Luis Pedro Coelho (Luis P Coelho, Coelho Luis Pedro)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 28

Top Venues

Proteomics

Nature ecology & evolution

PLoS computational biology

Nature communications

Fudan University

Carnegie Mellon University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Fudan University Sep 01 2018

China

Young PI :: ISTBI

European Molecular Biology Laboratory Apr 01 2013 - Aug 31 2018

Germany

Postdoctoral researcher :: Structural and Computational Biology (Bork group)

Education History

Carnegie Mellon University Sep 01 2006 - Sep 30 2011

United States

PHD :: Computational Biology

Publications

Luis Pedro Coelho
For long-term sustainable software in bioinformatics. PLoS computational biology 20 (3) (2024)
Marija Dmitrijeva, Janko Tackmann, Joao Frederico Matias Rodrigues, Jaime Huerta-Cepas, Luis Pedro Coelho, Christian von Mering
A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer. Nature ecology & evolution 8 (5) (2024)
Luis Pedro Coelho, Santos-Júnior Célio Dias, de la Fuente-Nunez Cesar
Challenges in computational discovery of bioactive peptides in 'omics data. Proteomics 24 (12-13) (2024)
Marija Dmitrijeva, Janko Tackmann, Joao Frederico Matias Rodrigues, Jaime Huerta-Cepas, Luis Pedro Coelho, Christian von Mering
A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer. Nature ecology & evolution 8 (5) (2024)
Luis Pedro Coelho
For long-term sustainable software in bioinformatics. PLoS computational biology 20 (3) (2024)
Luis Pedro Coelho, Santos-Júnior Célio Dias, de la Fuente-Nunez Cesar
Challenges in computational discovery of bioactive peptides in 'omics data. Proteomics (2024)
Yiqian Duan, Santos-Júnior Célio Dias, Thomas Sebastian Benedikt Schmidt, Anthony Fullam, Breno L S de Almeida, Chengkai Zhu, Michael Kuhn, Xing-Ming Zhao, Peer Bork, Luis Pedro Coelho
A catalog of small proteins from the global microbiome. Nature communications 15 (1) (2024)
Luis Pedro Coelho, Santos-Júnior Célio Dias, de la Fuente-Nunez Cesar
Challenges in computational discovery of bioactive peptides in 'omics data. Proteomics 24 (12-13) (2024)
Marija Dmitrijeva, Janko Tackmann, Joao Frederico Matias Rodrigues, Jaime Huerta-Cepas, Luis Pedro Coelho, Christian von Mering
A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer. Nature ecology & evolution 8 (5) (2024)
Marija Dmitrijeva, Janko Tackmann, Joao Frederico Matias Rodrigues, Jaime Huerta-Cepas, Luis Pedro Coelho, Christian von Mering
A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer. Nature ecology & evolution (2024)
Luis Pedro Coelho, Santos-Júnior Célio Dias, de la Fuente-Nunez Cesar
Challenges in computational discovery of bioactive peptides in 'omics data. Proteomics 24 (12-13) (2024)
Luis Pedro Coelho
For long-term sustainable software in bioinformatics. PLoS computational biology 20 (3) (2024)
Santos-Júnior Célio Dias, Marcelo Der Torossian Torres, Yiqian Duan, Rodríguez Del Río Álvaro, Thomas Sebastian Benedikt Schmidt, Chong Hui, Anthony Fullam, Michael Kuhn, Zhu Chengkai, Houseman Amy, Somborski Jelena, Vines Anna, Xing-Ming Zhao, Peer Bork, Huerta-Cepas Jaime, de la Fuente-Nunez Cesar, Luis Pedro Coelho
Computational exploration of the global microbiome for antibiotic discovery. bioRxiv : the preprint server for biology (2023)
Shaojun Pan, Xing-Ming Zhao, Luis Pedro Coelho
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing. Bioinformatics (Oxford, England) 39 (39 Suppl 1) (2023)
Rémi Gschwind, Svetlana Ugarcina Perovic, Maja Weiss, Marie Petitjean, Julie Lao, Luis Pedro Coelho, Etienne Ruppé
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics. Nucleic acids research (2023)
Thomas Sebastian Benedikt Schmidt, Anthony Fullam, Pamela Ferretti, Askarbek Orakov, Oleksandr M Maistrenko, Hans-Joachim Ruscheweyh, Ivica Letunic, Yiqian Duan, Thea Van Rossum, Shinichi Sunagawa, Daniel R Mende, Robert D Finn, Michael Kuhn, Luis Pedro Coelho, Peer Bork
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource. Nucleic acids research (2023)
Shaojun Pan, Chengkai Zhu, Xing-Ming Zhao, Luis Pedro Coelho
A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments. Nature communications 13 (1) (2022)
Luis Pedro Coelho, Renato Jc Alves, Rodríguez Del Río Álvaro, Pernille Neve Myers, Carlos P Cantalapiedra, Joaquín Giner-Lamia, Thomas Sebastian Schmidt, Daniel R Mende, Askarbek Orakov, Ivica Letunic, Falk Hildebrand, Thea Van Rossum, Sofia Kirke Forslund-Startceva, Supriya Khedkar, Oleksandr M Maistrenko, Shaojun Pan, Longhao Jia, Pamela Ferretti, Shinichi Sunagawa, Xing-Ming Zhao, Henrik Bjørn Nielsen, Huerta-Cepas Jaime, Peer Bork
Towards the biogeography of prokaryotic genes. Nature 601 (7892) (2021)
Santos-Júnior Célio Dias, Shaojun Pan, Xing-Ming Zhao, Luis Pedro Coelho
Macrel: antimicrobial peptide screening in genomes and metagenomes. PeerJ 8 (2020)
Luis Pedro Coelho
Voices of the new generation: science in a state of benign confusion. Nature reviews. Molecular cell biology 21 (10) (2020)
Sara Vieira-Silva, Gwen Falony, Eugeni Belda, Trine Nielsen, Judith Aron-Wisnewsky, Rima Chakaroun, Sofia K Forslund, Karen Assmann, Mireia Valles-Colomer, Thi Thuy Duyen Nguyen, Sebastian Proost, Edi Prifti, Valentina Tremaroli, Nicolas Pons, Emmanuelle Le Chatelier, Fabrizio Andreelli, Jean-Phillippe Bastard, Luis Pedro Coelho, Nathalie Galleron, Tue H Hansen, Jean-Sébastien Hulot, Christian Lewinter, Helle K Pedersen, Benoit Quinquis, Christine Rouault, Hugo Roume, Joe-Elie Salem, Nadja B Sønderskov, Sothea Touch, null null, Marc Emmanuel Dumas, Stanislav Dusko Ehrlich, Pilar Galan, Jens P Gøtze, Torben Hansen, Jens Juul Holst, Lars Køber, Ivica Letunic, Jens B Nielsen, Jean-Michel Oppert, Michael Stumvoll, Henrik Vestergaard, Jean-Daniel Zucker, Peer Bork, Oluf Pedersen, Fredrik Bäckhed, Karine Clement, Jeroen Raes
Statin therapy is associated with lower prevalence of gut microbiota dysbiosis. Nature 581 (7808) (2020)
Alessio Milanese, Daniel R Mende, Lucas Paoli, Guillem Salazar, Hans-Joachim Ruscheweyh, Miguelangel Cuenca, Pascal Hingamp, Renato Jc Alves, Paul Igor Costea, Luis Pedro Coelho, Thomas Sebastian Benedikt Schmidt, Alexandre Almeida, Alex L Mitchell, Robert D Finn, Jaime Huerta-Cepas, Peer Bork, Georg Zeller, Shinichi Sunagawa
Microbial abundance, activity and population genomic profiling with mOTUs2. Nature communications 10 (1) (2019)
Thomas Sebastian Benedikt Schmidt, Matthew R Hayward, Luis Pedro Coelho, Simone S Li, Paul I Costea, Anita Y Voigt, Jakob Wirbel, Oleksandr M Maistrenko, Renato Jc Alves, Emma Bergsten, Carine de Beaufort, Iradj Sobhani, Anna Heintz-Buschart, Shinichi Sunagawa, Georg Zeller, Paul Wilmes, Peer Bork
Extensive transmission of microbes along the gastrointestinal tract. eLife 8 (2019)
Luis Pedro Coelho, Renato Alves, Paulo Monteiro, Jaime Huerta-Cepas, Ana Teresa Freitas, Peer Bork
NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language. Microbiome 7 (1) (2019)
Luis Pedro Coelho, Jens Roat Kultima, Paul Igor Costea, Coralie Fournier, Yuanlong Pan, Gail Czarnecki-Maulden, Matthew Robert Hayward, Sofia K Forslund, Thomas Sebastian Benedikt Schmidt, Patrick Descombes, Janet R Jackson, Qinghong Li, Peer Bork
Similarity of the dog and human gut microbiomes in gene content and response to diet. Microbiome 6 (1) (2018)
Albert Palleja, Kristian H Mikkelsen, Sofia K Forslund, Alireza Kashani, Kristine H Allin, Trine Nielsen, Tue Haldor Hansen, Suisha Liang, Qiang Feng, Chenchen Zhang, Paul Theodor Pyl, Luis Pedro Coelho, Huanming Yang, Jian Wang, Athanasios Typas, Morten F Nielsen, Henrik Bjorn Nielsen, Peer Bork, Jun Wang, Tina Vilsbøll, Torben Hansen, Filip K Krag Knop, Manimozhiyan Arumugam, Oluf Pedersen
Recovery of gut microbiota of healthy adults following antibiotic exposure. Nature microbiology 3 (11) (2018)
Paul Igor Costea, Georg Zeller, Shinichi Sunagawa, Eric Pelletier, Adriana Alberti, Florence Levenez, Melanie Tramontano, Marja Driessen, Rajna Hercog, Ferris-Elias Jung, Jens Roat Kultima, Matthew R Hayward, Luis Pedro Coelho, Emma Allen-Vercoe, Laurie Bertrand, Michael Blaut, Jillian R M Brown, Thomas Carton, Stéphanie Cools-Portier, Michelle Daigneault, Muriel Derrien, Anne Druesne, Willem Meindert de Vos, B Brett Finlay, Harry J Flint, Francisco Guarner, Masahira Hattori, Hans Heilig, Ruth Ann Luna, Johan van Hylckama Vlieg, Jana Junick, Ingeborg Klymiuk, Philippe Langella, Emmanuelle Le Chatelier, Volker Mai, Chaysavanh Manichanh, Jennifer C Martin, Clémentine Mery, Hidetoshi Morita, Paul W O'Toole, Céline Orvain, Kiran Raosaheb Patil, John Penders, Søren Persson, Nicolas Pons, Milena Popova, Anne Salonen, Delphine Saulnier, Karen P Scott, Bhagirath Singh, Kathleen Slezak, Patrick Veiga, James Versalovic, Liping Zhao, Erwin G Zoetendal, S Dusko Ehrlich, Joel Dore, Peer Bork
Towards standards for human fecal sample processing in metagenomic studies. Nature biotechnology 35 (11) (2017)
Sébastien Colin, Luis Pedro Coelho, Shinichi Sunagawa, Chris Bowler, Eric Karsenti, Peer Bork, Rainer Pepperkok, Colomban de Vargas
Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes. eLife 6 (2017)

Luis Pedro Coelho.css-eqlu8i{font-size:small;padding-left:4px;} (Luis P Coelho, Coelho Luis Pedro)

Publication Activity (10 Years)

Top Topics

Top Venues

Luis Pedro Coelho (Luis P Coelho, Coelho Luis Pedro)