Zhandong Liu

Scopus Author ID Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 39

Top Topics

Machine Learning

Magnetic Resonance

Top Venues

bioRxiv : the preprint server for biology

BMC bioinformatics

NAR genomics and bioinformatics

This page only lists publications with an associated author ORCID identifier.

Publications

Dongxue Mao, Chaozhong Liu, Linhua Wang, Rami Ai-Ouran, Cole Deisseroth, Sasidhar Pasupuleti, Seon Young Kim, Lucian Li, Jill Anne Rosenfeld, Linyan Meng, Lindsay C Burrage, Michael F Wangler, Shinya Yamamoto, null null, Michael Santana, Victor Perez, Priyank Shukla, Christine M Eng, Brendan H Lee, Bo Yuan, Fan Xia, Hugo J Bellen, Pengfei Liu, Zhandong Liu
AI-MARRVEL - A Knowledge-Driven AI System for Diagnosing Mendelian Disorders. NEJM AI 1 (5) (2024)
Chaozhong Liu, Linhua Wang, Zhandong Liu
Quantification and visualization of cis -regulatory dynamics in single-cell multi-omics data with TREASMO. NAR genomics and bioinformatics 6 (1) (2024)
Dongxue Mao, Chaozhong Liu, Linhua Wang, Rami Ai-Ouran, Cole Deisseroth, Sasidhar Pasupuleti, Seon Young Kim, Lucian Li, Jill Anne Rosenfeld, Linyan Meng, Lindsay C Burrage, Michael F Wangler, Shinya Yamamoto, null null, Michael Santana, Victor Perez, Priyank Shukla, Christine M Eng, Brendan H Lee, Bo Yuan, Fan Xia, Hugo J Bellen, Pengfei Liu, Zhandong Liu
AI-MARRVEL - A Knowledge-Driven AI System for Diagnosing Mendelian Disorders. NEJM AI 1 (5) (2024)
Xin Li, Chaozhong Liu, Wenbo Li, Yanwan Dai, Chaohao Gu, Wenjun Zhou, Veronica C Ciliberto, Jing Liang, Udhaya Kumar S, Dongyin Guan, Zhaoyong Hu, Hui Zheng, Hu Chen, Zhandong Liu, Ying-Wooi Wan, Zheng Sun
Multi-omics delineate growth factor network underlying exercise effects in an Alzheimer's mouse model. bioRxiv : the preprint server for biology (2024)
Xin Li, Chaozhong Liu, Wenbo Li, Yanwan Dai, Chaohao Gu, Wenjun Zhou, Veronica C Ciliberto, Jing Liang, Kumar S Udhaya, Dongyin Guan, Zhaoyong Hu, Hui Zheng, Hu Chen, Zhandong Liu, Ying-Wooi Wan, Zheng Sun
Multi-omics delineate growth factor network underlying exercise effects in an Alzheimer's mouse model. bioRxiv : the preprint server for biology (2024)
Chaozhong Liu, Linhua Wang, Zhandong Liu
Quantification and visualization of cis -regulatory dynamics in single-cell multi-omics data with TREASMO. NAR genomics and bioinformatics 6 (1) (2024)
Chaozhong Liu, Linhua Wang, Zhandong Liu
Quantification and visualization of cis -regulatory dynamics in single-cell multi-omics data with TREASMO. NAR genomics and bioinformatics 6 (1) (2024)
Dongxue Mao, Chaozhong Liu, Linhua Wang, Rami Ai-Ouran, Cole Deisseroth, Sasidhar Pasupuleti, Seon Young Kim, Lucian Li, Jill Anne Rosenfeld, Linyan Meng, Lindsay C Burrage, Michael F Wangler, Shinya Yamamoto, null null, Michael Santana, Victor Perez, Priyank Shukla, Christine M Eng, Brendan H Lee, Bo Yuan, Fan Xia, Hugo J Bellen, Pengfei Liu, Zhandong Liu
AI-MARRVEL - A Knowledge-Driven AI System for Diagnosing Mendelian Disorders. NEJM AI 1 (5) (2024)
Linhua Wang, Chaozhong Liu, Zhandong Liu
Unraveling Spatial Gene Associations with SEAGAL: a Python Package for Spatial Transcriptomics Data Analysis and Visualization. bioRxiv : the preprint server for biology (2023)
Chaozhong Liu, Linhua Wang, Zhandong Liu
scGREAT: Graph-based regulatory element analysis tool for single-cell multi-omics data. bioRxiv : the preprint server for biology (2023)
Wanli Wang, Li-Hua Ma, Mirjana Maletic-Savatic, Zhandong Liu
NMRQNet: a deep learning approach for automatic identification and quantification of metabolites using Nuclear Magnetic Resonance (NMR) in human plasma samples. bioRxiv : the preprint server for biology (2023)
Wanli Wang, Li-Hua Ma, Mirjana Maletic-Savatic, Zhandong Liu
NMRQNet: a deep learning approach for automatic identification and quantification of metabolites using Nuclear Magnetic Resonance (NMR) in human plasma samples. bioRxiv : the preprint server for biology (2023)
Chaozhong Liu, Linhua Wang, Zhandong Liu
scGREAT: Graph-based regulatory element analysis tool for single-cell multi-omics data. bioRxiv : the preprint server for biology (2023)
Xu Han, Wanli Wang, Li-Hua Ma, Ismael Al-Ramahi, Juan Botas, Kevin MacKenzie, Genevera I Allen, Damian W Young, Zhandong Liu, Mirjana Maletic-Savatic
SPA-STOCSY: An Automated Tool for Identification of Annotated and Non-Annotated Metabolites in High-Throughput NMR Spectra. bioRxiv : the preprint server for biology (2023)
Venkata Soumith Jonnakuti, Eric J Wagner, Mirjana Maletic-Savatic, Zhandong Liu, Hari Krishna Yalamanchili
PolyAMiner-Bulk: A Machine Learning Based Bioinformatics Algorithm to Infer and Decode Alternative Polyadenylation Dynamics from bulk RNA-seq data. bioRxiv : the preprint server for biology (2023)
Chaozhong Liu, Linhua Wang, Zhandong Liu
Single-cell multi-omics integration for unpaired data by a siamese network with graph-based contrastive loss. BMC bioinformatics 24 (1) (2023)
Venkata Soumith Jonnakuti, Eric J Wagner, Mirjana Maletic-Savatic, Zhandong Liu, Hari Krishna Yalamanchili
PolyAMiner-Bulk: A Machine Learning Based Bioinformatics Algorithm to Infer and Decode Alternative Polyadenylation Dynamics from bulk RNA-seq data. bioRxiv : the preprint server for biology (2023)
Chaozhong Liu, Linhua Wang, Zhandong Liu
Single-cell multi-omics integration for unpaired data by a siamese network with graph-based contrastive loss. BMC bioinformatics 24 (1) (2023)
Linhua Wang, Chaozhong Liu, Zhandong Liu
Unraveling Spatial Gene Associations with SEAGAL: a Python Package for Spatial Transcriptomics Data Analysis and Visualization. bioRxiv : the preprint server for biology (2023)
Chaozhong Liu, Linhua Wang, Zhandong Liu
Correction: Single-cell multi-omics integration for unpaired data by a siamese network with graph-based contrastive loss. BMC bioinformatics 24 (1) (2023)
Chaozhong Liu, Linhua Wang, Zhandong Liu
Single-cell multi-omics integration for unpaired data by a siamese network with graph-based contrastive loss. BMC bioinformatics 24 (1) (2023)
Xu Han, Wanli Wang, Li-Hua Ma, Ismael Al-Ramahi, Juan Botas, Kevin MacKenzie, Genevera I Allen, Damian W Young, Zhandong Liu, Mirjana Maletic-Savatic
SPA-STOCSY: An Automated Tool for Identification of Annotated and Non-Annotated Metabolites in High-Throughput NMR Spectra. bioRxiv : the preprint server for biology (2023)
Chaozhong Liu, Linhua Wang, Zhandong Liu
Single-cell multi-omics integration for unpaired data by a siamese network with graph-based contrastive loss. BMC bioinformatics 24 (1) (2023)
Wanli Wang, Li-Hua Ma, Mirjana Maletic-Savatic, Zhandong Liu
NMRQNet: a deep learning approach for automatic identification and quantification of metabolites using Nuclear Magnetic Resonance (NMR) in human plasma samples. bioRxiv : the preprint server for biology (2023)
Chaozhong Liu, Linhua Wang, Zhandong Liu
Correction: Single-cell multi-omics integration for unpaired data by a siamese network with graph-based contrastive loss. BMC bioinformatics 24 (1) (2023)
Chaozhong Liu, Linhua Wang, Zhandong Liu
scGREAT: Graph-based regulatory element analysis tool for single-cell multi-omics data. bioRxiv : the preprint server for biology (2023)
Linhua Wang, Mirjana Maletic-Savatic, Zhandong Liu
Region-specific denoising identifies spatial co-expression patterns and intra-tissue heterogeneity in spatially resolved transcriptomics data. Nature communications 13 (1) (2022)
J Michael Harnish, Lucian Li, Sanja Rogic, Guillaume Poirier-Morency, Seon-Young Kim, null null, Kym M Boycott, Michael F Wangler, Hugo J Bellen, Philip Hieter, Paul Pavlidis, Zhandong Liu, Shinya Yamamoto
ModelMatcher: A scientist-centric online platform to facilitate collaborations between stakeholders of rare and undiagnosed disease research. Human mutation 43 (6) (2022)
Emily J Hill, Laurie A Robak, Rami Al-Ouran, Jennifer Deger, Jamie C Fong, Paul Jerrod Vandeventer, Emily Schulman, Sindhu Rao, Hiba Saade, Joseph M Savitt, Rainer von Coelln, Neeja Desai, Harsha Vardhan Doddapaneni, Sejal Salvi, Shannon Dugan-Perez, Donna M Muzny, Amy L McGuire, Zhandong Liu, Richard A Gibbs, Chad A Shaw, Joseph Jankovic, Lisa M Shulman, Joshua M Shulman
Genome Sequencing in the Parkinson Disease Clinic. Neurology. Genetics 8 (4) (2022)
Haijing Jin, Zhandong Liu
A benchmark for RNA-seq deconvolution analysis under dynamic testing environments. Genome biology 22 (1) (2021)
Yingyao Shao, Yehezkel Sztainberg, Qi Wang, Sameer S Bajikar, Alexander J Trostle, Ying-Wooi Wan, Paymaan Jafar-Nejad, Frank Rigo, Zhandong Liu, Jianrong Tang, Huda Yaya Zoghbi
Antisense oligonucleotide therapy in a humanized mouse model of MECP2 duplication syndrome. Science translational medicine 13 (583) (2021)
Kaifang Pang, Li Wang, Wei Wang, Jian Zhou, Chao Cheng, Kihoon Han, Huda Y Zoghbi, Zhandong Liu
Coexpression enrichment analysis at the single-cell level reveals convergent defects in neural progenitor cells and their cell-type transitions in neurodevelopmental disorders. Genome research 30 (6) (2020)
Russell Li, Zhandong Liu
Stress detection using deep neural networks. BMC medical informatics and decision making 20 (Suppl 11) (2020)
Akash J Patel, Ying-Wooi Wan, Rami Al-Ouran, Jean-Pierre Revelli, Maria F Cardenas, Mazen Oneissi, Liu Xi, Ali Jalali, John F Magnotti, Donna M Muzny, HarshaVardhan Doddapaneni, Sherly Sebastian, Kent A Heck, J Clay Goodman, Shankar P Gopinath, Zhandong Liu, Ganesh Rao, Sharon E Plon, Daniel Yoshor, David A Wheeler, Huda Y Zoghbi, Tiemo J Klisch
Molecular profiling predicts meningioma recurrence and reveals loss of DREAM complex repression in aggressive tumors. Proceedings of the National Academy of Sciences of the United States of America 116 (43) (2019)
Hyun-Hwan Jeong, Seon Young Kim, Maxime W C Rousseaux, Huda Y Zoghbi, Zhandong Liu
Beta-binomial modeling of CRISPR pooled screen data identifies target genes with greater sensitivity and fewer false negatives. Genome research 29 (6) (2019)
Li Wang, Carolyn J Adamski, Vitaliy V Bondar, Evelyn Craigen, John R Collette, Kaifang Pang, Kihoon Han, Antrix Jain, Sung Y Jung, Zhandong Liu, Richard N Sifers, J Lloyd Holder, Huda Yaya Zoghbi
A kinome-wide RNAi screen identifies ERK2 as a druggable regulator of Shank3 stability. Molecular psychiatry 25 (10) (2019)
Li Wang, Kaifang Pang, Kihoon Han, Carolyn J Adamski, Wei Wang, Lingjie He, Jason K Lai, Vitaliy V Bondar, Joseph G Duman, Ronald Richman, Kimberley F Tolias, Patrick Barth, Timothy Palzkill, Zhandong Liu, J Lloyd Holder, Huda Yaya Zoghbi
An autism-linked missense mutation in SHANK3 reveals the modularity of Shank3 function. Molecular psychiatry 25 (10) (2019)
Ayush T Raman, Amy E Pohodich, Ying-Wooi Wan, Hari Krishna Yalamanchili, William E Lowry, Huda Yaya Zoghbi, Zhandong Liu
Apparent bias toward long gene misregulation in MeCP2 syndromes disappears after controlling for baseline variations. Nature communications 9 (1) (2018)
Qiumin Tan, Lorenzo Brunetti, Maxime W C Rousseaux, Hsiang-Chih Lu, Ying-Wooi Wan, Jean-Pierre Revelli, Zhandong Liu, Margaret A Goodell, Huda Y Zoghbi
Loss of Capicua alters early T cell development and predisposes mice to T cell lymphoblastic leukemia/lymphoma. Proceedings of the National Academy of Sciences of the United States of America 115 (7) (2018)