Zhongyue J Yang (Zhongyue Yang)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 48

Top Venues

ACS chemical biology

Journal of chemical information and modeling

The journal of physical chemistry. B

Accounts of chemical research

Vanderbilt University

University of California Los Angeles (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Vanderbilt University Aug 01 2020

United States

Assistant Professor :: Department of Chemistry | Data science institute

Massachusetts Institute of Technology Jan 06 2018 - Jul 31 2020

United States

Postdoctoral Associate :: Chemical Engineering

Education History

University of California Los Angeles

United States

PHD :: Chemistry and Biochemistry

Nankai University

China

BSC :: Chemistry

Publications

Drew V Carson, Reecan J Juarez, Truc Do, Zhongyue J Yang, A James Link
Antimicrobial Lasso Peptide Cloacaenodin Utilizes a Unique TonB-Dependent Transporter to Access Susceptible Bacteria. ACS chemical biology 19 (4) (2024)
Alexandra C Koziel, Marco Bortoli, Matthew Tremblay, Yilun Zhao, Laura Orian, Zhongyue J Yang, Nathan D Schley, Janet E Macdonald
Five Hypotheses on the Origins of Temperature Dependence of 77 Se NMR Shifts in Diselenides. Inorganic chemistry 63 (26) (2024)
Drew V Carson, Reecan J Juarez, Truc Do, Zhongyue J Yang, A James Link
Antimicrobial Lasso Peptide Cloacaenodin Utilizes a Unique TonB-Dependent Transporter to Access Susceptible Bacteria. ACS chemical biology 19 (4) (2024)
Drew V Carson, Reecan J Juarez, Truc Do, Zhongyue J Yang, A James Link
Antimicrobial Lasso Peptide Cloacaenodin Utilizes a Unique TonB-Dependent Transporter to Access Susceptible Bacteria. ACS chemical biology 19 (4) (2024)
Drew V Carson, Reecan J Juarez, Truc Do, Zhongyue J Yang, A James Link
Antimicrobial Lasso Peptide Cloacaenodin Utilizes a Unique TonB-Dependent Transporter to Access Susceptible Bacteria. ACS chemical biology 19 (4) (2024)
Alexandra C Koziel, Marco Bortoli, Matthew Tremblay, Yilun Zhao, Laura Orian, Zhongyue J Yang, Nathan D Schley, Janet E Macdonald
Five Hypotheses on the Origins of Temperature Dependence of 77 Se NMR Shifts in Diselenides. Inorganic chemistry 63 (26) (2024)
Alexandra C Koziel, Marco Bortoli, Matthew Tremblay, Yilun Zhao, Laura Orian, Zhongyue J Yang, Nathan D Schley, Janet E Macdonald
Five Hypotheses on the Origins of Temperature Dependence of 77 Se NMR Shifts in Diselenides. Inorganic chemistry 63 (26) (2024)
Alexandra C Koziel, Marco Bortoli, Matthew Tremblay, Yilun Zhao, Laura Orian, Zhongyue J Yang, Nathan D Schley, Janet E Macdonald
Five Hypotheses on the Origins of Temperature Dependence of 77 Se NMR Shifts in Diselenides. Inorganic chemistry (2024)
Drew V Carson, Reecan J Juarez, Truc Do, Zhongyue J Yang, A James Link
Antimicrobial Lasso Peptide Cloacaenodin Utilizes a Unique TonB-Dependent Transporter to Access Susceptible Bacteria. ACS chemical biology (2024)
Drew V Carson, Reecan J Juarez, Truc Do, Zhongyue J Yang, A James Link
Antimicrobial Lasso Peptide Cloacaenodin Utilizes a Unique TonB-Dependent Transporter to Access Susceptible Bacteria. ACS chemical biology 19 (4) (2024)
Drew V Carson, Reecan J Juarez, Truc Do, Zhongyue J Yang, A James Link
Antimicrobial Lasso Peptide Cloacaenodin Utilizes a Unique TonB-Dependent Transporter to Access Susceptible Bacteria. ACS chemical biology 19 (4) (2024)
Drew V Carson, Reecan J Juarez, Truc Do, Zhongyue J Yang, A James Link
Antimicrobial Lasso Peptide Cloacaenodin Utilizes a Unique TonB-Dependent Transporter to Access Susceptible Bacteria. ACS chemical biology 19 (4) (2024)
Wook Shin, Zhongyue J Yang
Computational Strategies for Entropy Modeling in Chemical Processes. Chemistry, an Asian journal (2023)
Reecan J Juarez, Yaoyukun Jiang, Matthew Tremblay, Qianzhen Shao, A James Link, Zhongyue J Yang
LassoHTP: A High-Throughput Computational Tool for Lasso Peptide Structure Construction and Modeling. Journal of chemical information and modeling 63 (2) (2023)
Carole A Bewley, Gary A Sulikowski, Zhongyue J Yang, Giuseppe Bifulco, Hyo-Moon Cho, Christopher R Fullenkamp
Properties of Configurationally Stable Atropoenantiomers in Macrocyclic Natural Products and the Chrysophaentin Family. Accounts of chemical research 56 (4) (2023)
Carole A Bewley, Gary A Sulikowski, Zhongyue J Yang, Giuseppe Bifulco, Hyo-Moon Cho, Christopher R Fullenkamp
Properties of Configurationally Stable Atropoenantiomers in Macrocyclic Natural Products and the Chrysophaentin Family. Accounts of chemical research 56 (4) (2023)
Reecan J Juarez, Yaoyukun Jiang, Matthew Tremblay, Qianzhen Shao, A James Link, Zhongyue J Yang
LassoHTP: A High-Throughput Computational Tool for Lasso Peptide Structure Construction and Modeling. Journal of chemical information and modeling 63 (2) (2023)
Christopher Jurich, Zhongyue J Yang
High-Throughput Computational Investigation of Protein Electrostatics and Cavity for SAM-Dependent Methyltransferases. Protein science : a publication of the Protein Society (2023)
Xinchun Ran, Yaoyukun Jiang, Qianzhen Shao, Zhongyue J Yang
EnzyKR: a chirality-aware deep learning model for predicting the outcomes of the hydrolase-catalyzed kinetic resolution. Chemical science 14 (43) (2023)
Yaoyukun Jiang, Ning Ding, Qianzhen Shao, Sebastian L Stull, Zihao Cheng, Zhongyue J Yang
Substrate Positioning Dynamics Involves a Non-Electrostatic Component to Mediate Catalysis. The journal of physical chemistry letters (2023)
Wook Shin, Xinchun Ran, Zhongyue J Yang
Accelerated Entropic Path Sampling with a Bidirectional Generative Adversarial Network. The journal of physical chemistry. B 127 (19) (2023)
Qianzhen Shao, Yaoyukun Jiang, Zhongyue J Yang
EnzyHTP Computational Directed Evolution with Adaptive Resource Allocation. Journal of chemical information and modeling (2023)
Wook Shin, Xinchun Ran, Zhongyue J Yang
Accelerated Entropic Path Sampling with a Bidirectional Generative Adversarial Network. The journal of physical chemistry. B (2023)
Alina Thokkadam, Truc Do, Xinchun Ran, Mark P Brynildsen, Zhongyue J Yang, A James Link
High-Throughput Screen Reveals the Structure-Activity Relationship of the Antimicrobial Lasso Peptide Ubonodin. ACS central science 9 (3) (2023)
Zhongyue J Yang, Qianzhen Shao, Yaoyukun Jiang, Christopher Jurich, Xinchun Ran, Reecan J Juarez, Bailu Yan, Sebastian L Stull, Anvita Gollu, Ning Ding
Mutexa: A Computational Ecosystem for Intelligent Protein Engineering. Journal of chemical theory and computation (2023)
Carole A Bewley, Gary A Sulikowski, Zhongyue J Yang, Giuseppe Bifulco, Hyo-Moon Cho, Christopher R Fullenkamp
Properties of Configurationally Stable Atropoenantiomers in Macrocyclic Natural Products and the Chrysophaentin Family. Accounts of chemical research (2023)
Reecan J Juarez, Yaoyukun Jiang, Matthew Tremblay, Qianzhen Shao, A James Link, Zhongyue J Yang
LassoHTP: A High-Throughput Computational Tool for Lasso Peptide Structure Construction and Modeling. Journal of chemical information and modeling 63 (2) (2023)
Reecan J Juarez, Yaoyukun Jiang, Matthew Tremblay, Qianzhen Shao, A James Link, Zhongyue J Yang
LassoHTP: A High-Throughput Computational Tool for Lasso Peptide Structure Construction and Modeling. Journal of chemical information and modeling (2023)
Alina Thokkadam, Truc Do, Xinchun Ran, Mark P Brynildsen, Zhongyue J Yang, A James Link
High-Throughput Screen Reveals the Structure-Activity Relationship of the Antimicrobial Lasso Peptide Ubonodin. ACS central science 9 (3) (2023)
Carole A Bewley, Gary A Sulikowski, Zhongyue J Yang, Giuseppe Bifulco, Hyo-Moon Cho, Christopher R Fullenkamp
Properties of Configurationally Stable Atropoenantiomers in Macrocyclic Natural Products and the Chrysophaentin Family. Accounts of chemical research 56 (4) (2023)
Qianzhen Shao, Yaoyukun Jiang, Zhongyue J Yang
EnzyHTP: A High-Throughput Computational Platform for Enzyme Modeling. Journal of chemical information and modeling 62 (3) (2022)
Douglas A Rose, Joseph W Treacy, Zhongyue J Yang, Jeong Hoon Ko, Kendall N Houk, Heather D Maynard
Self-Immolative Hydroxybenzylamine Linkers for Traceless Protein Modification. Journal of the American Chemical Society 144 (13) (2022)
Yaoyukun Jiang, Sebastian L Stull, Qianzhen Shao, Zhongyue J Yang
Convergence in determining enzyme functional descriptors across Kemp eliminase variants. Electronic structure (Bristol, England) 4 (4) (2022)
Bailu Yan, Xinchun Ran, Anvita Gollu, Zihao Cheng, Xiang Zhou, Yiwen Chen, Zhongyue J Yang
IntEnzyDB: an Integrated Structure-Kinetics Enzymology Database. Journal of chemical information and modeling 62 (22) (2022)
Zhongyue J Yang, Natalia Hajlasz, Heather J Kulik
Computational Modeling of Conformer Stability in Benenodin-1, a Thermally Actuated Lasso Peptide Switch. The journal of physical chemistry. B 126 (18) (2022)
Yaoyukun Jiang, Xinchun Ran, Zhongyue J Yang
Data-Driven Enzyme Engineering to Identify Function-Enhancing Enzymes. Protein engineering, design & selection : PEDS (2022)
Yaoyukun Jiang, Bailu Yan, Yu Chen, Reecan J Juarez, Zhongyue J Yang
Molecular Dynamics-Derived Descriptor Informs the Impact of Mutation on the Catalytic Turnover Number in Lactonase Across Substrates. The journal of physical chemistry. B 126 (13) (2022)
Beverly Fu, Azadeh Nazemi, Benjamin J Levin, Zhongyue J Yang, Heather J Kulik, Emily P Balskus
Mechanistic Studies of a Skatole-Forming Glycyl Radical Enzyme Suggest Reaction Initiation via Hydrogen Atom Transfer. Journal of the American Chemical Society 144 (25) (2022)
Zhongyue J Yang, Heather J Kulik
Protein Dynamics and Substrate Protonation States Mediate the Catalytic Action of trans-4-Hydroxy-l-Proline Dehydratase. The journal of physical chemistry. B 125 (28) (2021)
Kendall N Houk, Fang Liu, Zhongyue J Yang, Jeffrey I Seeman
Evolution of the Diels-Alder Reaction Mechanism since the 1930s: Woodward, Houk with Woodward, and the Influence of Computational Chemistry on Understanding Cycloadditions. Angewandte Chemie (International ed. in English) 60 (23) (2021)
Zhi-Xin Qin, Matthew Tremblay, Xin Hong, Zhongyue J Yang
Entropic Path Sampling: Computational Protocol to Evaluate Entropic Profile along a Reaction Path. The journal of physical chemistry letters 12 (43) (2021)
Bailu Yan, Xinchun Ran, Yaoyukun Jiang, Sarah K Torrence, Li Yuan, Qianzhen Shao, Zhongyue J Yang
Rate-Perturbing Single Amino Acid Mutation for Hydrolases: A Statistical Profiling. The journal of physical chemistry. B 125 (38) (2021)
Cody L Ritt, Jay R Werber, Mengyi Wang, Zhongyue J Yang, Yumeng Zhao, Heather J Kulik, Menachem Elimelech
Ionization behavior of nanoporous polyamide membranes. Proceedings of the National Academy of Sciences of the United States of America 117 (48) (2020)
Lei Bao, Wen Liu, Yanwei Li, Xueyu Wang, Fei Xu, Zhongyue J Yang, Yue Yue, Chenpeng Zuo, Qingzhu Zhang, Wenxing Wang
Carcinogenic Metabolic Activation Process of Naphthalene by the Cytochrome P450 Enzyme 1B1: A Computational Study. Chemical research in toxicology 32 (4) (2019)
Zhongyue J Yang, Fang Liu, Adam H Steeves, Heather J Kulik
Quantum Mechanical Description of Electrostatics Provides a Unified Picture of Catalytic Action Across Methyltransferases. The journal of physical chemistry letters 10 (13) (2019)
Xiao-Song Xue, Cooper S Jamieson, Marc Garcia-Borràs, Xiaofei Dong, Zhongyue J Yang, Kendall N Houk
Ambimodal Trispericyclic Transition State and Dynamic Control of Periselectivity. Journal of the American Chemical Society 141 (3) (2019)
Zhongyue J Yang, Kendall N Houk
The Dynamics of Chemical Reactions: Atomistic Visualizations of Organic Reactions, and Homage to van 't Hoff. Chemistry (Weinheim an der Bergstrasse, Germany) 24 (16) (2018)
Zhongyue J Yang, Xiaofei Dong, Yanmin Yu, Peiyuan Yu, Yingzi Li, Cooper Jamieson, Kendall N Houk
Relationships between Product Ratios in Ambimodal Pericyclic Reactions and Bond Lengths in Transition Structures. Journal of the American Chemical Society 140 (8) (2018)

Zhongyue J Yang.css-eqlu8i{font-size:small;padding-left:4px;} (Zhongyue Yang)

Publication Activity (10 Years)

Top Topics

Top Venues

Zhongyue J Yang (Zhongyue Yang)