Ying-Bei Chen (David Chen, Yingbei Chen, Ying Bei Chen)

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 26

Top Topics

Mitochondrial Dna

Prostate Cancer

Renal Cell Carcinoma

Top Venues

Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc

Nature communications

Clinical cancer research : an official journal of the American Association for Cancer Research

Cancer discovery

This page only lists publications with an associated author ORCID identifier.

Publications

Luigi Perelli, Federica Carbone, Li Zhang, Justin K Huang, Courtney N Le, Hania Khan, Francesca Citron, Edoardo Del Poggetto, Tony Gutschner, Hideo Tomihara, Melinda Soeung, Rosalba Minelli, Sanjana Srinivasan, Michael Peoples, Truong Nguyen Anh Lam, Sebastian Lundgren, Ruohan Xia, Cihui Zhu, Alaa M T Mohamed, Jianhua Zhang, Kanishka Sircar, Alessandro Sgambato, Jianjun Gao, Eric Jonasch, Giulio F Draetta, P Andrew Futreal, Ziad Bakouny, Eliezer Van Allen, Toni K Choueiri, Sabina Signoretti, Pavlos Msaouel, Kevin Litchfield, Samra Turajlic, Linghua Wang, Ying-Bei Chen, Renzo G DiNatale, A Ari Hakimi, Virginia Giuliani, Timothy P Heffernan, Andrea Viale, Christopher A Bristow, Nizar M Tannir, Alessandro Carugo, Giannicola Genovese
Interferon signaling promotes tolerance to chromosomal instability during metastatic evolution in renal cancer. Nature cancer (2023)
Joshua I Warrick, Wenhuo Hu, Hironobu Yamashita, Vonn Walter, Lauren Shuman, Jenna M Craig, Lan L Gellert, Mauro A A Castro, A Gordon Robertson, Fengshen Kuo, Irina Ostrovnaya, Judy Sarungbam, Ying-Bei Chen, Anuradha Gopalan, Sahussapont J Sirintrapun, Samson W Fine, Satish K Tickoo, Kwanghee Kim, Jasmine Thomas, Nagar Karan, Sizhi Paul Gao, Timothy N Clinton, Andrew T Lenis, Timothy A Chan, Zhiyu Chen, Manisha Rao, Travis J Hollman, Yanyun Li, Nicholas D Socci, Shweta Chavan, Agnes Viale, Neeman Mohibullah, Bernard H Bochner, Eugene J Pietzak, Min Yuen Teo, Gopakumar V Iyer, Jonathan E Rosenberg, Dean F Bajorin, Matthew Kaag, Suzanne B Merrill, Monika Joshi, Rosalyn M Adam, John A Taylor, Peter E Clark, Jay D Raman, Victor E Reuter, Juliet Chen, Samuel A Funt, David B Solit, David J DeGraff, Hikmat A Al-Ahmadie
Author Correction: FOXA1 repression drives lineage plasticity and immune heterogeneity in bladder cancers with squamous differentiation. Nature communications 13 (1) (2022)
Phillip M Rappold, Lynda Vuong, Josef Leibold, Nicholas H Chakiryan, Michael Curry, Fengshen Kuo, Erich Sabio, Hui Jiang, Briana G Nixon, Ming Liu, Anders E Berglund, Andrew W Silagy, Eduardo A Mascareno, Mahdi Golkaram, Mahtab Marker, Albert Reising, Alexander Savchenko, John M Millholland, Ying-Bei Chen, Paul Russo, Jonathan A Coleman, Ed Reznik, Brandon J Manley, Irina Ostrovnaya, Vladimir Makarov, Renzo G DiNatale, Kyle A Blum, Xiaoxiao Ma, Diego Chowell, Ming O Li, David B Solit, Scott W Lowe, Timothy A Chan, Robert J Motzer, Martin H Voss, Abraham Ari Hakimi
A Targetable Myeloid Inflammatory State Governs Disease Recurrence in Clear-Cell Renal Cell Carcinoma. Cancer discovery 12 (10) (2022)
Nima Almassi, Karissa A Whiting, Antoun Toubaji, Andrew T Lenis, Emmet J Jordan, Helen Won, Ashley M Regazzi, Ying-Bei Chen, Anuradha Gopalan, Sahussapont Joseph Sirintrapun, Samson W Fine, Satish K Tickoo, Irina Ostrovnaya, Eugene J Pietzak, Eugene K Cha, Alvin C Goh, Timothy F Donahue, Harry W Herr, S Machele Donat, Guido Dalbagni, Bernard H Bochner, Min Yuen Teo, Samuel A Funt, Jonathan E Rosenberg, Victor E Reuter, Dean F Bajorin, David B Solit, Hikmat A Al-Ahmadie, Gopakumar V Iyer
Clinical and Genomic Characterization of Bladder Carcinomas With Glandular Phenotype. JCO precision oncology 6 (2022)
Chung-Han Lee, Martin H Voss, Maria Isabel Carlo, Ying-Bei Chen, Mark Zucker, Andrea Knezevic, Robert A Lefkowitz, Natalie Shapnik, Chloe Dadoun, Ed Reznik, Neil J Shah, Colette Ngozi Owens, Deaglan Joseph McHugh, David Henry Aggen, Andrew Leonard Laccetti, Ritesh R Kotecha, Darren R Feldman, Robert J Motzer
Phase II Trial of Cabozantinib Plus Nivolumab in Patients With Non-Clear-Cell Renal Cell Carcinoma and Genomic Correlates. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 40 (21) (2022)
Joshua I Warrick, Wenhuo Hu, Hironobu Yamashita, Vonn Walter, Lauren Shuman, Jenna M Craig, Lan L Gellert, Mauro A A Castro, A Gordon Robertson, Fengshen Kuo, Irina Ostrovnaya, Judy Sarungbam, Ying-Bei Chen, Anuradha Gopalan, Sahussapont J Sirintrapun, Samson W Fine, Satish K Tickoo, Kwanghee Kim, Jasmine Thomas, Nagar Karan, Sizhi Paul Gao, Timothy N Clinton, Andrew T Lenis, Timothy A Chan, Zhiyu Chen, Manisha Rao, Travis J Hollman, Yanyun Li, Nicholas D Socci, Shweta Chavan, Agnes Viale, Neeman Mohibullah, Bernard H Bochner, Eugene J Pietzak, Min Yuen Teo, Gopakumar V Iyer, Jonathan E Rosenberg, Dean F Bajorin, Matthew Kaag, Suzanne B Merrill, Monika Joshi, Rosalyn M Adam, John A Taylor, Peter E Clark, Jay D Raman, Victor E Reuter, Juliet Chen, Samuel A Funt, David B Solit, David J DeGraff, Hikmat A Al-Ahmadie
FOXA1 repression drives lineage plasticity and immune heterogeneity in bladder cancers with squamous differentiation. Nature communications 13 (1) (2022)
Victoria E Fincke, Mateja E Krulik, Piyush Joshi, Michael C Frühwald, Ying-Bei Chen, Pascal D Johann
Renal Medullary Carcinomas Harbor a Distinct Methylation Phenotype and Display Aberrant Methylation of Genes Related to Early Nephrogenesis. Cancers 14 (20) (2022)
Joshua I Warrick, Wenhuo Hu, Hironobu Yamashita, Vonn Walter, Lauren Shuman, Jenna M Craig, Lan L Gellert, Mauro A A Castro, A Gordon Robertson, Fengshen Kuo, Irina Ostrovnaya, Judy Sarungbam, Ying-Bei Chen, Anuradha Gopalan, Sahussapont J Sirintrapun, Samson W Fine, Satish K Tickoo, Kwanghee Kim, Jasmine Thomas, Nagar Karan, Sizhi Paul Gao, Timothy N Clinton, Andrew T Lenis, Timothy A Chan, Zhiyu Chen, Manisha Rao, Travis J Hollman, Yanyun Li, Nicholas D Socci, Shweta Chavan, Agnes Viale, Neeman Mohibullah, Bernard H Bochner, Eugene J Pietzak, Min Yuen Teo, Gopakumar V Iyer, Jonathan E Rosenberg, Dean F Bajorin, Matthew Kaag, Suzanne B Merrill, Monika Joshi, Rosalyn M Adam, John A Taylor, Peter E Clark, Jay D Raman, Victor E Reuter, Juliet Chen, Samuel A Funt, David B Solit, David J DeGraff, Hikmat A Al-Ahmadie
Author Correction: FOXA1 repression drives lineage plasticity and immune heterogeneity in bladder cancers with squamous differentiation. Nature communications 13 (1) (2022)
Joshua I Warrick, Wenhuo Hu, Hironobu Yamashita, Vonn Walter, Lauren Shuman, Jenna M Craig, Lan L Gellert, Mauro A A Castro, A Gordon Robertson, Fengshen Kuo, Irina Ostrovnaya, Judy Sarungbam, Ying-Bei Chen, Anuradha Gopalan, Sahussapont J Sirintrapun, Samson W Fine, Satish K Tickoo, Kwanghee Kim, Jasmine Thomas, Nagar Karan, Sizhi Paul Gao, Timothy N Clinton, Andrew T Lenis, Timothy A Chan, Zhiyu Chen, Manisha Rao, Travis J Hollman, Yanyun Li, Nicholas D Socci, Shweta Chavan, Agnes Viale, Neeman Mohibullah, Bernard H Bochner, Eugene J Pietzak, Min Yuen Teo, Gopakumar V Iyer, Jonathan E Rosenberg, Dean F Bajorin, Matthew Kaag, Suzanne B Merrill, Monika Joshi, Rosalyn M Adam, John A Taylor, Peter E Clark, Jay D Raman, Victor E Reuter, Juliet Chen, Samuel A Funt, David B Solit, David J DeGraff, Hikmat A Al-Ahmadie
Author Correction: FOXA1 repression drives lineage plasticity and immune heterogeneity in bladder cancers with squamous differentiation. Nature communications 13 (1) (2022)
Kiril Trpkov, Ondrej Hes, Sean R Williamson, Adebowale J Adeniran, Abbas Agaimy, Reza Alaghehbandan, Mahul B Amin, Pedram Argani, Ying-Bei Chen, Liang Cheng, Jonathan I Epstein, John C Cheville, Eva Comperat, Isabela Werneck da Cunha, Jennifer B Gordetsky, Sounak Gupta, Huiying He, Michelle S Hirsch, Peter A Humphrey, Payal Kapur, Fumiyoshi Kojima, Jose Ignacio López, Fiona Maclean, Cristina Magi-Galluzzi, Jesse K McKenney, Rohit Mehra, Santosh Menon, George J Netto, Christopher G Przybycin, Priya Rao, Qiu Rao, Victor E Reuter, Rola M Saleeb, Rajal B Shah, Steven Christopher Smith, Satish Tickoo, Maria S Tretiakova, Lawrence True, Virginie Verkarre, Sara E Wobker, Ming Zhou, Anthony J Gill
New developments in existing WHO entities and evolving molecular concepts: The Genitourinary Pathology Society (GUPS) update on renal neoplasia. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 34 (7) (2021)
Jack Patrick Gleeson, Ines Nikolovski, Renzo Dinatale, Mark Zucker, Andrea Knezevic, Sujata Patil, Yasser Ged, Ritesh R Kotecha, Natalie Shapnik, Samuel Murray, Paul Russo, Jonathan Coleman, Chung Han Lee, Zsofia K Stadler, A Ari Hakimi, Darren R Feldman, Robert J Motzer, Ed Reznik, Martin H Voss, Ying-Bei Chen, Maria Isabel Carlo
Comprehensive Molecular Characterization and Response to Therapy in Fumarate Hydratase-Deficient Renal Cell Carcinoma. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (10) (2021)
Paari Murugan, Liwei Jia, Renzo G DiNatale, Melissa Assel, Nicole Benfante, Hikmat A Al-Ahmadie, Samson W Fine, Anuradha Gopalan, Judy Sarungbam, Sahussapont Joseph Sirintrapun, Abraham Ari Hakimi, Paul Russo, Ying-Bei Chen, Satish K Tickoo, Victor E Reuter
Papillary renal cell carcinoma: a single institutional study of 199 cases addressing classification, clinicopathologic and molecular features, and treatment outcome. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 35 (6) (2021)
Kiril Trpkov, Sean R Williamson, Anthony J Gill, Adebowale J Adeniran, Abbas Agaimy, Reza Alaghehbandan, Mahul B Amin, Pedram Argani, Ying-Bei Chen, Liang Cheng, Jonathan I Epstein, John C Cheville, Eva Comperat, Isabela Werneck da Cunha, Jennifer B Gordetsky, Sounak Gupta, Huiying He, Michelle S Hirsch, Peter A Humphrey, Payal Kapur, Fumiyoshi Kojima, Jose Ignacio López, Fiona Maclean, Cristina Magi-Galluzzi, Jesse K McKenney, Rohit Mehra, Santosh Menon, George J Netto, Christopher G Przybycin, Priya Rao, Qiu Rao, Victor E Reuter, Rola M Saleeb, Rajal B Shah, Steven Christopher Smith, Satish Tickoo, Maria S Tretiakova, Lawrence True, Virginie Verkarre, Sara E Wobker, Ming Zhou, Ondrej Hes
Novel, emerging and provisional renal entities: The Genitourinary Pathology Society (GUPS) update on renal neoplasia. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 34 (6) (2021)
Ming O Li, Fengshen Kuo, Kristelle J Capistrano, Davina Kang, Briana G Nixon, Wei Shi, Chun Chou, Mytrang H Do, Efstathios G Stamatiades, Shengyu Gao, Shun Li, Ying-Bei Chen, James J Hsieh, Abraham Ari Hakimi, Ichiro Taniuchi, Timothy A Chan, Ming O Li
TGF-β suppresses type 2 immunity to cancer. Nature 587 (7832) (2020)
Sounak Gupta, Chad Vanderbilt, Wassim Abida, Samson W Fine, Satish K Tickoo, Hikmat A Al-Ahmadie, Ying-Bei Chen, Sahussapont J Sirintrapun, Kalyani Chadalavada, Gouri J Nanjangud, Ann Bialik, Michael J Morris, Howard I Scher, Marc Ladanyi, Victor E Reuter, Anuradha Gopalan
Immunohistochemistry-based assessment of androgen receptor status and the AR-null phenotype in metastatic castrate resistant prostate cancer. Prostate cancer and prostatic diseases 23 (3) (2020)
Chen Yang, Robert S Cimera, Ruth Aryeequaye, Gowtham Jayakumaran, Judy Sarungbam, Hikmat A Al-Ahmadie, Anuradha Gopalan, S Joseph Sirintrapun, Samson W Fine, Satish K Tickoo, Jonathan I Epstein, Victor E Reuter, Yanming Zhang, Ying-Bei Chen
Adverse histology, homozygous loss of CDKN2A/B, and complex genomic alterations in locally advanced/metastatic renal mucinous tubular and spindle cell carcinoma. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 34 (2) (2020)
Judy Sarungbam, Rohit Mehra, Scott A Tomlins, Steven Christopher Smith, Gowtham Jayakumaran, Hikmat Al-Ahmadie, Anuradha Gopalan, Sahussapont J Sirintrapun, Samson W Fine, Yanming Zhang, Mahul B Amin, Victor E Reuter, Ying-Bei Chen, Satish K Tickoo
Tubulocystic renal cell carcinoma: a distinct clinicopathologic entity with a characteristic genomic profile. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 32 (5) (2019)
Jianing Xu, Ed Reznik, Ho-Joon Lee, Gunes Gundem, Philip Jonsson, Judy Sarungbam, Anna Bialik, Francisco Sanchez-Vega, Chad J Creighton, Jake Hoekstra, Li Zhang, Peter Sajjakulnukit, Daniel Kremer, Zachary Tolstyka, Jozefina Casuscelli, Steve Stirdivant, Jie Tang, Nikolaus Schultz, Paul Jeng, Yiyu Dong, Wenjing Su, Emily H Cheng, Paul Russo, Jonathan A Coleman, Elli Papaemmanuil, Ying-Bei Chen, Victor E Reuter, Chris Sander, Scott R Kennedy, James J Hsieh, Costas A Lyssiotis, Satish K Tickoo, Abraham Ari Hakimi
Abnormal oxidative metabolism in a quiet genomic background underlies clear cell papillary renal cell carcinoma. eLife 8 (2019)
Sounak Gupta, John C Cheville, Achim A Jungbluth, Yanming Zhang, Lei Zhang, Ying-Bei Chen, Satish K Tickoo, Samson W Fine, Anuradha Gopalan, Hikmat A Al-Ahmadie, Sahussapont J Sirintrapun, Kyle A Blum, Christine M Lohse, A Ari Hakimi, R Houston Thompson, Bradley C Leibovich, Michael F Berger, Maria E Arcila, Dara S Ross, Marc Ladanyi, Cristina R Antonescu, Victor E Reuter
JAK2/PD-L1/PD-L2 (9p24.1) amplifications in renal cell carcinomas with sarcomatoid transformation: implications for clinical management. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 32 (9) (2019)
Liwei Jia, Maria I Carlo, Hina Khan, Gouri J Nanjangud, Satshil Rana, Robert Cimera, Yanming Zhang, A Ari Hakimi, Amit K Verma, Hikmat A Al-Ahmadie, Samson W Fine, Anuradha Gopalan, S Joseph Sirintrapun, Satish K Tickoo, Victor E Reuter, Benjamin A Gartrell, Ying-Bei Chen
Distinctive mechanisms underlie the loss of SMARCB1 protein expression in renal medullary carcinoma: morphologic and molecular analysis of 20 cases. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 32 (9) (2019)
A Ari Hakimi, Martin H Voss, Fengshen Kuo, Alejandro Sanchez, Ming Liu, Briana G Nixon, Lynda Vuong, Irina Ostrovnaya, Ying-Bei Chen, Victor Reuter, Nadeem Riaz, Yuan Cheng, Parul Patel, Mahtab Marker, Albert Reising, Ming O Li, Timothy A Chan, Robert J Motzer
Transcriptomic Profiling of the Tumor Microenvironment Reveals Distinct Subgroups of Clear Cell Renal Cell Cancer: Data from a Randomized Phase III Trial. Cancer discovery 9 (4) (2019)
Yiyu Dong, Roozbeh Eskandari, Chelsea Ray, Kristin L Granlund, Lidia Dos Santos-Cunha, Vesselin Z Miloushev, Sui Seng Tee, Sangmoo Jeong, Omer Aras, Ying-Bei Chen, Emily H Cheng, James J Hsieh, Kayvan R Keshari
Hyperpolarized MRI Visualizes Warburg Effects and Predicts Treatment Response to mTOR Inhibitors in Patient-Derived ccRCC Xenograft Models. Cancer research 79 (1) (2018)
Martin H Voss, Ying-Bei Chen, Albert Reising, Mahtab Marker, Jiayuan Shi, Jianning Xu, Irina Ostrovnaya, Venkatraman E Seshan, Almedina Redzematovic, Parul Patel, Xia Han, James J Hsieh, A Ari Hakimi, Robert J Motzer
PTEN Expression, Not Mutation Status in TSC1, TSC2, or mTOR, Correlates with the Outcome on Everolimus in Patients with Renal Cell Carcinoma Treated on the Randomized RECORD-3 Trial. Clinical cancer research : an official journal of the American Association for Cancer Research 25 (2) (2018)
Jennifer A Bennett, Britta Weigelt, Sarah Chiang, Pier Selenica, Ying-Bei Chen, Ann Bialik, Rui Bi, Anne M Schultheis, Raymond S Lim, Charlotte C K Ng, Vicente Morales-Oyarvide, Robert H Young, Victor E Reuter, Robert A Soslow, Esther Oliva
Leiomyoma with bizarre nuclei: a morphological, immunohistochemical and molecular analysis of 31 cases. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 30 (10) (2017)
Rileen Sinha, Andrew G Winer, Michael Chevinsky, Christopher Jakubowski, Ying-Bei Chen, Yiyu Dong, Satish K Tickoo, Victor E Reuter, Paul Russo, Jonathan A Coleman, Chris Sander, James J Hsieh, A Ari Hakimi
Analysis of renal cancer cell lines from two major resources enables genomics-guided cell line selection. Nature communications 8 (2017)
Ying-Bei Chen, Jianing Xu, Anders Jacobsen Skanderup, Yiyu Dong, A Rose Brannon, Lu Wang, Helen H Won, Patricia I Wang, Gouri J Nanjangud, Achim A Jungbluth, Wei Li, Virginia Ojeda, A Ari Hakimi, Martin H Voss, Nikolaus Schultz, Robert J Motzer, Paul Russo, Emily H Cheng, Filippo G Giancotti, William Lee, Michael F Berger, Satish K Tickoo, Victor E Reuter, James J Hsieh
Molecular analysis of aggressive renal cell carcinoma with unclassified histology reveals distinct subsets. Nature communications 7 (2016)