Yoshihiro Yamanishi

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 17

Top Topics

High Throughput Sequencing

Top Venues

Journal of chemical information and modeling

Nature computational science

Communications medicine

BMC bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Nanako Inoue, Tomokazu Shibata, Yusuke Tanaka, Hiromu Taguchi, Ryusuke Sawada, Kenshin Goto, Shogo Momokita, Morihiro Aoyagi, Takashi Hirao, Yoshihiro Yamanishi
Revealing Comprehensive Food Functionalities and Mechanisms of Action through Machine Learning. Journal of chemical information and modeling 64 (14) (2024)
Yuki Matsukiyo, Atsushi Tengeiji, Chen Li, Yoshihiro Yamanishi
Transcriptionally Conditional Recurrent Neural Network for De Novo Drug Design. Journal of chemical information and modeling (2024)
Midori Iida, Yurika Kuniki, Kenta Yagi, Mitsuhiro Goda, Satoko Namba, Jun-Ichi Takeshita, Ryusuke Sawada, Michio Iwata, Yoshito Zamami, Keisuke Ishizawa, Yoshihiro Yamanishi
A network-based trans-omics approach for predicting synergistic drug combinations. Communications medicine 4 (1) (2024)
Nanako Inoue, Tomokazu Shibata, Yusuke Tanaka, Hiromu Taguchi, Ryusuke Sawada, Kenshin Goto, Shogo Momokita, Morihiro Aoyagi, Takashi Hirao, Yoshihiro Yamanishi
Revealing Comprehensive Food Functionalities and Mechanisms of Action through Machine Learning. Journal of chemical information and modeling (2024)
Yuki Matsukiyo, Atsushi Tengeiji, Chen Li, Yoshihiro Yamanishi
Transcriptionally Conditional Recurrent Neural Network for De Novo Drug Design. Journal of chemical information and modeling 64 (15) (2024)
Midori Iida, Yurika Kuniki, Kenta Yagi, Mitsuhiro Goda, Satoko Namba, Jun-Ichi Takeshita, Ryusuke Sawada, Michio Iwata, Yoshito Zamami, Keisuke Ishizawa, Yoshihiro Yamanishi
A network-based trans-omics approach for predicting synergistic drug combinations. Communications medicine 4 (1) (2024)
Midori Iida, Yurika Kuniki, Kenta Yagi, Mitsuhiro Goda, Satoko Namba, Jun-Ichi Takeshita, Ryusuke Sawada, Michio Iwata, Yoshito Zamami, Keisuke Ishizawa, Yoshihiro Yamanishi
A network-based trans-omics approach for predicting synergistic drug combinations. Communications medicine 4 (1) (2024)
Zhaonan Zou, Yuka Yoshimura, Yoshihiro Yamanishi, Shinya Oki
Elucidating disease-associated mechanisms triggered by pollutants via the epigenetic landscape using large-scale ChIP-Seq data. Epigenetics & chromatin 16 (1) (2023)
Shintaro Yamada, Toshiyuki Ko, Masamichi Ito, Tatsuro Sassa, Seitaro Nomura, Hiromichi Okuma, Mayuko Sato, Tsuyoshi Imasaki, Satoshi Kikkawa, Bo Zhang, Takanobu Yamada, Yuka Seki, Kanna Fujita, Manami Katoh, Masayuki Kubota, Satoshi Hatsuse, Mikako Katagiri, Hiromu Hayashi, Momoko Hamano, Norifumi Takeda, Hiroyuki Morita, Shuji Takada, Masashi Toyoda, Masanobu Uchiyama, Masashi Ikeuchi, Kiminori Toyooka, Akihiro Umezawa, Yoshihiro Yamanishi, Ryo Nitta, Hiroyuki Aburatani, Issei Komuro
TEAD1 trapping by the Q353R-Lamin A/C causes dilated cardiomyopathy. Science advances 9 (15) (2023)
Kazuma Kaitoh, Yoshihiro Yamanishi
Scaffold-Retained Structure Generator to Exhaustively Create Molecules in an Arbitrary Chemical Space. Journal of chemical information and modeling 62 (9) (2022)
Michio Iwata, Hiroaki Mutsumine, Yusuke Nakayama, Naomasa Suita, Yoshihiro Yamanishi
Pathway trajectory analysis with tensor imputation reveals drug-induced single-cell transcriptomic landscape. Nature computational science 2 (11) (2022)
Michio Iwata, Hiroaki Mutsumine, Yusuke Nakayama, Naomasa Suita, Yoshihiro Yamanishi
Pathway trajectory analysis with tensor imputation reveals drug-induced single-cell transcriptomic landscape. Nature computational science 2 (11) (2022)
Michio Iwata, Hiroaki Mutsumine, Yusuke Nakayama, Naomasa Suita, Yoshihiro Yamanishi
Pathway trajectory analysis with tensor imputation reveals drug-induced single-cell transcriptomic landscape. Nature computational science 2 (11) (2022)
Michio Iwata, Keisuke Kosai, Yuya Ono, Shinya Oki, Koshi Mimori, Yoshihiro Yamanishi
Regulome-based characterization of drug activity across the human diseasome. NPJ systems biology and applications 8 (1) (2022)
Zhaonan Zou, Michio Iwata, Yoshihiro Yamanishi, Shinya Oki
Epigenetic landscape of drug responses revealed through large-scale ChIP-seq data analyses. BMC bioinformatics 23 (1) (2022)
Michio Iwata, Hiroaki Mutsumine, Yusuke Nakayama, Naomasa Suita, Yoshihiro Yamanishi
Pathway trajectory analysis with tensor imputation reveals drug-induced single-cell transcriptomic landscape. Nature computational science 2 (11) (2022)
Ryohei Eguchi, Momoko Hamano, Michio Iwata, Toru Nakamura, Shinya Oki, Yoshihiro Yamanishi
TRANSDIRE: data-driven direct reprogramming by a pioneer factor-guided trans-omics approach. Bioinformatics (Oxford, England) 38 (10) (2022)