Xiaoqian Jiang

ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 49

Top Venues

Journal of the American Medical Informatics Association : JAMIA

JMIR medical informatics

NPJ digital medicine

Nature communications

University of Texas Health Science Center at Houston

Carnegie Mellon University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Texas Health Science Center at Houston May 01 2018

United States

Associate Professor :: School of Biomedical Informatics

University of California San Diego - Apr 30 2018

United States

Associate Professor :: Medicine

University of California San Diego

United States

postdoc :: Division of Biomedical Informatics

Education History

Carnegie Mellon University Sep 01 2006

United States

PHD :: School of Computer Science

Publications

Tianhao Li, Sandesh Shetty, Advaith Kamath, Ajay Jaiswal, Xiaoqian Jiang, Ying Ding, Yejin Kim
CancerGPT for few shot drug pair synergy prediction using large pretrained language models. NPJ digital medicine 7 (1) (2024)
Tianhao Li, Sandesh Shetty, Advaith Kamath, Ajay Jaiswal, Xiaoqian Jiang, Ying Ding, Yejin Kim
CancerGPT for few shot drug pair synergy prediction using large pretrained language models. NPJ digital medicine 7 (1) (2024)
Shaika Chowdhury, Yongbin Chen, Pengyang Li, Sivaraman Rajaganapathy, Andrew Wen, Xiao Ma, Qiying Dai, Yue Yu, Sunyang Fu, Xiaoqian Jiang, Zhe He, Sunghwan Sohn, Xiaoke Liu, Suzette J Bielinski, Alanna M Chamberlain, James R Cerhan, Nansu Zong
Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction. Journal of the American Medical Informatics Association : JAMIA 31 (8) (2024)
Yan Hu, Qingyu Chen, Jingcheng Du, Xueqing Peng, Vipina Kuttichi Keloth, Xu Zuo, Yujia Zhou, Zehan Li, Xiaoqian Jiang, Zhiyong Lu, Kirk Roberts, Hua Xu
Improving large language models for clinical named entity recognition via prompt engineering. Journal of the American Medical Informatics Association : JAMIA (2024)
Zhao Li, Qiang Wei, Liang-Chin Huang, Jianfu Li, Yan Hu, Yao-Shun Chuang, Jianping He, Avisha Das, Vipina Kuttichi Keloth, Yuntao Yang, Chiamaka S Diala, Kirk E Roberts, Cui Tao, Xiaoqian Jiang, Wenjin Jim Zheng, Hua Xu
Ensemble pretrained language models to extract biomedical knowledge from literature. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Yan Hu, Qingyu Chen, Jingcheng Du, Xueqing Peng, Vipina Kuttichi Keloth, Xu Zuo, Yujia Zhou, Zehan Li, Xiaoqian Jiang, Zhiyong Lu, Kirk Roberts, Hua Xu
Improving large language models for clinical named entity recognition via prompt engineering. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Shaika Chowdhury, Yongbin Chen, Pengyang Li, Sivaraman Rajaganapathy, Andrew Wen, Xiao Ma, Qiying Dai, Yue Yu, Sunyang Fu, Xiaoqian Jiang, Zhe He, Sunghwan Sohn, Xiaoke Liu, Suzette J Bielinski, Alanna M Chamberlain, James R Cerhan, Nansu Zong
Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction. Journal of the American Medical Informatics Association : JAMIA (2024)
Shaika Chowdhury, Yongbin Chen, Pengyang Li, Sivaraman Rajaganapathy, Andrew Wen, Xiao Ma, Qiying Dai, Yue Yu, Sunyang Fu, Xiaoqian Jiang, Zhe He, Sunghwan Sohn, Xiaoke Liu, Suzette J Bielinski, Alanna M Chamberlain, James R Cerhan, Nansu Zong
Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction. Journal of the American Medical Informatics Association : JAMIA 31 (8) (2024)
Zhao Li, Qiang Wei, Liang-Chin Huang, Jianfu Li, Yan Hu, Yao-Shun Chuang, Jianping He, Avisha Das, Vipina Kuttichi Keloth, Yuntao Yang, Chiamaka S Diala, Kirk E Roberts, Cui Tao, Xiaoqian Jiang, Wenjin Jim Zheng, Hua Xu
Ensemble pretrained language models to extract biomedical knowledge from literature. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Tianhao Li, Sandesh Shetty, Advaith Kamath, Ajay Jaiswal, Xiaoqian Jiang, Ying Ding, Yejin Kim
CancerGPT for few shot drug pair synergy prediction using large pretrained language models. NPJ digital medicine 7 (1) (2024)
Shaika Chowdhury, Yongbin Chen, Pengyang Li, Sivaraman Rajaganapathy, Andrew Wen, Xiao Ma, Qiying Dai, Yue Yu, Sunyang Fu, Xiaoqian Jiang, Zhe He, Sunghwan Sohn, Xiaoke Liu, Suzette J Bielinski, Alanna M Chamberlain, James R Cerhan, Nansu Zong
Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction. Journal of the American Medical Informatics Association : JAMIA 31 (8) (2024)
Tianhao Li, Sandesh Shetty, Advaith Kamath, Ajay Jaiswal, Xiaoqian Jiang, Ying Ding, Yejin Kim
CancerGPT for few shot drug pair synergy prediction using large pretrained language models. NPJ digital medicine 7 (1) (2024)
Shaika Chowdhury, Yongbin Chen, Pengyang Li, Sivaraman Rajaganapathy, Andrew Wen, Xiao Ma, Qiying Dai, Yue Yu, Sunyang Fu, Xiaoqian Jiang, Zhe He, Sunghwan Sohn, Xiaoke Liu, Suzette J Bielinski, Alanna M Chamberlain, James R Cerhan, Nansu Zong
Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction. Journal of the American Medical Informatics Association : JAMIA (2024)
Yan Hu, Qingyu Chen, Jingcheng Du, Xueqing Peng, Vipina Kuttichi Keloth, Xu Zuo, Yujia Zhou, Zehan Li, Xiaoqian Jiang, Zhiyong Lu, Kirk Roberts, Hua Xu
Improving large language models for clinical named entity recognition via prompt engineering. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Yan Hu, Qingyu Chen, Jingcheng Du, Xueqing Peng, Vipina Kuttichi Keloth, Xu Zuo, Yujia Zhou, Zehan Li, Xiaoqian Jiang, Zhiyong Lu, Kirk Roberts, Hua Xu
Improving large language models for clinical named entity recognition via prompt engineering. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Zhao Li, Qiang Wei, Liang-Chin Huang, Jianfu Li, Yan Hu, Yao-Shun Chuang, Jianping He, Avisha Das, Vipina Kuttichi Keloth, Yuntao Yang, Chiamaka S Diala, Kirk E Roberts, Cui Tao, Xiaoqian Jiang, Wenjin Jim Zheng, Hua Xu
Ensemble pretrained language models to extract biomedical knowledge from literature. Journal of the American Medical Informatics Association : JAMIA (2024)
Zhao Li, Qiang Wei, Liang-Chin Huang, Jianfu Li, Yan Hu, Yao-Shun Chuang, Jianping He, Avisha Das, Vipina Kuttichi Keloth, Yuntao Yang, Chiamaka S Diala, Kirk E Roberts, Cui Tao, Xiaoqian Jiang, Wenjin Jim Zheng, Hua Xu
Ensemble pretrained language models to extract biomedical knowledge from literature. Journal of the American Medical Informatics Association : JAMIA 31 (9) (2024)
Yifang Dang, Fang Li, Xinyue Hu, Vipina K Keloth, Meng Zhang, Sunyang Fu, Muhammad Tuan Amith, J Wilfred Fan, Jingcheng Du, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao
Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO). Journal of the American Medical Informatics Association : JAMIA (2023)
Pulakesh Upadhyaya, Kai Zhang, Can Li, Xiaoqian Jiang, Yejin Kim
Scalable Causal Structure Learning: Scoping Review of Traditional and Deep Learning Algorithms and New Opportunities in Biomedicine. JMIR medical informatics 11 (2023)
Leonard Dervishi, Wenbiao Li, Anisa Halimi, Xiaoqian Jiang, Jaideep Vaidya, Erman Ayday
Privacy preserving identification of population stratification for collaborative genomic research. Bioinformatics (Oxford, England) 39 (39 Suppl 1) (2023)
Pulakesh Upadhyaya, Kai Zhang, Can Li, Xiaoqian Jiang, Yejin Kim
Scalable Causal Structure Learning: Scoping Review of Traditional and Deep Learning Algorithms and New Opportunities in Biomedicine. JMIR medical informatics 11 (2023)
Pulakesh Upadhyaya, Kai Zhang, Can Li, Xiaoqian Jiang, Yejin Kim
Scalable Causal Structure Learning: Scoping Review of Traditional and Deep Learning Algorithms and New Opportunities in Biomedicine. JMIR medical informatics 11 (2023)
Avram S Bukhbinder, Yaobin Ling, Kristofer Harris, Xiaoqian Jiang, Paul E Schulz
Do vaccinations influence the development of Alzheimer disease? Human vaccines & immunotherapeutics (2023)
Pulakesh Upadhyaya, Kai Zhang, Can Li, Xiaoqian Jiang, Yejin Kim
Scalable Causal Structure Learning: Scoping Review of Traditional and Deep Learning Algorithms and New Opportunities in Biomedicine. JMIR medical informatics 11 (2023)
Zhao Li, Rongbin Li, Yujia Zhou, Laila Rasmy, Degui Zhi, Ping Zhu, Antonio Dono, Xiaoqian Jiang, Hua Xu, Yoshua Esquenazi, Wenjin Jim Zheng
Prediction of Brain Metastases Development in Patients With Lung Cancer by Explainable Artificial Intelligence From Electronic Health Records. JCO clinical cancer informatics 7 (2023)
Kritib Bhattarai, Sivaraman Rajaganapathy, Trisha Das, Yejin Kim, Yongbin Chen, null null, null null, Qiying Dai, Xiaoyang Li, Xiaoqian Jiang, Nansu Zong
Using artificial intelligence to learn optimal regimen plan for Alzheimer's disease. Journal of the American Medical Informatics Association : JAMIA (2023)
Uan-I Chen, Hua Xu, Trudy Millard Krause, Raymond Greenberg, Xiao Dong, Xiaoqian Jiang
Factors Associated With COVID-19 Death in the United States: Cohort Study. JMIR public health and surveillance 8 (5) (2022)
Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, XiaoFeng Wang, Arif Harmanci, Miran Kim, Kai Post, Diyue Bu, Tyler Bath, Jihoon Kim, Weijie Liu, Hongbo Chen, Lucila Ohno-Machado
The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition. Journal of the American Medical Informatics Association : JAMIA 29 (12) (2022)
Yulin Dai, Hui Yu, Qiheng Yan, Bingrui Li, Andi Liu, Wendao Liu, Xiaoqian Jiang, Yejin Kim, Yan Guo, Zhong-Ming Zhao
Drug-Target Network Study Reveals the Core Target-Protein Interactions of Various COVID-19 Treatments. Genes 13 (7) (2022)
Yan Ding, Xiaoqian Jiang, Yejin Kim
Relational graph convolutional networks for predicting blood-brain barrier penetration of drug molecules. Bioinformatics (Oxford, England) 38 (10) (2022)
Miran Kim, Xiaoqian Jiang, Kristin Lauter, Elkhan Ismayilzada, Shayan Shams
Secure human action recognition by encrypted neural network inference. Nature communications 13 (1) (2022)
Zihao Yuan, Yuntao Yang, Ningyan Zhang, Claudio Soto, Xiaoqian Jiang, Zhiqiang An, Wenjin Jim Zheng
Human Endogenous Retroviruses in Glioblastoma Multiforme. Microorganisms 9 (4) (2021)
Katie J Hogan, Briana Macedo, Venkata Macha, Arko Barman, Xiaoqian Jiang
Contact Tracing Apps: Lessons Learned on Privacy, Autonomy, and the Need for Detailed and Thoughtful Implementation. JMIR medical informatics 9 (7) (2021)
Jingcheng Du, Qing Wang, Jingqi Wang, Prerana Ramesh, Yang Xiang, Xiaoqian Jiang, Cui Tao
COVID-19 trial graph: a linked graph for COVID-19 clinical trials. Journal of the American Medical Informatics Association : JAMIA 28 (9) (2021)
Jihoon Kim, Larissa Neumann, Paulina Paul, Michele E Day, Michael Aratow, Douglas S Bell, Jason N Doctor, Ludwig Christian Hinske, Xiaoqian Jiang, Katherine K Kim, Michael E Matheny, Daniella Meeker, Mark J Pletcher, Lisa M Schilling, Spencer SooHoo, Hua Xu, Kai Zheng, Lucila Ohno-Machado, null null
Privacy-protecting, reliable response data discovery using COVID-19 patient observations. Journal of the American Medical Informatics Association : JAMIA 28 (8) (2021)
Jianfu Li, Yujia Zhou, Xiaoqian Jiang, Karthik Natarajan, Serguei Vs Pakhomov, Hongfang Liu, Hua Xu
Are synthetic clinical notes useful for real natural language processing tasks: A case study on clinical entity recognition. Journal of the American Medical Informatics Association : JAMIA 28 (10) (2021)
Zhengyi Li, Xiangyu Du, Xiaojing Liao, Xiaoqian Jiang, Tiffany Champagne-Langabeer
Demystifying the Dark Web Opioid Trade: Content Analysis on Anonymous Market Listings and Forum Posts. Journal of medical Internet research 23 (2) (2021)
José S Enriquez, Yan Chu, Shivanand Pudakalakatti, Kang Lin Hsieh, Duncan Salmon, Prasanta Dutta, Niki Zacharias Millward, Eugene Lurie, Steven W Millward, Florencia McAllister, Anirban Maitra, Subrata Sen, Ann Killary, Jian Zhang, Xiaoqian Jiang, Pratip K Bhattacharya, Shayan Shams
Hyperpolarized Magnetic Resonance and Artificial Intelligence: Frontiers of Imaging in Pancreatic Cancer. JMIR medical informatics 9 (6) (2021)
Amalio Telenti, Xiaoqian Jiang
Treating medical data as a durable asset. Nature genetics 52 (10) (2020)
Changgee Chang, Yi Deng, Xiaoqian Jiang, Qi Long
Multiple imputation for analysis of incomplete data in distributed health data networks. Nature communications 11 (1) (2020)
Shan Jiang, Daizhan Zhou, Yin-Ying Wang, Peilin Jia, Chunling Wan, Xingwang Li, Guang He, Dongmei Cao, Xiaoqian Jiang, Kenneth S Kendler, Ming T Tsuang, Travis Mize, Jain-Shing Wu, Yimei Lu, Lin He, Jingchun Chen, Zhong-Ming Zhao, Xiangning Chen
Retraction Note: Identification of de novo mutations in prenatal neurodevelopment-associated genes in schizophrenia in two Han Chinese patient-sibling family-based cohorts. Translational psychiatry 10 (1) (2020)
Shan Jiang, Daizhan Zhou, Yin-Ying Wang, Peilin Jia, Chunling Wan, Xingwang Li, Guang He, Dongmei Cao, Xiaoqian Jiang, Kenneth S Kendler, Ming T Tsuang, Travis Mize, Jain-Shing Wu, Yimei Lu, Lin He, Jingchun Chen, Zhong-Ming Zhao, Xiangning Chen
Identification of de novo mutations in prenatal neurodevelopment-associated genes in schizophrenia in two Han Chinese patient-sibling family-based cohorts. Translational psychiatry 10 (1) (2020)
Yingxiang Huang, Junghye Lee, Shuang Wang, Jimeng Sun, Hongfang Liu, Xiaoqian Jiang
Privacy-Preserving Predictive Modeling: Harmonization of Contextual Embeddings From Different Sources. JMIR medical informatics 6 (2) (2018)
Junghye Lee, Jimeng Sun, Fei Wang, Shuang Wang, Chi-Hyuck Jun, Xiaoqian Jiang
Privacy-Preserving Patient Similarity Learning in a Federated Environment: Development and Analysis. JMIR medical informatics 6 (2) (2018)
Miran Kim, Yongsoo Song, Shuang Wang, Yuhou Xia, Xiaoqian Jiang
Secure Logistic Regression Based on Homomorphic Encryption: Design and Evaluation. JMIR medical informatics 6 (2) (2018)
Md Nazmus Sadat, Xiaoqian Jiang, Md Momin Al Aziz, Shuang Wang, Noman Mohammed
Secure and Efficient Regression Analysis Using a Hybrid Cryptographic Framework: Development and Evaluation. JMIR medical informatics 6 (1) (2018)
Haixu Tang, Xiaoqian Jiang, Xiaofeng Wang, Shuang Wang, Heidi Sofia, Dov Fox, Kristin Lauter, Bradley Malin, Amalio Telenti, Li Xiong, Lucila Ohno-Machado
Protecting genomic data analytics in the cloud: state of the art and opportunities. BMC medical genomics 9 (1) (2016)
Jina Huh-Yoo, Rebecca Marmor, Xiaoqian Jiang
Lessons Learned for Online Health Community Moderator Roles: A Mixed-Methods Study of Moderators Resigning From WebMD Communities. Journal of medical Internet research 18 (9) (2016)
Wael Farhan, Zhimu Wang, Yingxiang Huang, Shuang Wang, Fei Wang, Xiaoqian Jiang
A Predictive Model for Medical Events Based on Contextual Embedding of Temporal Sequences. JMIR medical informatics 4 (4) (2016)
Haoran Li, Li Xiong, Lucila Ohno-Machado, Xiaoqian Jiang
Privacy preserving RBF kernel support vector machine. BioMed research international 2014 (2014)

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Publication Activity (10 Years)

Top Topics

Top Venues

Xiaoqian Jiang