonary Aspergillosis. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Hans Carlo Maurer, David Schult, Plamena Koyumdzhieva, Sandra Reitmeier, Moritz Middelhoff, Sebastian Rasch, Markus List, Klaus-Peter Janssen, Katja Steiger, Ulrike Protzer, Roland M Schmid, Klaus Neuhaus, Dirk Haller, Michael Quante, Tobias Lahmer
Gut Microbial Disruption in Critically Ill Patients with COVID-19-Associated Pulmonary Aspergillosis. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Hans Carlo Maurer, David Schult, Plamena Koyumdzhieva, Sandra Reitmeier, Moritz Middelhoff, Sebastian Rasch, Markus List, Klaus-Peter Janssen, Katja Steiger, Ulrike Protzer, Roland M Schmid, Klaus Neuhaus, Dirk Haller, Michael Quante, Tobias Lahmer
Gut Microbial Disruption in Critically Ill Patients with COVID-19-Associated Pulmonary Aspergillosis. Journal of fungi (Basel, Switzerland) 8 (12) (2022)
Melissa Klug, Kilian Kirmes, Jiaying Han, Olga E Lazareva, Marc Rosenbaum, Giacomo Viggiani, Moritz von Scheidt, Juergen Ruland, Jan Baumbach, Gianluigi Condorelli, Karl-Ludwig Laugwitz, Markus List, Isabell Bernlochner, Dario Bongiovanni
Mass cytometry of platelet-rich plasma: a new approach to analyze platelet surface expression and reactivity. Platelets 33 (6) (2021)
Isabel Abellan-Schneyder, Monica S Matchado, Sandra Reitmeier, Alina Sommer, Zeno Sewald, Jan Baumbach, Markus List, Klaus Neuhaus
Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing. mSphere 6 (1) (2021)
Gregor Sturm, Markus List, Jitao David Zhang
Tissue heterogeneity is prevalent in gene expression studies. NAR genomics and bioinformatics 3 (3) (2021)
Michael Scherer, Florian Schmidt, Olga Lazareva, Jörn Walter, Jan Baumbach, Marcel H Schulz, Markus List
Machine learning for deciphering cell heterogeneity and gene regulation. Nature computational science 1 (3) (2021)
Julian Matschinske, Nicolas Alcaraz, Arriel Benis, Martin Golebiewski, Dominik G Grimm, Lukas Heumos, Tim Kacprowski, Olga Lazareva, Markus List, Zakaria Louadi, Josch K Pauling, Nico Pfeifer, Richard Röttger, Veit Schwämmle, Gregor Sturm, Alberto Traverso, Kristel Van Steen, Martiela Vaz de Freitas, Gerda Cristal Villalba Silva, Leonard Wee, Nina Kerstin Wenke, Massimiliano Zanin, Olga I Zolotareva, Jan Baumbach, David B Blumenthal
The AIMe registry for artificial intelligence in biomedical research. Nature methods 18 (10) (2021)
Olga E Lazareva, Jan Baumbach, Markus List, David B Blumenthal
On the limits of active module identification. Briefings in bioinformatics 22 (5) (2021)
David B Blumenthal, Jan Baumbach, Markus Hoffmann, Tim Kacprowski, Markus List
A framework for modeling epistatic interaction. Bioinformatics (Oxford, England) 37 (12) (2021)
Michael Scherer, Florian Schmidt, Olga Lazareva, Jörn Walter, Jan Baumbach, Marcel H Schulz, Markus List
Machine learning for deciphering cell heterogeneity and gene regulation. Nature computational science 1 (3) (2021)
Markus Hoffmann, Elisabeth Pachl, Michael Hartung, Veronika Stiegler, Jan Baumbach, Marcel H Schulz, Markus List
SPONGEdb: a pan-cancer resource for competing endogenous RNA interactions. NAR cancer 3 (1) (2021)
Sepideh Sadegh, Julian Matschinske, David B Blumenthal, Gihanna Galindez, Tim Kacprowski, Markus List, Reza Nasirigerdeh, Mhaned Oubounyt, Andreas Pichlmair, Tim Daniel Rose, Marisol Salgado-Albarrán, Julian Späth, Alexey Stukalov, Nina K Wenke, Kevin Yuan, Josch K Pauling, Jan Baumbach
Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing. Nature communications 11 (1) (2020)
Ines Block, Carolin Müller, Daniel Sdogati, Henriette Pedersen, Markus List, Aleksandra M Jaskot, Silje Damkjær Syse, Pernille Lund Hansen, Steffen Schmidt, Helle Christiansen, Cinzia Casella, Sidsel Bering Olsen, Monica M Blomstrøm, Angela Riedel, Mads Thomassen, Torben A Kruse, Søren W Karlskov Hansen, Petra Kioschis, Jan Mollenhauer
CFP suppresses breast cancer cell growth by TES-mediated upregulation of the transcription factor DDIT3. Oncogene 38 (23) (2019)
Tarek Kröhler, Sonja M Kessler, Kevan Hosseini, Markus List, Ahmad Barghash, Sonika Patial, Stephan Laggai, Katja Gemperlein, Johannes Haybaeck, Rolf Müller, Volkhard Helms, Marcel H Schulz, Jessica Hoppstädter, Perry J Blackshear, Alexandra K Kiemer
The mRNA-binding Protein TTP/ZFP36 in Hepatocarcinogenesis and Hepatocellular Carcinoma. Cancers 11 (11) (2019)
Markus List, Peter Ebert, Felipe Albrecht
Ten Simple Rules for Developing Usable Software in Computational Biology. PLoS computational biology 13 (1) (2017)
Richa Batra, Nicolas Alcaraz, Kevin Gitzhofer, Josch Pauling, Henrik Jørn Ditzel, Marc Hellmuth, Jan Baumbach, Markus List
On the performance of de novo pathway enrichment. NPJ systems biology and applications 3 (2017)
Felipe Albrecht, Markus List, Christoph Bock, Thomas Lengauer
DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets. Nucleic acids research 44 (W1) (2016)
Markus List, Steffen Schmidt, Helle Christiansen, Marc Rehmsmeier, Qihua Tan, Jan Mollenhauer, Jan Baumbach
Comprehensive analysis of high-throughput screens with HiTSeekR. Nucleic acids research 44 (14) (2016)
Markus List, Nicolas Alcaraz, Martin Dissing-Hansen, Henrik J Ditzel, Jan Mollenhauer, Jan Baumbach
KeyPathwayMinerWeb: online multi-omics network enrichment. Nucleic acids research 44 (W1) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Markus List