Ming Hu

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 44

Top Venues

Nature

Nature immunology

Journal of personalized medicine

Communications biology

Cleveland Clinic

University of Michigan (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Cleveland Clinic Aug 01 2016

United States

Assistant Staff :: Quantitative Health Sciences

New York University School of Medicine Aug 01 2013 - Jul 31 2016

United States

Assistant Professor :: Population Health

Harvard University Aug 01 2010 - Jul 31 2013

United States

Postdoctoral Research Fellow :: Statistics

Education History

University of Michigan Aug 01 2006 - Jul 31 2010

United States

PHD :: Biostatistics

Publications

Sari Yordi, Yavuz Cakir, Patrick W Commiskey, Hasan Cetin, Ming Hu, Joseph Abraham, Jamie Reese, Sunil K Srivastava, Justis P Ehlers
Ellipsoid Zone Integrity and Visual Function in Dry Age-Related Macular Degeneration. Journal of personalized medicine 14 (5) (2024)
Hongyu Yu, Daiqing Wu, Shreya Mishra, Guning Shen, Huaigu Sun, Ming Hu, Yun Li
SnapFISH-IMPUTE: an imputation method for multiplexed DNA FISH data. Communications biology 7 (1) (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature 627 (8002) (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature 627 (8002) (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature 627 (8002) (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature (2024)
Weifang Liu, Wujuan Zhong, Paola Giusti-Rodríguez, Zhiyun Jiang, Geoffery W Wang, Huaigu Sun, Ming Hu, Yun Li
SnapHiC-G: identifying long-range enhancer-promoter interactions from single-cell Hi-C data via a global background model. Briefings in bioinformatics 25 (5) (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature 627 (8002) (2024)
Hongyu Yu, Daiqing Wu, Shreya Mishra, Guning Shen, Huaigu Sun, Ming Hu, Yun Li
SnapFISH-IMPUTE: an imputation method for multiplexed DNA FISH data. Communications biology 7 (1) (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature 627 (8002) (2024)
Sari Yordi, Yavuz Cakir, Patrick W Commiskey, Hasan Cetin, Ming Hu, Joseph Abraham, Jamie Reese, Sunil K Srivastava, Justis P Ehlers
Ellipsoid Zone Integrity and Visual Function in Dry Age-Related Macular Degeneration. Journal of personalized medicine 14 (5) (2024)
Hongyu Yu, Daiqing Wu, Shreya Mishra, Guning Shen, Huaigu Sun, Ming Hu, Yun Li
SnapFISH-IMPUTE: an imputation method for multiplexed DNA FISH data. Communications biology 7 (1) (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature 627 (8002) (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature 627 (8002) (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature (2024)
Hongyu Yu, Daiqing Wu, Shreya Mishra, Guning Shen, Huaigu Sun, Ming Hu, Yun Li
SnapFISH-IMPUTE: an imputation method for multiplexed DNA FISH data. Communications biology 7 (1) (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature 627 (8002) (2024)
Indumathi Patta, Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu, Arpita Prusty, Sara McArdle, Zbigniew Mikulski, Huan-You Wang, Christine S Cheng, Kathleen M Fisch, Ming Hu, Cornelis Murre
Nuclear morphology is shaped by loop-extrusion programs. Nature 627 (8002) (2024)
Weifang Liu, Wujuan Zhong, Paola Giusti-Rodríguez, Zhiyun Jiang, Geoffery W Wang, Huaigu Sun, Ming Hu, Yun Li
SnapHiC-G: identifying long-range enhancer-promoter interactions from single-cell Hi-C data via a global background model. Briefings in bioinformatics 25 (5) (2024)
E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis Murre
Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens. Nature immunology 24 (2) (2023)
E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis Murre
Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens. Nature immunology 24 (2) (2023)
E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis Murre
Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens. Nature immunology 24 (2) (2023)
Lindsay Lee, Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu, Ziyin Chen, Shreya Mishra, Bing Ren, Yun Li, Ming Hu
SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data. Briefings in bioinformatics (2023)
Lindsay Lee, Hongyu Yu, Bojing Blair Jia, Adam Jussila, Chenxu Zhu, Jiawen Chen, Liangqi Xie, Antonina Hafner, Shreya Mishra, Duan Dennis Wang, Caterina Strambio-De-Castilla, Alistair Boettiger, Bing Ren, Yun Li, Ming Hu
SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data. Nature communications 14 (1) (2023)
E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis Murre
Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens. Nature immunology (2023)
E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis Murre
Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens. Nature immunology 24 (2) (2023)
Caishang Zheng, Yanjun Wei, Peng Zhang, Kangyu Lin, Dandan He, Hongqi Teng, Ganiraju Manyam, Zhao Zhang, Wen Liu, Hye Rin Lindsay Lee, Ximing Tang, Wei He, Nelufa Islam, Antrix Jain, Yulun Chiu, Shaolong Cao, Yarui Diao, Sherita Meyer-Gauen, Magnus Höök, Anna Malovannaya, Wenbo Li, Ming Hu, Wenyi Wang, Han Xu, Scott Kopetz, Yiwen Chen
CRISPR-Cas9-based functional interrogation of unconventional translatome reveals human cancer dependency on cryptic non-canonical open reading frames. Nature structural & molecular biology (2023)
Bryce Rowland, Ruth Huh, Zoey Hou, Cheynna A Crowley, Jia Wen, Yin Shen, Ming Hu, Paola Giusti-Rodriguez, Patrick F Sullivan, Yun Li
THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data. PLoS genetics 18 (3) (2022)
Athéna R Ypsilanti, Kartik Pattabiraman, Rinaldo Catta-Preta, Olga Golonzhka, Susan Lindtner, Ke Tang, Ian R Jones, Armen Abnousi, Ivan Juric, Ming Hu, Yin Shen, Diane E Dickel, Axel Visel, Len A Pennachio, Michael Hawrylycz, Carol L Thompson, Hongkui Zeng, Iros Barozzi, Alexander S Nord, John L R Rubenstein
Transcriptional network orchestrating regional patterning of cortical progenitors. Proceedings of the National Academy of Sciences of the United States of America 118 (51) (2022)
Jia Wen, Taylor M Lagler, Quan Sun, Yuchen Yang, Jiawen Chen, Yuriko Harigaya, Vijay G Sankaran, Ming Hu, Alexander P Reiner, Laura M Raffield, Yun Li
Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types. PLoS genetics 18 (1) (2022)
Weifang Liu, Wujuan Zhong, Jiawen Chen, Bo Huang, Ming Hu, Yun Li
Understanding Regulatory Mechanisms of Brain Function and Disease through 3D Genome Organization. Genes 13 (4) (2022)
Le Huang, Yuchen Yang, Gang Li, Minzhi Jiang, Jia Wen, Armen Abnousi, Jonathan D Rosen, Ming Hu, Yun Li
A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data. Briefings in bioinformatics 23 (3) (2022)
Alice C Jiang, Duriye Damla Sevgi, Christopher Mugnaini, Jon Whitney, Sunil K Srivastava, Katherine E Talcott, Ming Hu, Jamie L Reese, Justis P Ehlers
Predictive Assessment of Quantitative Ultra-Widefield Angiographic Features for Future Need for Anti-VEGF Therapy in Diabetic Eye Disease. Journal of personalized medicine 12 (4) (2022)
Amy S Babiuch, Charles C Wykoff, Sari Yordi, Hannah Yu, Sunil K Srivastava, Ming Hu, Thuy K Le, Leina Lunasco, Jamie Reese, Muneeswar G Nittala, SriniVas R Sadda, Justis P Ehlers
The 2-Year Leakage Index and Quantitative Microaneurysm Results of the RECOVERY Study: Quantitative Ultra-Widefield Findings in Proliferative Diabetic Retinopathy Treated with Intravitreal Aflibercept. Journal of personalized medicine 11 (11) (2021)
Hui Huang, Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern, Mattia Conte, Yanxiao Zhang, Simona Bianco, Andrea Maria Chiariello, Miao Yu, Rong Hu, Melodi Tastemel, Ivan Juric, Ming Hu, Mario Nicodemi, Xiaowei Zhuang, Bing Ren
CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains. Nature genetics 53 (7) (2021)
Xingjie Ren, Mengchi Wang, Bingkun Li, Kirsty Jamieson, Lina Zheng, Ian R Jones, Bin Li, Maya Asami Takagi, Jerry Lee, Lenka Maliskova, Tsz Wai Tam, Miao Yu, Rong Hu, Lindsay Lee, Armen Abnousi, Gang Li, Yun Li, Ming Hu, Bing Ren, Wei Wang, Yin Shen
Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath. Science advances 7 (38) (2021)
Miao Yu, Armen Abnousi, Yanxiao Zhang, Guoqiang Li, Lindsay Lee, Ziyin Chen, Rongxin Fang, Taylor M Lagler, Yuchen Yang, Jia Wen, Quan Sun, Yun Li, Bing Ren, Ming Hu
SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data. Nature methods 18 (9) (2021)
Jonathan D Rosen, Yuchen Yang, Armen Abnousi, Jiawen Chen, Michael Song, Ian R Jones, Yin Shen, Ming Hu, Yun Li
HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq Datasets. Current issues in molecular biology 43 (2) (2021)
Michael Song, Mark-Phillip Lee Pebworth, Xiaoyu Yang, Armen Abnousi, Changxu Fan, Jia Wen, Jonathan D Rosen, Mayank N K Choudhary, Xiekui Cui, Ian R Jones, Seth Bergenholtz, Ugomma C Eze, Ivan Juric, Bingkun Li, Lenka Maliskova, Jerry Lee, Weifang Liu, Alex A Pollen, Yun Li, Ting Wang, Ming Hu, Arnold R Kriegstein, Yin Shen
Cell-type-specific 3D epigenomes in the developing human cortex. Nature 587 (7835) (2020)
Ivan Juric, Miao Yu, Armen Abnousi, Ramya Raviram, Rongxin Fang, Yuan Zhao, Yanxiao Zhang, Yunjiang Qiu, Yuchen Yang, Yun Li, Bing Ren, Ming Hu
MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments. PLoS computational biology 15 (4) (2019)
Mingfeng Li, Gabriel Santpere Baró, Yuka Imamura Kawasawa, Oleg V Evgrafov, Forrest O Gulden, Sirisha Pochareddy, Susan M Sunkin, Zhen Li, Yurae Shin, Ying Zhu, André M M Sousa, Donna M Werling, Robert R Kitchen, Hyo Jung Kang, Mihovil Pletikos, Jinmyung Choi, Sydney Muchnik, Xuming Xu, Daifeng Wang, Belen Lorente-Galdos, Shuang Liu, Paola Giusti-Rodríguez, Hyejung Won, Christiaan A de Leeuw, Antonio F Pardinas, null null, null null, null null, Ming Hu, Fulai Jin, Yun Li, Michael J Owen, Michael C O'Donovan, James T R Walters, Danielle Posthuma, Mark A Reimers, Pat Levitt, Daniel R Weinberger, Thomas M Hyde, Joel E Kleinman, Daniel H Geschwind, Michael J Hawrylycz, Matthew W State, Stephan J Sanders, Patrick F Sullivan, Mark B Gerstein, Ed S Lein, James A Knowles, Nenad Sestan
Integrative functional genomic analysis of human brain development and neuropsychiatric risks. Science (New York, N.Y.) 362 (6420) (2019)
Zhe Sun, Li Chen, Hongyi Xin, Yale Jiang, Qianhui Huang, Anthony R Cillo, Tracy Tabib, Jay K Kolls, Tullia C Bruno, Robert Lafyatis, Dario A A Vignali, Kong Chen, Ying Ding, Ming Hu, Wei Chen
A Bayesian mixture model for clustering droplet-based single-cell transcriptomic data from population studies. Nature communications 10 (1) (2019)
Yan Zhang, Lin An, Jie Xu, Bo Zhang, W Jim Zheng, Ming Hu, Jijun Tang, Feng Yue
Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus. Nature communications 9 (1) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ming Hu