Kai Wang

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 35

Top Venues

Nature communications

Genome biology

Communications biology

NAR genomics and bioinformatics

University of Pennsylvania

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Pennsylvania Jan 01 2018

United States

Associate Professor :: Department of Pathology

Columbia University Sep 01 2016 - Dec 01 2017

United States

Associate Professor :: Biomedical Informatics

University of Southern California Sep 01 2010 - Aug 31 2016

United States

Associate Professor :: Zilkha Neurogenetic Institute

Children's Hospital of Philadelphia Sep 01 2006 - Aug 31 2008

United States

Postdoctoral Fellow :: Center for Applied Genomics

University of Pennsylvania Jul 01 2006 - Aug 31 2008

United States

Postdoctoral fellow :: Department of Genetics

Publications

Mian Umair Ahsan, Anagha Gouru, Joe Chan, Wanding Zhou, Kai Wang
A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing. Nature communications 15 (1) (2024)
Wanjing Lai, Yingying Zhao, Yalan Chen, Zhenzhu Dai, Ruhai Chen, Yimei Niu, Xiaoxia Chen, Shuting Chen, Guanqun Huang, Ziyun Shan, Jiajun Zheng, Yu Hu, Qingpei Chen, Siyi Gong, Sai Kang, Hui Guo, Xiaokuang Ma, Youqiang Song, Kun Xia, Jie Wang, Libing Zhou, Kowk-Fai So, Kai Wang, Shenfeng Qiu, Li Zhang, Jie-Kai Chen, Lingling Shi
Autism patient-derived SHANK2B Y29X mutation affects the development of ALDH1A1 negative dopamine neuron. Molecular psychiatry (2024)
Mian Umair Ahsan, Anagha Gouru, Joe Chan, Wanding Zhou, Kai Wang
A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing. Nature communications 15 (1) (2024)
Mian Umair Ahsan, Anagha Gouru, Joe Chan, Wanding Zhou, Kai Wang
A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing. Nature communications 15 (1) (2024)
Mian Umair Ahsan, Anagha Gouru, Joe Chan, Wanding Zhou, Kai Wang
A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing. Nature communications 15 (1) (2024)
Caroline Caetano Silva, Claudio Macias Trevino, Jason Mitchell, Hemma Murali, Casey Tsimbal, Eileen Dalessandro, Shannon H Carroll, Simren Kochhar, Sarah W Curtis, Ching Hsun Eric Cheng, Feng Wang, Eric Kutschera, Russ P Carstens, Yi Xing, Kai Wang, Elizabeth J Leslie, Eric C Liao
Functional analysis of ESRP1/2 gene variants and CTNND1 isoforms in orofacial cleft pathogenesis. Communications biology 7 (1) (2024)
Mian Umair Ahsan, Anagha Gouru, Joe Chan, Wanding Zhou, Kai Wang
A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing. Nature communications 15 (1) (2024)
Caroline Caetano Silva, Claudio Macias Trevino, Jason Mitchell, Hemma Murali, Casey Tsimbal, Eileen Dalessandro, Shannon H Carroll, Simren Kochhar, Sarah W Curtis, Ching Hsun Eric Cheng, Feng Wang, Eric Kutschera, Russ P Carstens, Yi Xing, Kai Wang, Elizabeth J Leslie, Eric C Liao
Functional analysis of ESRP1/2 gene variants and CTNND1 isoforms in orofacial cleft pathogenesis. Communications biology 7 (1) (2024)
Mian Umair Ahsan, Anagha Gouru, Joe Chan, Wanding Zhou, Kai Wang
A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing. Nature communications 15 (1) (2024)
Caroline Caetano Silva, Claudio Macias Trevino, Jason Mitchell, Hemma Murali, Casey Tsimbal, Eileen Dalessandro, Shannon H Carroll, Simren Kochhar, Sarah W Curtis, Ching Hsun Eric Cheng, Feng Wang, Eric Kutschera, Russ P Carstens, Yi Xing, Kai Wang, Elizabeth J Leslie, Eric C Liao
Functional analysis of ESRP1/2 gene variants and CTNND1 isoforms in orofacial cleft pathogenesis. Communications biology 7 (1) (2024)
Karleena Rybacki, Mingyi Xia, Mian Umair Ahsan, Jinchuan Xing, Kai Wang
Assessing the Expression of Long INterspersed Elements (LINEs) via Long-Read Sequencing in Diverse Human Tissues and Cell Lines. Genes 14 (10) (2023)
Mian Umair Ahsan, Qian Liu, Jonathan Elliot Perdomo, Li Fang, Kai Wang
A survey of algorithms for the detection of genomic structural variants from long-read sequencing data. Nature methods (2023)
Michael A Gargano, Nicolas A Matentzoglu, Ben Coleman, Eunice B Addo-Lartey, Anna V Anagnostopoulos, Joel Anderton, Paul Avillach, Anita M Bagley, Eduard Bakštein, James P Balhoff, Gareth Baynam, Susan M Bello, Michael Berk, Holli Bertram, Somer L Bishop, Hannah Blau, David F Bodenstein, Pablo Botas, Kaan Boztug, Jolana Čady, Tiffany J Callahan, Rhiannon Cameron, Seth J Carbon, Francisco Castellanos, J Harry Caufield, Lauren E Chan, Christopher G Chute, Jaime Cruz-Rojo, Noemi Dahan-Oliel, Jon Robert Davids, Maud De Dieuleveult, Vinicius de Souza, Bert B A de Vries, Esther de Vries, J Raymond DePaulo, Beata Derfalvi, Ferdinand Dhombres, Claudia Diaz-Byrd, Alexander J M Dingemans, Bruno Donadille, Michael Henri Duyzend, Reem Elfeky, Shahim Essaid, Carolina Fabrizzi, Giovanna Fico, Helen V Firth, Yun Freudenberg-Hua, Janice M Fullerton, Davera L Gabriel, Kimberley C Gilmour, Jessica L Giordano, Fernando S Goes, Rachel Gore Moses, Ian Green, Matthias Griese, Tudor Groza, Weihong Gu, Julia Pazmandi, Benjamin M Gyori, Ada Hamosh, Marc Hanauer, Kateřina Hanušová, Yongqun Oliver He, Harshad Hegde, Ingo Helbig, Kateřina Řehořová, Charles Tapley Hoyt, Shangzhi Huang, Eric Hurwitz, Julius O B Jacobsen, Xiaofeng Jiang, Lisa Joseph, Kamyar Keramatian, Bryan King, Katrin Knoflach, David A Koolen, Megan L Kraus, Carlo Kroll, Maaike A A Kusters, Markus S Ladewig, David Lagorce, Meng-Chuan Lai, Pablo Lapunzina, Bryan Laraway, David Lewis-Smith, Xiarong Li, Caterina Lucano, Marzieh Majd, Mary L Marazita, Victor Martínez-González, Toby H McHenry, Melvin G McInnis, Julie A McMurry, Michaela Zelinová, Caitlin E Millett, Philip B Mitchell, Veronika Moslerová, Kenji Narutomi, Shahrzad Nematollahi, Julián Nevado, Andrew A Nierenberg, Nikola Novák Čajbiková, Michael C Neale, Soichi Ogishima, Daniel Olson, Abigail Ortiz, Harry Pachajoa, Guiomar Perez de Nanclares, Amy T Peters, Timothy Putman, Christina K Rapp, Ana Rath, Justin T Reese, Lauren Rekerle, Angharad M Roberts, Suzy Roy, Stephan J Sanders, Catharina Schuetz, Eva C Schulte, Thomas G Schulze, Martin Schwarz, Katie Scott, Dominik Seelow, Berthold Seitz, Yiping Shen, Morgan N Similuk, Eric S Simon, Balwinder Singh, Damian Smedley, Cynthia L Smith, Jake T Smolinsky, Sarah H Sperry, Elizabeth Stafford, Ray Stefancsik, Robin Steinhaus, Rebecca Strawbridge, Jagadish Chandrabose Sundaramurthi, Polina Talapova, Jair Antonio Tenorio Castaño, Pavel Tesner, Rhys Huw Thomas, Audrey Thurm, Marek Turnovec, Marielle E van Gijn, Nicole A Vasilevsky, Markéta Vlčková, Anita Walden, Kai Wang, Ronald J Wapner, James Simon Ware, Addo A Wiafe, Samuel A Wiafe, Lisa D Wiggins, Andrew E Williams, Chen Wu, Margot Julia Wyrwoll, Hui Xiong, Nefize Yalin, Yasunori Yamamoto, Lakshmi N Yatham, Anastasia K Yocum, Allan H Young, Zafer Yüksel, Peter P Zandi, Andreas Zankl, Ignacio Zarante, Miroslav Zvolský, Sabrina Toro, Leigh C Carmody, Nomi L Harris, Monica C Munoz-Torres, Daniel Danis, Christopher John Mungall, Sebastian Koehler, Melissa A Haendel, Peter Nick Robinson
The Human Phenotype Ontology in 2024: phenotypes around the world. Nucleic acids research (2023)
Zhuoran Xu, Quan Li, Luigi Marchionni, Kai Wang
PhenoSV: interpretable phenotype-aware model for the prioritization of genes affected by structural variants. Nature communications 14 (1) (2023)
Li Fang, Kai Wang
Polishing high-quality genome assemblies. Nature methods 19 (6) (2022)
Abolfazl Doostparast Torshizi, Kai Wang
Tissue-wide cell-specific proteogenomic modeling reveals novel candidate risk genes in autism spectrum disorders. NPJ systems biology and applications 8 (1) (2022)
Jacqueline Peng, David Xu, Ryan Lee, Siwei Xu, Yunyun Zhou, Kai Wang
Expediting knowledge acquisition by a web framework for Knowledge Graph Exploration and Visualization (KGEV): case studies on COVID-19 and Human Phenotype Ontology. BMC medical informatics and decision making 22 (Suppl 2) (2022)
Michelle A Wedemeyer, Ivo Muskens, Ben A Strickland, Oscar Aurelio, Vahan Martirosian, Joseph L Wiemels, Daniel J Weisenberger, Kai Wang, Debraj Mukerjee, Suhn K Rhie, Gabriel Zada
Epigenetic dysregulation in meningiomas. Neuro-oncology advances 4 (1) (2022)
Quan Li, Zi-Lin Ren, Kajia Cao, Marilyn M Li, Kai Wang, Yunyun Zhou
CancerVar: An artificial intelligence-empowered platform for clinical interpretation of somatic mutations in cancer. Science advances 8 (18) (2022)
Anna Nixon, Li Fang, James M Havrilla, Kai Wang
Termviewer - A Web Application for Streamlined Human Phenotype Ontology (HPO) Tagging and Document Annotation. Chemistry & biodiversity (2022)
Li Fang, Qian Liu, Alex Mas Monteys, Pedro Gonzalez-Alegre, Beverly L Davidson, Kai Wang
DeepRepeat: direct quantification of short tandem repeats on signal data from nanopore sequencing. Genome biology 23 (1) (2022)
Changya Chen, Wenbao Yu, Fatemeh Alikarami, Qi Qiu, Chia-Hui Chen, Jennifer Flournoy, Peng Gao, Yasin Uzun, Li Fang, James W Davenport, Yuxuan Hu, Qin Zhu, Kai Wang, Clara Libbrecht, Alex S Felmeister, Isaiah Rozich, Yang-Yang Ding, Stephen P Hunger, Carolyn A Felix, Hao Wu, Patrick A Brown, Erin M Guest, David M Barrett, Kathrin Maria Bernt, Kai Tan
Single-cell multiomics reveals increased plasticity, resistant populations and stem-cell-like blasts in KMT2A-rearranged leukemia. Blood (2021)
Yu Hu, Li Fang, Xuelian Chen, Jiang F Zhong, Mingyao Li, Kai Wang
LIQA: long-read isoform quantification and analysis. Genome biology 22 (1) (2021)
James M Havrilla, Cong Liu, Xiangchen Dong, Chunhua Weng, Kai Wang
PhenCards: a data resource linking human phenotype information to biomedical knowledge. Genome medicine 13 (1) (2021)
Abolfazl Doostparast Torshizi, Jubao Duan, Kai Wang
A computational method for direct imputation of cell type-specific expression profiles and cellular compositions from bulk-tissue RNA-Seq in brain disorders. NAR genomics and bioinformatics 3 (2) (2021)
Mian Umair Ahsan, Qian Liu, Li Fang, Kai Wang
NanoCaller for accurate detection of SNPs and indels in difficult-to-map regions from long-read sequencing by haplotype-aware deep neural networks. Genome biology 22 (1) (2021)
Qian Liu, Yu Hu, Andres Stucky, Li Fang, Jiang F Zhong, Kai Wang
LongGF: computational algorithm and software tool for fast and accurate detection of gene fusions by long-read transcriptome sequencing. BMC genomics 21 (Suppl 11) (2020)
Dandan Huang, Xianfu Yi, Yao Zhou, Hongcheng Yao, Hang Xu, Jianhua Wang, Shijie Zhang, Wenyan Nong, Panwen Wang, Lei Shi, Chenghao Xuan, Miaoxin Li, Junwen Wang, Weidong Li, Hoi Shan Kwan, Pak Chung Sham, Kai Wang, Mulin Jun Li
Ultrafast and scalable variant annotation and prioritization with big functional genomics data. Genome research 30 (12) (2020)
Qian Liu, Yao Tong, Kai Wang
Genome-wide detection of short tandem repeat expansions by long-read sequencing. BMC bioinformatics 21 (Suppl 21) (2020)
Yu Hu, Kai Wang, Mingyao Li
Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers. PLoS computational biology 16 (6) (2020)
Mengge Zhao, James M Havrilla, Li Fang, Ying Chen, Jacqueline Peng, Cong Liu, Chao Wu, Mahdi Sarmady, Pablo Botas, Julián Isla, Gholson J Lyon, Chunhua Weng, Kai Wang
Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases. NAR genomics and bioinformatics 2 (2) (2020)
Li Fang, Charlly Kao, Michael V Gonzalez, Fernanda A Mafra, Renata Pellegrino da Silva, Mingyao Li, Sören-Sebastian Wenzel, Katharina Wimmer, Hakon H Hakonarson, Kai Wang
LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data. Nature communications 10 (1) (2019)
Abolfazl Doostparast Torshizi, Chris Armoskus, Hanwen Zhang, Marc P Forrest, Siwei Zhang, Tade Souaiaia, Oleg V Evgrafov, James A Knowles, Jubao Duan, Kai Wang
Deconvolution of transcriptional networks identifies TCF4 as a master regulator in schizophrenia. Science advances 5 (9) (2019)
Gangcai Xie, Chengliang Dong, Yinfei Kong, Jiang F Zhong, Mingyao Li, Kai Wang
Group Lasso Regularized Deep Learning for Cancer Prognosis from Multi-Omics and Clinical Features. Genes 10 (3) (2019)
Yi Dai, Pidong Li, Zhiqiang Wang, Fan Liang, Fan Yang, Li Fang, Yu Huang, Shangzhi Huang, Jiapeng Zhou, Depeng Wang, Liying Cui, Kai Wang
Single-molecule optical mapping enables quantitative measurement of D4Z4 repeats in facioscapulohumeral muscular dystrophy (FSHD). Journal of medical genetics 57 (2) (2019)

Kai Wang.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Kai Wang