Yi Xing

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 21

Top Venues

Science advances

Nature communications

Nature protocols

Communications biology

Children's Hospital of Philadelphia

University of California Los Angeles (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Children's Hospital of Philadelphia Sep 01 2018

United States

Director :: Center for Computational and Genomic Medicine

University of Pennsylvania Sep 01 2018

United States

Professor

University of California Los Angeles Jul 01 2016 - Aug 31 2018

United States

Professor

University of California Los Angeles Jan 01 2013 - Jun 30 2016

United States

Associate Professor

University of Iowa Jul 01 2012 - Dec 31 2012

United States

Associate Professor

University of Iowa Oct 01 2007 - Jun 30 2012

United States

Assistant Professor

Education History

University of California Los Angeles Sep 01 2001 - Jun 30 2006

United States

PHD :: Molecular Biology (Bioinformatics)

Publications

Lei Shen, Xiaokuang Ma, Yuanyuan Wang, Zhihao Wang, Yi Zhang, Hoang Quoc Hai Pham, Xiaoqun Tao, Yuehua Cui, Jing Wei, Dimitri Lin, Tharindumala Abeywanada, Swanand Hardikar, Levon Halabelian, Noah Smith, Jiameng Dan, Dalia Barsyte-Lovejoy, Shenfeng Qiu, Yi Xing, Yanzhong Yang
Loss-of-function mutation in PRMT9 causes abnormal synapse development by dysregulation of RNA alternative splicing. Nature communications 15 (1) (2024)
Yuanyuan Wang, Zhijie Xie, Eric Kutschera, Jenea Imani Adams, Kathryn E Kadash-Edmondson, Yi Xing
rMATS-turbo: an efficient and flexible computational tool for alternative splicing analysis of large-scale RNA-seq data. Nature protocols 19 (4) (2024)
Yuanyuan Wang, Zhijie Xie, Eric Kutschera, Jenea Imani Adams, Kathryn E Kadash-Edmondson, Yi Xing
rMATS-turbo: an efficient and flexible computational tool for alternative splicing analysis of large-scale RNA-seq data. Nature protocols 19 (4) (2024)
Yuanyuan Wang, Zhijie Xie, Eric Kutschera, Jenea Imani Adams, Kathryn E Kadash-Edmondson, Yi Xing
rMATS-turbo: an efficient and flexible computational tool for alternative splicing analysis of large-scale RNA-seq data. Nature protocols (2024)
Caroline Caetano Silva, Claudio Macias Trevino, Jason Mitchell, Hemma Murali, Casey Tsimbal, Eileen Dalessandro, Shannon H Carroll, Simren Kochhar, Sarah W Curtis, Ching Hsun Eric Cheng, Feng Wang, Eric Kutschera, Russ P Carstens, Yi Xing, Kai Wang, Elizabeth J Leslie, Eric C Liao
Functional analysis of ESRP1/2 gene variants and CTNND1 isoforms in orofacial cleft pathogenesis. Communications biology 7 (1) (2024)
Lei Shen, Xiaokuang Ma, Yuanyuan Wang, Zhihao Wang, Yi Zhang, Hoang Quoc Hai Pham, Xiaoqun Tao, Yuehua Cui, Jing Wei, Dimitri Lin, Tharindumala Abeywanada, Swanand Hardikar, Levon Halabelian, Noah Smith, Jiameng Dan, Dalia Barsyte-Lovejoy, Shenfeng Qiu, Yi Xing, Yanzhong Yang
Loss-of-function mutation in PRMT9 causes abnormal synapse development by dysregulation of RNA alternative splicing. Nature communications 15 (1) (2024)
Lei Shen, Xiaokuang Ma, Yuanyuan Wang, Zhihao Wang, Yi Zhang, Hoang Quoc Hai Pham, Xiaoqun Tao, Yuehua Cui, Jing Wei, Dimitri Lin, Tharindumala Abeywanada, Swanand Hardikar, Levon Halabelian, Noah Smith, Jiameng Dan, Dalia Barsyte-Lovejoy, Shenfeng Qiu, Yi Xing, Yanzhong Yang
Loss-of-function mutation in PRMT9 causes abnormal synapse development by dysregulation of RNA alternative splicing. Nature communications 15 (1) (2024)
Caroline Caetano Silva, Claudio Macias Trevino, Jason Mitchell, Hemma Murali, Casey Tsimbal, Eileen Dalessandro, Shannon H Carroll, Simren Kochhar, Sarah W Curtis, Ching Hsun Eric Cheng, Feng Wang, Eric Kutschera, Russ P Carstens, Yi Xing, Kai Wang, Elizabeth J Leslie, Eric C Liao
Functional analysis of ESRP1/2 gene variants and CTNND1 isoforms in orofacial cleft pathogenesis. Communications biology 7 (1) (2024)
Caroline Caetano Silva, Claudio Macias Trevino, Jason Mitchell, Hemma Murali, Casey Tsimbal, Eileen Dalessandro, Shannon H Carroll, Simren Kochhar, Sarah W Curtis, Ching Hsun Eric Cheng, Feng Wang, Eric Kutschera, Russ P Carstens, Yi Xing, Kai Wang, Elizabeth J Leslie, Eric C Liao
Functional analysis of ESRP1/2 gene variants and CTNND1 isoforms in orofacial cleft pathogenesis. Communications biology 7 (1) (2024)
Yuan Gao, Feng Wang, Robert Wang, Eric Kutschera, Yang Xu, Stephan Xie, Yuanyuan Wang, Kathryn E Kadash-Edmondson, Lan Lin, Yi Xing
ESPRESSO: Robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data. Science advances 9 (3) (2023)
Yuan Gao, Feng Wang, Robert Wang, Eric Kutschera, Yang Xu, Stephan Xie, Yuanyuan Wang, Kathryn E Kadash-Edmondson, Lan Lin, Yi Xing
ESPRESSO: Robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data. Science advances 9 (3) (2023)
Robert Wang, Ingo Helbig, Andrew C Edmondson, Lan Lin, Yi Xing
Splicing defects in rare diseases: transcriptomics and machine learning strategies towards genetic diagnosis. Briefings in bioinformatics (2023)
Feng Wang, Yang Xu, Robert Wang, Beatrice D Zhang, Noah Smith, Amber Notaro, Samantha Gaerlan, Eric Kutschera, Kathryn E Kadash-Edmondson, Yi Xing, Lan Lin
TEQUILA-seq: a versatile and low-cost method for targeted long-read RNA sequencing. Nature communications 14 (1) (2023)
Yuan Gao, Feng Wang, Robert Wang, Eric Kutschera, Yang Xu, Stephan Xie, Yuanyuan Wang, Kathryn E Kadash-Edmondson, Lan Lin, Yi Xing
ESPRESSO: Robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data. Science advances 9 (3) (2023)
Yuan Gao, Feng Wang, Robert Wang, Eric Kutschera, Yang Xu, Stephan Xie, Yuanyuan Wang, Kathryn E Kadash-Edmondson, Lan Lin, Yi Xing
ESPRESSO: Robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data. Science advances 9 (3) (2023)
Yuan Gao, Feng Wang, Robert Wang, Eric Kutschera, Yang Xu, Stephan Xie, Yuanyuan Wang, Kathryn E Kadash-Edmondson, Lan Lin, Yi Xing
ESPRESSO: Robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data. Science advances 9 (3) (2023)
Eddie Park, Yan Jiang, Lili Hao, Jingyi Hui, Yi Xing
Genetic variation and microRNA targeting of A-to-I RNA editing fine tune human tissue transcriptomes. Genome biology 22 (1) (2021)
Ruijiao Xin, Yan Gao, Yuan Gao, Robert Wang, Kathryn E Kadash-Edmondson, Bo Liu, Yadong Wang, Lan Lin, Yi Xing
isoCirc catalogs full-length circular RNA isoforms in human transcriptomes. Nature communications 12 (1) (2021)
Kyu-Hyeon Yeom, Zhicheng Pan, Chia-Ho Lin, Han Young Lim, Wen Xiao, Yi Xing, Douglas L Black
Tracking pre-mRNA maturation across subcellular compartments identifies developmental gene regulation through intron retention and nuclear anchoring. Genome research 31 (6) (2021)
Hao Chen, Lei Gu, Esteban A Orellana, Yuanyuan Wang, Jiaojiao Guo, Qi Liu, Longfei Wang, Zhangfei Shen, Hao Wu, Richard I Gregory, Yi Xing, Yang Shi
METTL4 is an snRNA m6Am methyltransferase that regulates RNA splicing. Cell research 30 (6) (2020)
Zijun Zhang, Zhicheng Pan, Yi Ying, Zhijie Xie, Samir Adhikari, John Phillips, Russ P Carstens, Douglas L Black, Yingnian Wu, Yi Xing
Deep-learning augmented RNA-seq analysis of transcript splicing. Nature methods 16 (4) (2019)

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Publication Activity (10 Years)

Top Topics

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Yi Xing