Wei Chen

Pitt ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 29

Top Topics

Idiopathic Pulmonary Fibrosis

Dna Methylation

Allergic Rhinitis

Top Venues

Nature communications

American journal of respiratory cell and molecular biology

The European respiratory journal

Annals of the American Thoracic Society

This page only lists publications with an associated author ORCID identifier.

Publications

Haoran Hu, Xinjun Wang, Site Feng, Zhongli Xu, Jing Liu, Elisa Heidrich-O'Hare, Yanshuo Chen, Molin Yue, Lang Zeng, Ziqi Rong, Tianmeng Chen, Timothy R Billiar, Ying Ding, Heng Huang, Richard H Duerr, Wei Chen
A unified model-based framework for doublet or multiplet detection in single-cell multiomics data. Nature communications 15 (1) (2024)
Sheng Yang, Kristina Gaietto, Wei Chen
Mapping a New Course to Understand Lung Biology Mechanisms: LungMAP.net. American journal of respiratory cell and molecular biology 70 (2) (2024)
Haoran Hu, Xinjun Wang, Site Feng, Zhongli Xu, Jing Liu, Elisa Heidrich-O'Hare, Yanshuo Chen, Molin Yue, Lang Zeng, Ziqi Rong, Tianmeng Chen, Timothy R Billiar, Ying Ding, Heng Huang, Richard H Duerr, Wei Chen
A unified model-based framework for doublet or multiplet detection in single-cell multiomics data. Nature communications 15 (1) (2024)
Molin Yue, Daniel J Weiner, Kristina M Gaietto, Franziska J Rosser, Christopher M Qoyawayma, Michelle L Manni, Michael M Myerburg, Joseph M Pilewski, Juan C Celedón, Wei Chen, Erick Forno
Nasal Epithelium Transcriptomics Predict Clinical Response to Elexacaftor/Tezacaftor/Ivacaftor. American journal of respiratory cell and molecular biology (2024)
Franziska J Rosser, Molin Yue, Yueh-Ying Han, Erick Forno, Christopher Qoyawayma, Michelle L Manni, Edna Acosta-Pérez, Glorisa Canino, Wei Chen, Juan C Celedón
Long-Term PM 2.5 Exposure and Upregulation of CLCA1 Expression in Nasal Epithelium from Youth with Asthma. Annals of the American Thoracic Society (2024)
Haoran Hu, Xinjun Wang, Site Feng, Zhongli Xu, Jing Liu, Elisa Heidrich-O'Hare, Yanshuo Chen, Molin Yue, Lang Zeng, Ziqi Rong, Tianmeng Chen, Timothy R Billiar, Ying Ding, Heng Huang, Richard H Duerr, Wei Chen
A unified model-based framework for doublet or multiplet detection in single-cell multiomics data. Nature communications 15 (1) (2024)
Molin Yue, Daniel J Weiner, Kristina M Gaietto, Franziska J Rosser, Christopher M Qoyawayma, Michelle L Manni, Michael M Myerburg, Joseph M Pilewski, Juan C Celedón, Wei Chen, Erick Forno
Nasal Epithelium Transcriptomics Predict Clinical Response to Elexacaftor/Tezacaftor/Ivacaftor. American journal of respiratory cell and molecular biology (2024)
Sheng Yang, Kristina Gaietto, Wei Chen
Mapping a New Course to Understand Lung Biology Mechanisms: LungMAP.net. American journal of respiratory cell and molecular biology 70 (2) (2024)
Yueh-Ying Han, Wei Chen, Erick Forno, Juan C Celedón
Adverse Events during Adulthood, Child Maltreatment, and Asthma among British Adults in The UK Biobank. Annals of the American Thoracic Society (2023)
Sheng Yang, Kristina Gaietto, Wei Chen
Mapping a New Course to Understand Lung Biology Mechanisms: LungMAP.net. American journal of respiratory cell and molecular biology (2023)
Yueh-Ying Han, Qi Yan, Wei Chen, Juan C Celedón
Child maltreatment, anxiety and depression, and asthma among British adults in the UK Biobank. The European respiratory journal 60 (4) (2022)
Alireza Ganjdanesh, Jipeng Zhang, Emily Y Chew, Ying Ding, Heng Huang, Wei Chen
LONGL-Net: temporal correlation structure guided deep learning model to predict longitudinal age-related macular degeneration severity. PNAS nexus 1 (1) (2022)
Xinjun Wang, Zhongli Xu, Haoran Hu, Xueping Zhou, Yanfu Zhang, Robert A Lafyatis, Kong Chen, Heng Huang, Ying Ding, Richard H Duerr, Wei Chen
SECANT: a biology-guided semi-supervised method for clustering, classification, and annotation of single-cell multi-omics. PNAS nexus 1 (4) (2022)
Alireza Ganjdanesh, Jipeng Zhang, Sarah Yan, Wei Chen, Heng Huang
Multimodal Genotype and Phenotype Data Integration to Improve Partial Data-Based Longitudinal Prediction. Journal of computational biology : a journal of computational molecular cell biology (2022)
Merlijn van Breugel, Cancan Qi, Zhongli Xu, Casper-Emil Tingskov Pedersen, Ilya Petoukhov, Judith E Vonk, Ulrike Gehring, Marijn Berg, Marnix Bügel, Orestes A Carpaij, Erick Forno, Andreanne Morin, Anders U Eliasen, Yale Jiang, Maarten van den Berge, Martijn C Nawijn, Yang Li, Wei Chen, Louis J Bont, Klaus Bønnelykke, Juan C Celedón, Gerard H Koppelmann, Cheng-Jian Xu
Nasal DNA methylation at three CpG sites predicts childhood allergic disease. Nature communications 13 (1) (2022)
Manqi Cai, Molin Yue, Tianmeng Chen, Jinling Liu, Erick Forno, Xinghua Lu, Timothy Billiar, Juan C Celedón, Chris McKennan, Wei Chen, Jiebiao Wang
Robust and accurate estimation of cellular fraction from tissue omics data via ensemble deconvolution. Bioinformatics (Oxford, England) 38 (11) (2022)
Ellyse M Cipolla, Molin Yue, Kara L Nickolich, Brydie R Huckestein, Danielle Antos, Wei Chen, John F Alcorn
Heterotypic Influenza Infections Mitigate Susceptibility to Secondary Bacterial Infection. Journal of immunology (Baltimore, Md. : 1950) 209 (4) (2022)
Tracy Tabib, Mengqi Huang, Nina Morse, Anna Papazoglou, Rithika Behera, Minxue Jia, Melissa Bulik, Daisy E Monier, Panayiotis V Benos, Wei Chen, Robyn Domsic, Robert A Lafyatis
Myofibroblast transcriptome indicates SFRP2hi fibroblast progenitors in systemic sclerosis skin. Nature communications 12 (1) (2021)
Qi Yan, Erick Forno, Esther Herrera-Luis, Maria Pino-Yanes, Cancan Qi, Raimon Rios, Yueh-Ying Han, Soyeon Kim, Sam Oh, Edna Acosta-Pérez, Rong Zhang, Donglei Hu, Celeste Eng, Scott Huntsman, Lydiana Avila, Nadia Boutaoui, Michelle M Cloutier, Manuel E Soto-Quiros, Cheng-Jian Xu, Scott T Weiss, Jessica Lasky-Su, Megan R Kiedrowski, Camila Figueiredo, Jennifer Bomberger, Mauricio L Barreto, Glorisa Canino, Wei Chen, Gerard H Koppelmann, Esteban G Burchard, Juan C Celedón
A genome-wide association study of severe asthma exacerbations in Latino children and adolescents. The European respiratory journal 57 (4) (2021)
Hehua Dai, Peixiang Lan, Daqiang Zhao, Khodor I Abou-Daya, Wentao Liu, Wenhao Chen, Andrew J Friday, Amanda L Williams, Tao Sun, Jianjiao Chen, Wei Chen, Steven Mortin-Toth, Jayne S Danska, Chris Wiebe, Peter Nickerson, Tengfang Li, Lisa R Mathews, Heth R Turnquist, Matthew L Nicotra, Sebastien Gingras, Eiji Takayama, Hiromi Kubagawa, Mark J Shlomchik, Martin H Oberbarnscheidt, Xian Chang Li, Fadi G Lakkis
PIRs mediate innate myeloid cell memory to nonself MHC molecules. Science (New York, N.Y.) 368 (6495) (2020)
Ge Yang, Yueh-Ying Han, Tao Sun, Ling Li, Franziska Rosser, Erick Forno, Sanjay R Patel, Wei Chen, Juan C Celedón
Sleep Duration, Current Asthma, and Lung Function in a Nationwide Study of U.S. Adults. American journal of respiratory and critical care medicine 200 (7) (2020)
Soyeon Kim, Erick Forno, Qi Yan, Yale Jiang, Rong Zhang, Nadia Boutaoui, Edna Acosta-Pérez, Glorisa Canino, Wei Chen, Juan C Celedón
SNPs identified by GWAS affect asthma risk through DNA methylation and expression of cis-genes in airway epithelium. The European respiratory journal 55 (4) (2020)
Yale Jiang, Olena Gruzieva, Ting Wang, Erick Forno, Nadia Boutaoui, Tao Sun, Simon K Merid, Edna Acosta-Pérez, Inger Kull, Glorisa Canino, Josep M Antó, Jean Bousquet, Erik Melén, Wei Chen, Juan C Celedón
Transcriptomics of atopy and atopic asthma in white blood cells from children and adolescents. The European respiratory journal 53 (5) (2019)
Christina Morse, Tracy Tabib, John Sembrat, Kristina L Buschur, Humberto Trejo Bittar, Eleanor Valenzi, Yale Jiang, Daniel J Kass, Kevin Gibson, Wei Chen, Ana Mora, Panayiotis V Benos, Mauricio Rojas, Robert A Lafyatis
Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis. The European respiratory journal 54 (2) (2019)
Zhe Sun, Li Chen, Hongyi Xin, Yale Jiang, Qianhui Huang, Anthony R Cillo, Tracy Tabib, Jay K Kolls, Tullia C Bruno, Robert Lafyatis, Dario A A Vignali, Kong Chen, Ying Ding, Ming Hu, Wei Chen
A Bayesian mixture model for clustering droplet-based single-cell transcriptomic data from population studies. Nature communications 10 (1) (2019)
Deepali V Sawant, Hiroshi Yano, Maria Chikina, Qianxia Zhang, Mengting Liao, Chang Liu, Derrick J Callahan, Zhe Sun, Tao Sun, Tracy Tabib, Arjun Pennathur, David B Corry, James D Luketich, Robert Lafyatis, Wei Chen, Amanda C Poholek, Tullia C Bruno, Creg J Workman, Dario A A Vignali
Adaptive plasticity of IL-10+ and IL-35+ Treg cells cooperatively promotes tumor T cell exhaustion. Nature immunology 20 (6) (2019)
Kristy Boggs, Ting Wang, Abrahim I Orabi, Amitava Mukherjee, John F Eisses, Tao Sun, Li Wen, Tanveer A Javed, Farzad Esni, Wei Chen, Sohail Z Husain
Pancreatic gene expression during recovery after pancreatitis reveals unique transcriptome profiles. Scientific reports 8 (1) (2018)
Rong Zhang, Zhao Ren, Wei Chen
SILGGM: An extensive R package for efficient statistical inference in large-scale gene networks. PLoS computational biology 14 (8) (2018)
Daniel Hui, Zhou Fang, Jerome Lin, Qing Duan, Yun Li, Ming Hu, Wei Chen
LAIT: a local ancestry inference toolkit. BMC genetics 18 (1) (2017)