Xing-Ming Zhao (Xingming Zhao, Zhao Xing-Ming)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 34

Top Topics

Gene Expression

Induced Pluripotent Stem Cells

Top Venues

Nature communications

Nucleic acids research

This page only lists publications with an associated author ORCID identifier.

Publications

Yanqi Dong, Wei-Hua Chen, Xing-Ming Zhao
VirRep: a hybrid language representation learning framework for identifying viruses from human gut metagenomes. Genome biology 25 (1) (2024)
Yiqian Duan, Santos-Júnior Célio Dias, Thomas Sebastian Benedikt Schmidt, Anthony Fullam, Breno L S de Almeida, Chengkai Zhu, Michael Kuhn, Xing-Ming Zhao, Peer Bork, Luis Pedro Coelho
A catalog of small proteins from the global microbiome. Nature communications 15 (1) (2024)
Yanqi Dong, Wei-Hua Chen, Xing-Ming Zhao
VirRep: a hybrid language representation learning framework for identifying viruses from human gut metagenomes. Genome biology 25 (1) (2024)
Senying Lai, Huarui Wang, Peer Bork, Wei-Hua Chen, Xing-Ming Zhao
Long-read sequencing reveals extensive gut phageome structural variations driven by genetic exchange with bacterial hosts. Science advances 10 (33) (2024)
Yanqi Dong, Wei-Hua Chen, Xing-Ming Zhao
VirRep: a hybrid language representation learning framework for identifying viruses from human gut metagenomes. Genome biology 25 (1) (2024)
Senying Lai, Huarui Wang, Peer Bork, Wei-Hua Chen, Xing-Ming Zhao
Long-read sequencing reveals extensive gut phageome structural variations driven by genetic exchange with bacterial hosts. Science advances 10 (33) (2024)
Shuqian Zhang, Liting Song, Bo Yuan, Cheng Zhang, Jixin Cao, Jinlong Chen, Jiayi Qiu, Yilin Tai, Jingqi Chen, Zi-Long Qiu, Xing-Ming Zhao, Tian-Lin Cheng
TadA reprogramming to generate potent miniature base editors with high precision. Nature communications 14 (1) (2023)
Yucheng T Yang, Ziquan Gan, Jinglong Zhang, Xingzhong Zhao, Yifan Yang, Shuwen Han, Wei Wu, Xing-Ming Zhao
STAB2: an updated spatio-temporal cell atlas of the human and mouse brain. Nucleic acids research (2023)
Shuqian Zhang, Bo Yuan, Jixin Cao, Liting Song, Jinlong Chen, Jiayi Qiu, Zi-Long Qiu, Xing-Ming Zhao, Jingqi Chen, Tian-Lin Cheng
TadA orthologs enable both cytosine and adenine editing of base editors. Nature communications 14 (1) (2023)
Anyi Yang, Yucheng T Yang, Xing-Ming Zhao
An augmented Mendelian randomization approach provides causality of brain imaging features on complex traits in a single biobank-scale dataset. PLoS genetics 19 (12) (2023)
Shuqian Zhang, Liting Song, Bo Yuan, Cheng Zhang, Jixin Cao, Jinlong Chen, Jiayi Qiu, Yilin Tai, Jingqi Chen, Zi-Long Qiu, Xing-Ming Zhao, Tian-Lin Cheng
TadA reprogramming to generate potent miniature base editors with high precision. Nature communications 14 (1) (2023)
Xingzhong Zhao, Liting Song, Anyi Yang, Zichao Zhang, Jinglong Zhang, Yucheng T Yang, Xing-Ming Zhao
Prioritizing genes associated with brain disorders by leveraging enhancer-promoter interactions in diverse neural cells and tissues. Genome medicine 15 (1) (2023)
Santos-Júnior Célio Dias, Marcelo Der Torossian Torres, Yiqian Duan, Rodríguez Del Río Álvaro, Thomas Sebastian Benedikt Schmidt, Chong Hui, Anthony Fullam, Michael Kuhn, Zhu Chengkai, Houseman Amy, Somborski Jelena, Vines Anna, Xing-Ming Zhao, Peer Bork, Huerta-Cepas Jaime, de la Fuente-Nunez Cesar, Luis Pedro Coelho
Computational exploration of the global microbiome for antibiotic discovery. bioRxiv : the preprint server for biology (2023)
Shuqian Zhang, Bo Yuan, Jixin Cao, Liting Song, Jinlong Chen, Jiayi Qiu, Zi-Long Qiu, Xing-Ming Zhao, Jingqi Chen, Tian-Lin Cheng
TadA orthologs enable both cytosine and adenine editing of base editors. Nature communications 14 (1) (2023)
Shaojun Pan, Xing-Ming Zhao, Luis Pedro Coelho
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing. Bioinformatics (Oxford, England) 39 (39 Suppl 1) (2023)
Anyi Yang, Yucheng T Yang, Xing-Ming Zhao
An augmented Mendelian randomization approach provides causality of brain imaging features on complex traits in a single biobank-scale dataset. PLoS genetics 19 (12) (2023)
Shuqian Zhang, Bo Yuan, Jixin Cao, Liting Song, Jinlong Chen, Jiayi Qiu, Zi-Long Qiu, Xing-Ming Zhao, Jingqi Chen, Tian-Lin Cheng
TadA orthologs enable both cytosine and adenine editing of base editors. Nature communications 14 (1) (2023)
Yang Gao, Xiaofei Yang, Hao Chen, Xinjiang Tan, Zhaoqing Yang, Lian Deng, Baonan Wang, Shuang Kong, Songyang Li, Yuhang Cui, Chang Lei, Yimin Wang, Yuwen Pan, Sen Ma, Hao Sun, Xiaohan Zhao, Yingbing Shi, Ziyi Yang, Dongdong Wu, Shaoyuan Wu, Xing-Ming Zhao, Binyin Shi, Li Jin, Zhi-Bin Hu, null null, Yan Lu, Jiayou Chu, Kai Ye, Shuhua Xu
A pangenome reference of 36 Chinese populations. Nature (2023)
Shuqian Zhang, Bo Yuan, Jixin Cao, Liting Song, Jinlong Chen, Jiayi Qiu, Zi-Long Qiu, Xing-Ming Zhao, Jingqi Chen, Tian-Lin Cheng
TadA orthologs enable both cytosine and adenine editing of base editors. Nature communications 14 (1) (2023)
Shuqian Zhang, Liting Song, Bo Yuan, Cheng Zhang, Jixin Cao, Jinlong Chen, Jiayi Qiu, Yilin Tai, Jingqi Chen, Zi-Long Qiu, Xing-Ming Zhao, Tian-Lin Cheng
TadA reprogramming to generate potent miniature base editors with high precision. Nature communications 14 (1) (2023)
Shuqian Zhang, Liting Song, Bo Yuan, Cheng Zhang, Jixin Cao, Jinlong Chen, Jiayi Qiu, Yilin Tai, Jingqi Chen, Zi-Long Qiu, Xing-Ming Zhao, Tian-Lin Cheng
TadA reprogramming to generate potent miniature base editors with high precision. Nature communications 14 (1) (2023)
Shuqian Zhang, Liting Song, Bo Yuan, Cheng Zhang, Jixin Cao, Jinlong Chen, Jiayi Qiu, Yilin Tai, Jingqi Chen, Zi-Long Qiu, Xing-Ming Zhao, Tian-Lin Cheng
TadA reprogramming to generate potent miniature base editors with high precision. Nature communications 14 (1) (2023)
Anyi Yang, Yucheng T Yang, Xing-Ming Zhao
An augmented Mendelian randomization approach provides causality of brain imaging features on complex traits in a single biobank-scale dataset. PLoS genetics 19 (12) (2023)
Shuqian Zhang, Bo Yuan, Jixin Cao, Liting Song, Jinlong Chen, Jiayi Qiu, Zi-Long Qiu, Xing-Ming Zhao, Jingqi Chen, Tian-Lin Cheng
TadA orthologs enable both cytosine and adenine editing of base editors. Nature communications 14 (1) (2023)
Bo Yuan, Shuqian Zhang, Liting Song, Jinlong Chen, Jixin Cao, Jiayi Qiu, Zilong Qiu, Jingqi Chen, Xing-Ming Zhao, Tian-Lin Cheng
Engineering of cytosine base editors with DNA damage minimization and editing scope diversification. Nucleic acids research (2023)
Anyi Yang, Yucheng T Yang, Xing-Ming Zhao
An augmented Mendelian randomization approach provides causality of brain imaging features on complex traits in a single biobank-scale dataset. PLoS genetics 19 (12) (2023)
Nayang Shan, Yao Lu, Hao Guo, Dongyu Li, Jitong Jiang, Linlin Yan, Jiudong Gao, Yong Ren, Xing-Ming Zhao, Lin Hou
CITEdb: a manually curated database of cell-cell interactions in human. Bioinformatics (Oxford, England) 38 (22) (2022)
Senying Lai, Shaojun Pan, Chuqing Sun, Luis Pedro Coelho, Wei-Hua Chen, Xing-Ming Zhao
metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies. Genome biology 23 (1) (2022)
Jingqi Chen, Liting Song, Anyi Yang, Guiying Dong, Xing-Ming Zhao
Disrupted long-range gene regulations elucidate shared tissue-specific mechanisms of neuropsychiatric disorders. Molecular psychiatry 27 (6) (2022)
Shaojun Pan, Chengkai Zhu, Xing-Ming Zhao, Luis Pedro Coelho
A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments. Nature communications 13 (1) (2022)
Guiying Dong, Jianfeng Feng, Fengzhu Sun, Jingqi Chen, Xing-Ming Zhao
A global overview of genetically interpretable multimorbidities among common diseases in the UK Biobank. Genome medicine 13 (1) (2021)
Hanbo Jin, Guoru Hu, Chuqing Sun, Yiqian Duan, Zhenmo Zhang, Zhi Liu, Xing-Ming Zhao, Wei-Hua Chen
mBodyMap: a curated database for microbes across human body and their associations with health and diseases. Nucleic acids research (2021)
Die Dai, Jiaying Zhu, Chuqing Sun, Min Li, Jinxin Liu, Sicheng Wu, Kang Ning, Li-Jie He, Xing-Ming Zhao, Wei-Hua Chen
GMrepo v2: a curated human gut microbiome database with special focus on disease markers and cross-dataset comparison. Nucleic acids research (2021)
Santos-Júnior Célio Dias, Shaojun Pan, Xing-Ming Zhao, Luis Pedro Coelho
Macrel: antimicrobial peptide screening in genomes and metagenomes. PeerJ 8 (2020)